Gene annotation
Transcriptome id Sobic.002G244600.1
Synonym HAP4, ERD16, UBQ1, EMB2167
Functional annotation ubiquitin fusion protein, putative, expressed
UniProt A0A1B6QDB4
Pfam PF11976 PF01020
Panther DB PTHR10666
NCBI CDD KOG0003; Ubiquitin/60s ribosomal protein L40 fusion
KEGG Orthology K02927; RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G52590 : ubiquitin extension protein 1
RAP-DB (Rice) LOC_Os09g27930.1 : ubiquitin fusion protein, putative, expressed
MaizeGDB (Corn) Zm00025a014723 , Zm00025a005173 , Zm00025a001454 , Zm00025a050018 , Zm00025a001458 , Zm00025a036147 , Zm00025a039850 , Zm00025a013490
Brachypodium KQJ91591 , KQK04218 , KQK04204 , KQK04203 , KQK17147 , PNT77709 , PNT77708 , KQK04197 , KQJ90267 , KQJ97255 , KQK07353 , KQJ89932 , KQK16840 , KQJ93343 , KQK16153
Barley HORVU4Hr1G001170.5 , HORVU4Hr1G001170.4 , HORVU7Hr1G113500.1 , HORVU4Hr1G001170.1 , HORVU4Hr1G001170.3 , HORVU4Hr1G001170.2 , HORVU1Hr1G043930.6 , HORVU1Hr1G043930.7 , HORVU1Hr1G043930.4 , HORVU1Hr1G043930.5 , HORVU1Hr1G043930.2 , HORVU1Hr1G043930.3 , HORVU1Hr1G043930.1 , HORVU1Hr1G043930.8 , HORVU1Hr1G043930.9 , HORVU2Hr1G104410.8 , HORVU2Hr1G104410.9 , HORVU2Hr1G104410.1 , HORVU2Hr1G104410.2 , HORVU2Hr1G104410.3 , HORVU2Hr1G104410.4 , HORVU2Hr1G104410.5 , HORVU2Hr1G104410.6 , HORVU2Hr1G104410.7 , HORVU1Hr1G043930.10 , HORVU1Hr1G043930.11 , HORVU6Hr1G020140.8 , HORVU6Hr1G020140.7 , HORVU6Hr1G020140.6 , HORVU6Hr1G020140.5 , HORVU6Hr1G020140.4 , HORVU6Hr1G020140.3 , HORVU6Hr1G020140.2 , HORVU6Hr1G020140.1 , HORVU5Hr1G072680.1 , HORVU5Hr1G072680.2 , HORVU5Hr1G072680.3 , HORVU1Hr1G023660.1 , HORVU1Hr1G023660.2 , HORVU1Hr1G023660.3 , HORVU7Hr1G029070.1 , HORVU2Hr1G104440.3 , HORVU2Hr1G104440.2 , HORVU2Hr1G104440.1 , HORVU2Hr1G104440.7 , HORVU2Hr1G104440.6 , HORVU2Hr1G104440.5 , HORVU2Hr1G104440.4 , HORVU2Hr1G104410.12 , HORVU2Hr1G104410.13 , HORVU2Hr1G104410.10 , HORVU2Hr1G104410.11 , HORVU2Hr1G104410.16 , HORVU2Hr1G104410.17 , HORVU2Hr1G104410.14 , HORVU2Hr1G104410.15 , HORVU2Hr1G104410.18 , HORVU2Hr1G104410.19 , HORVU6Hr1G026260.19 , HORVU6Hr1G026260.16 , HORVU6Hr1G026260.17 , HORVU6Hr1G026260.14 , HORVU6Hr1G026260.15 , HORVU6Hr1G026260.12 , HORVU6Hr1G026260.13 , HORVU6Hr1G026260.10 , HORVU6Hr1G026260.11 , HORVU3Hr1G014180.1 , HORVU6Hr1G026200.6 , HORVU6Hr1G026200.7 , HORVU6Hr1G026200.5 , HORVU6Hr1G026200.2 , HORVU6Hr1G026200.1 , HORVU6Hr1G026200.8 , HORVU6Hr1G026200.9 , HORVU3Hr1G014150.2 , HORVU3Hr1G014150.3 , HORVU3Hr1G014150.1 , HORVU3Hr1G014150.4 , HORVU3Hr1G014150.5 , HORVU6Hr1G026260.8 , HORVU6Hr1G026260.9 , HORVU6Hr1G026260.6 , HORVU6Hr1G026260.7 , HORVU6Hr1G026260.1 , HORVU6Hr1G026260.2 , HORVU1Hr1G087690.9 , HORVU1Hr1G087690.8 , HORVU1Hr1G087690.3 , HORVU1Hr1G087690.2 , HORVU1Hr1G087690.1 , HORVU1Hr1G087690.7 , HORVU1Hr1G087690.6 , HORVU1Hr1G087690.5 , HORVU1Hr1G087690.4 , HORVU7Hr1G103330.13 , HORVU7Hr1G103330.14 , HORVU6Hr1G026200.14 , HORVU6Hr1G026200.10 , HORVU6Hr1G026200.11 , HORVU6Hr1G026200.12 , HORVU6Hr1G026200.13 , HORVU2Hr1G104410.23 , HORVU2Hr1G104410.22 , HORVU2Hr1G104410.21 , HORVU2Hr1G104410.20 , HORVU2Hr1G104410.26 , HORVU2Hr1G104410.25 , HORVU2Hr1G104410.24 , HORVU6Hr1G026260.21 , HORVU6Hr1G026260.20 , HORVU7Hr1G103330.6 , HORVU7Hr1G103330.3 , HORVU7Hr1G103160.1 , HORVU7Hr1G103160.2 , HORVU7Hr1G103160.3 , HORVU7Hr1G103160.4 , HORVU6Hr1G016150.4 , HORVU6Hr1G016150.6 , HORVU6Hr1G016150.1 , HORVU6Hr1G016150.3 , HORVU6Hr1G016150.2 , HORVU7Hr1G029100.1 , HORVU6Hr1G021700.4 , HORVU6Hr1G021700.5 , HORVU6Hr1G021700.3 , HORVU6Hr1G021700.1 , HORVU7Hr1G103170.7 , HORVU7Hr1G103170.6 , HORVU7Hr1G103170.5 , HORVU7Hr1G103170.4 , HORVU7Hr1G103170.2 , HORVU7Hr1G103170.1 , HORVU7Hr1G103170.9 , HORVU7Hr1G103170.8 , HORVU7Hr1G029150.2 , HORVU7Hr1G029150.1 , HORVU1Hr1G087690.17 , HORVU1Hr1G087690.14 , HORVU6Hr1G029050.2 , HORVU6Hr1G029050.3 , HORVU6Hr1G029050.1 , HORVU6Hr1G029050.6 , HORVU6Hr1G029050.7 , HORVU6Hr1G029050.4 , HORVU6Hr1G029050.5 , HORVU6Hr1G029050.8 , HORVU6Hr1G029050.9 , HORVU3Hr1G014180.5 , HORVU3Hr1G014180.4 , HORVU3Hr1G014180.3 , HORVU3Hr1G014180.2 , HORVU4Hr1G061900.4 , HORVU4Hr1G061900.2 , HORVU4Hr1G061900.3 , HORVU4Hr1G061900.1 , HORVU7Hr1G109650.1 , HORVU7Hr1G109650.2 , HORVU5Hr1G065170.2 , HORVU5Hr1G065170.3 , HORVU5Hr1G065170.1 , HORVU6Hr1G076980.1 , HORVU1Hr1G087690.13 , HORVU1Hr1G087690.12 , HORVU1Hr1G087690.11 , HORVU1Hr1G087690.10 , HORVU1Hr1G087690.16 , HORVU1Hr1G087690.15
Wheat TraesCS6D02G109600 , TraesCS5B02G222800 , TraesCS7D02G474300 , TraesCS6A02G136700 , TraesCS4D02G006900 , TraesCS6B02G148000 , TraesCS5A02G196400 , TraesCS2D02G405500 , TraesCS7B02G390900 , TraesCS2A02G458000 , TraesCS2B02G480600 , TraesCS4B02G218100 , TraesCS6A02G148100 , TraesCS6A02G119700 , TraesCS6A02G119700 , TraesCS2D02G458600 , TraesCS5D02G231400 , TraesCS5A02G196700 , TraesCS4A02G086400 , TraesCS5B02G187200 , TraesCS4D02G218400 , TraesCS7D02G474200 , TraesCS2D02G580700 , TraesCS1B02G241200 , TraesCS6A02G087100 , TraesCS6B02G164700 , TraesCS6B02G164700 , TraesCS6B02G176000 , TraesCS4D02G218300 , TraesCS2D02G458700 , TraesCS4B02G008400 , TraesCS6B02G110300 , TraesCS7B02G413800 , TraesCS6D02G137400 , TraesCS6D02G136800 , TraesCS6A02G112400 , TraesCS5D02G269800 , TraesCS6A02G147500 , TraesCS5D02G194700 , TraesCS1A02G227100 , TraesCS2A02G458800 , TraesCS4A02G086300 , TraesCS2B02G480300 , TraesCS2B02G480400 , TraesCSU02G019400 , TraesCS7D02G494400 , TraesCS6D02G125600 , TraesCS7B02G390800 , TraesCS4A02G077000 , TraesCS4A02G077000 , TraesCS2A02G408200 , TraesCS7A02G506300 , TraesCS4B02G218000 , TraesCS2A02G458100 , TraesCS5B02G260700 , TraesCS4A02G306500 , TraesCS6B02G176400 , TraesCS7A02G487500 , TraesCS1D02G228700
Populus PNT11513 , PNT28506


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G066400 cytochrome P450, putative, expressed K00517: indol-3-yl-methylglucosinolate hydroxylase
2 Sobic.001G051100 uncharacterized PE-PGRS family protein PE_PGRS3 precursor, putative, expressed -
3 Sobic.001G158300 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
4 Sobic.010G180200 transcription factor S-II, central domain containing protein, expressed -
