Gene annotation
Transcriptome id Sobic.002G220200.2
Synonym Sb02g026140, THFS
Functional annotation formate--tetrahydrofolate ligase, putative, expressed
UniProt A0A1W0W5I9
Pfam PF01268
Panther DB PTHR10025
NCBI CDD -
KEGG Orthology K01938; formate--tetrahydrofolate ligase
Gene Ontology GO:0009396; folic acid-containing compound biosynthetic process GO:0005524ATP binding GO:0004329formate-tetrahydrofolate ligase activity


Orthologs (automatic annotation)
TAIR AT1G50480 : 10-formyltetrahydrofolate synthetase
RAP-DB (Rice) LOC_Os09g27420.1 : formate--tetrahydrofolate ligase, putative, expressed
MaizeGDB (Corn) Zm00025a047207
Brachypodium KQJ90457
Barley HORVU5Hr1G058370.1 , HORVU5Hr1G066960.2
Wheat TraesCS5D02G235400 , TraesCS5D02G235400 , TraesCS5B02G231100 , TraesCS5B02G231100 , TraesCS5A02G232800
Populus -


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cDNA sequences
Sobic.002G220200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G343200 homeodomain-like, putative, expressed -
2 Sobic.003G393200 expressed protein -
3 Sobic.007G153500 metal cation transporter, putative, expressed K14713: SLC39A7, KE4, solute carrier family 39 (zinc transporter), member 7
4 Sobic.009G112300 kinase, pfkB family, putative, expressed -
5 Sobic.006G282200 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed K12666: OST1, oligosaccharyltransferase complex subunit alpha (ribophorin I)
6 Sobic.010G152600 - -
7 Sobic.009G059400 expressed protein -
8 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
9 Sobic.005G198200 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
10 Sobic.001G051400 aminoacyl-tRNA synthetase, putative, expressed -
11 Sobic.002G093300 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
12 Sobic.001G025700 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
13 Sobic.010G250000 60S ribosomal protein L8, putative, expressed -
14 Sobic.003G150900 protein transport protein-related, putative, expressed -
15 Sobic.003G113300 expressed protein -
16 Sobic.008G019532 - -
17 Sobic.007G218600 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
18 Sobic.005G150600 expressed protein -
19 Sobic.003G297700 lipid-A-disaccharide synthase family protein, expressed K00748: lipid-A-disaccharide synthase
20 Sobic.004G106400 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic002G220200 Sobic002G220200 Sobic002G343200 Sobic002G343200 Sobic002G220200--Sobic002G343200 Sobic003G393200 Sobic003G393200 Sobic002G220200--Sobic003G393200 Sobic007G153500 Sobic007G153500 Sobic002G220200--Sobic007G153500 Sobic009G112300 Sobic009G112300 Sobic002G220200--Sobic009G112300 Sobic006G282200 Sobic006G282200 Sobic002G220200--Sobic006G282200 Sobic010G152600 Sobic010G152600 Sobic002G220200--Sobic010G152600 Sobic009G059400 Sobic009G059400 Sobic002G220200--Sobic009G059400 Sobic010G192600 Sobic010G192600 Sobic002G220200--Sobic010G192600 Sobic005G198200 Sobic005G198200 Sobic002G220200--Sobic005G198200 Sobic003G297700 Sobic003G297700 Sobic002G343200--Sobic003G297700 Sobic007G016900 Sobic007G016900 Sobic002G343200--Sobic007G016900 Sobic002G343200--Sobic006G282200 Sobic002G386900 Sobic002G386900 Sobic002G343200--Sobic002G386900 Sobic003G304400 Sobic003G304400 Sobic002G343200--Sobic003G304400 Sobic003G052800 Sobic003G052800 Sobic002G343200--Sobic003G052800 Sobic001G051400 Sobic001G051400 Sobic002G343200--Sobic001G051400 Sobic005G133800 Sobic005G133800 Sobic002G343200--Sobic005G133800 Sobic002G343200--Sobic002G220200 Sobic003G190200 Sobic003G190200 Sobic003G393200--Sobic003G190200 Sobic005G123400 Sobic005G123400 Sobic003G393200--Sobic005G123400 Sobic003G393200--Sobic001G051400 Sobic006G237500 Sobic006G237500 Sobic003G393200--Sobic006G237500 Sobic002G066800 Sobic002G066800 Sobic003G393200--Sobic002G066800 Sobic005G087300 Sobic005G087300 