5 Sobic.010G212700 tetraspanin family protein, putative, expressed -
6 Sobic.003G022900 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
7 Sobic.001G468000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF677 domain containing protein, putative, expressed -
8 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
9 Sobic.001G128200 RNA recognition motif containing protein, putative, expressed -
10 Sobic.001G137400 ankyrin, putative, expressed -
11 Sobic.004G218000 SET domain containing protein, expressed -
12 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
13 Sobic.001G171100 expressed protein -
14 Sobic.005G163500 dnaJ domain containing protein, expressed -
15 Sobic.002G196500 linker histone H1 and H5 family protein, expressed -
16 Sobic.001G439800 Subtilisin-like serine protease 2("PubMedID : 26759170,PubMedID : 24597475")@OsSub28 - Putative Subtilisin homologue, expressed -
17 Sobic.004G154900 expressed protein -
18 Sobic.004G220200 expressed protein -
19 Sobic.003G007200 aquaporin protein, putative, expressed K09873: aquaporin TIP
20 Sobic.004G035800 uncharacterized protein At4g06744 precursor, putative, expressed -


Gene co-expression network
sample Sobic002G244600 Sobic002G244600 Sobic006G066400 Sobic006G066400 Sobic002G244600--Sobic006G066400 Sobic001G051100 Sobic001G051100 Sobic002G244600--Sobic001G051100 Sobic001G158300 Sobic001G158300 Sobic002G244600--Sobic001G158300 Sobic010G180200 Sobic010G180200 Sobic002G244600--Sobic010G180200 Sobic010G212700 Sobic010G212700 Sobic002G244600--Sobic010G212700 Sobic003G022900 Sobic003G022900 Sobic002G244600--Sobic003G022900 Sobic001G468000 Sobic001G468000 Sobic002G244600--Sobic001G468000 Sobic009G243000 Sobic009G243000 Sobic002G244600--Sobic009G243000 Sobic001G128200 Sobic001G128200 Sobic002G244600--Sobic001G128200 Sobic006G066400--Sobic001G468000 Sobic006G066400--Sobic003G022900 Sobic006G066400--Sobic010G212700 Sobic006G066400--Sobic010G180200 Sobic001G171100 Sobic001G171100 Sobic006G066400--Sobic001G171100 Sobic002G196500 Sobic002G196500 Sobic006G066400--Sobic002G196500 Sobic002G366000 Sobic002G366000 Sobic006G066400--Sobic002G366000 Sobic006G066400--Sobic002G244600 Sobic006G272800 Sobic006G272800 Sobic006G066400--Sobic006G272800 Sobic001G051100--Sobic002G244600 Sobic001G051100--Sobic010G180200 Sobic001G051100--Sobic006G066400 Sobic001G132200 Sobic001G132200 Sobic001G051100--Sobic001G132200 Sobic004G218000 Sobic004G218000 Sobic001G051100--Sobic004G218000 Sobic002G122000 Sobic002G122000 Sobic001G051100--Sobic002G122000 Sobic002G061800 Sobic002G061800 Sobic001G051100--Sobic002G061800 Sobic009G042600 Sobic009G042600 Sobic001G051100--Sobic009G042600 Sobic001G053700 Sobic001G053700 Sobic001G051100--Sobic001G053700 Sobic001G158300--Sobic006G272800 Sobic002G284100 Sobic002G284100 Sobic001G158300--Sobic002G284100 Sobic008G070700 Sobic008G070700 Sobic001G158300--Sobic008G070700 Sobic010G003300 Sobic010G003300 Sobic001G158300--Sobic010G003300 Sobic001G158300--Sobic001G468000 Sobic002G027600 Sobic002G027600 Sobic001G158300--Sobic002G027600 Sobic004G267600 Sobic004G267600 Sobic001G158300--Sobic004G267600 Sobic001G158300--Sobic002G196500 Sobic010G237800 Sobic010G237800 Sobic001G158300--Sobic010G237800 Sobic003G402100 Sobic003G402100 Sobic010G180200--Sobic003G402100 Sobic010G180200--Sobic001G053700 Sobic001G324800 Sobic001G324800 Sobic010G180200--Sobic001G324800 Sobic010G180200--Sobic006G066400 Sobic004G014100 Sobic004G014100 Sobic010G180200--Sobic004G014100 Sobic001G394900 Sobic001G394900 Sobic010G180200--Sobic001G394900 Sobic007G023600 Sobic007G023600 Sobic010G180200--Sobic007G023600 Sobic010G180200--Sobic004G218000 Sobic010G180200--Sobic010G212700 Sobic010G212700--Sobic001G171100 Sobic010G212700--Sobic001G468000 Sobic010G212700--Sobic003G022900 Sobic010G212700--Sobic006G066400 Sobic010G212700--Sobic010G180200 Sobic010G212700--Sobic002G196500 Sobic010G212700--Sobic004G218000 Sobic002G374200 Sobic002G374200 Sobic010G212700--Sobic002G374200 Sobic010G212700--Sobic004G014100 Sobic003G022900--Sobic001G171100 Sobic006G097300 Sobic006G097300 Sobic003G022900--Sobic006G097300 Sobic001G171200 Sobic001G171200 Sobic003G022900--Sobic001G171200 Sobic007G193300 Sobic007G193300 Sobic003G022900--Sobic007G193300 Sobic008G072900 Sobic008G072900 Sobic003G022900--Sobic008G072900 Sobic003G022900--Sobic010G212700 Sobic003G022900--Sobic006G066400 Sobic001G137400 Sobic001G137400 Sobic003G022900--Sobic001G137400 Sobic003G022900--Sobic004G218000 Sobic001G468000--Sobic006G066400 Sobic001G468000--Sobic010G212700 Sobic001G468000--Sobic006G272800 Sobic001G468000--Sobic002G196500 Sobic001G468000--Sobic002G284100 Sobic001G468000--Sobic001G158300 Sobic001G468000--Sobic010G180200 Sobic002G302600 Sobic002G302600 Sobic001G468000--Sobic002G302600 Sobic001G468000--Sobic001G171100 Sobic007G033700 Sobic007G033700 Sobic009G243000--Sobic007G033700 Sobic002G078900 Sobic002G078900 Sobic009G243000--Sobic002G078900 Sobic006G271600 Sobic006G271600 Sobic009G243000--Sobic006G271600 Sobic001G071600 Sobic001G071600 Sobic009G243000--Sobic001G071600 Sobic002G205000 Sobic002G205000 Sobic009G243000--Sobic002G205000 Sobic003G006000 Sobic003G006000 Sobic009G243000--Sobic003G006000 Sobic003G046400 Sobic003G046400 Sobic009G243000--Sobic003G046400 Sobic001G137600 Sobic001G137600 Sobic009G243000--Sobic001G137600 Sobic002G258000 Sobic002G258000 Sobic009G243000--Sobic002G258000 Sobic003G007200 Sobic003G007200 Sobic001G128200--Sobic003G007200 Sobic008G155900 Sobic008G155900 Sobic001G128200--Sobic008G155900 Sobic007G017100 Sobic007G017100 Sobic001G128200--Sobic007G017100 Sobic003G343200 Sobic003G343200 Sobic001G128200--Sobic003G343200 Sobic001G534400 Sobic001G534400 Sobic001G128200--Sobic001G534400 Sobic006G020000 Sobic006G020000 Sobic001G128200--Sobic006G020000 Sobic010G024000 Sobic010G024000 Sobic001G128200--Sobic010G024000 Sobic001G033300 Sobic001G033300 Sobic001G128200--Sobic001G033300 Sobic002G052800 Sobic002G052800 Sobic001G128200--Sobic002G052800
Octagon: transcription factors


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