Sobic003G393200--Sobic005G087300 Sobic001G043200 Sobic001G043200 Sobic003G393200--Sobic001G043200 Sobic001G343000 Sobic001G343000 Sobic003G393200--Sobic001G343000 Sobic003G393200--Sobic009G059400 Sobic002G076500 Sobic002G076500 Sobic007G153500--Sobic002G076500 Sobic002G322400 Sobic002G322400 Sobic007G153500--Sobic002G322400 Sobic001G114200 Sobic001G114200 Sobic007G153500--Sobic001G114200 Sobic002G392400 Sobic002G392400 Sobic007G153500--Sobic002G392400 Sobic007G153500--Sobic005G087300 Sobic007G153500--Sobic003G393200 Sobic001G025700 Sobic001G025700 Sobic007G153500--Sobic001G025700 Sobic001G455000 Sobic001G455000 Sobic007G153500--Sobic001G455000 Sobic009G186700 Sobic009G186700 Sobic007G153500--Sobic009G186700 Sobic009G112300--Sobic002G220200 Sobic002G199400 Sobic002G199400 Sobic009G112300--Sobic002G199400 Sobic005G150600 Sobic005G150600 Sobic009G112300--Sobic005G150600 Sobic004G030400 Sobic004G030400 Sobic009G112300--Sobic004G030400 Sobic009G113100 Sobic009G113100 Sobic009G112300--Sobic009G113100 Sobic009G112300--Sobic002G343200 Sobic006G141600 Sobic006G141600 Sobic009G112300--Sobic006G141600 Sobic009G112300--Sobic006G282200 Sobic009G112300--Sobic002G076500 Sobic006G265600 Sobic006G265600 Sobic006G282200--Sobic006G265600 Sobic003G397900 Sobic003G397900 Sobic006G282200--Sobic003G397900 Sobic006G282200--Sobic010G192600 Sobic001G474400 Sobic001G474400 Sobic006G282200--Sobic001G474400 Sobic006G282200--Sobic003G304400 Sobic006G282200--Sobic002G343200 Sobic006G282200--Sobic002G199400 Sobic003G150900 Sobic003G150900 Sobic006G282200--Sobic003G150900 Sobic004G151200 Sobic004G151200 Sobic006G282200--Sobic004G151200 Sobic010G152600--Sobic002G220200 Sobic003G304800 Sobic003G304800 Sobic010G152600--Sobic003G304800 Sobic003G246000 Sobic003G246000 Sobic010G152600--Sobic003G246000 Sobic007G031100 Sobic007G031100 Sobic010G152600--Sobic007G031100 Sobic010G152600--Sobic006G282200 Sobic010G278600 Sobic010G278600 Sobic010G152600--Sobic010G278600 Sobic009G122900 Sobic009G122900 Sobic010G152600--Sobic009G122900 Sobic002G263700 Sobic002G263700 Sobic010G152600--Sobic002G263700 Sobic003G058900 Sobic003G058900 Sobic010G152600--Sobic003G058900 Sobic009G017200 Sobic009G017200 Sobic009G059400--Sobic009G017200 Sobic009G059400--Sobic005G198200 Sobic007G218600 Sobic007G218600 Sobic009G059400--Sobic007G218600 Sobic006G144000 Sobic006G144000 Sobic009G059400--Sobic006G144000 Sobic009G059400--Sobic003G393200 Sobic009G125000 Sobic009G125000 Sobic009G059400--Sobic009G125000 Sobic004G345400 Sobic004G345400 Sobic009G059400--Sobic004G345400 Sobic007G148400 Sobic007G148400 Sobic009G059400--Sobic007G148400 Sobic006G224300 Sobic006G224300 Sobic009G059400--Sobic006G224300 Sobic001G097900 Sobic001G097900 Sobic010G192600--Sobic001G097900 Sobic010G192600--Sobic001G474400 Sobic001G358500 Sobic001G358500 Sobic010G192600--Sobic001G358500 Sobic007G118500 Sobic007G118500 Sobic010G192600--Sobic007G118500 Sobic008G085700 Sobic008G085700 Sobic010G192600--Sobic008G085700 Sobic005G110499 Sobic005G110499 Sobic010G192600--Sobic005G110499 Sobic002G364900 Sobic002G364900 Sobic010G192600--Sobic002G364900 Sobic001G115700 Sobic001G115700 Sobic010G192600--Sobic001G115700 Sobic010G192600--Sobic003G304400 Sobic005G198200--Sobic009G059400 Sobic005G198200--Sobic009G113100 Sobic009G137900 Sobic009G137900 Sobic005G198200--Sobic009G137900 Sobic005G072400 Sobic005G072400 Sobic005G198200--Sobic005G072400 Sobic005G198200--Sobic009G017200 Sobic001G472100 Sobic001G472100 Sobic005G198200--Sobic001G472100 Sobic008G111800 Sobic008G111800 Sobic005G198200--Sobic008G111800 Sobic004G180900 Sobic004G180900 Sobic005G198200--Sobic004G180900 Sobic010G077500 Sobic010G077500 Sobic005G198200--Sobic010G077500
Octagon: transcription factors


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