Gene annotation
Transcriptome id Sobic.002G245400.1
Synonym Sb02g028210, TDT, ATTDT, ATSDAT
Functional annotation citrate transporter, putative, expressed
UniProt C5X3V4
Pfam PF03600
Panther DB PTHR10283 PTHR10283:SF101
NCBI CDD KOG1281; Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters
KEGG Orthology K14445; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G47560 : tonoplast dicarboxylate transporter
RAP-DB (Rice) LOC_Os09g31130.1 : citrate transporter, putative, expressed
MaizeGDB (Corn) Zm00025a047433
Brachypodium KQJ98893 , KQJ90730
Barley HORVU5Hr1G092230.3 , HORVU5Hr1G092230.2 , HORVU5Hr1G092230.1 , HORVU5Hr1G092230.5 , HORVU5Hr1G092230.4 , HORVU7Hr1G050030.3 , HORVU7Hr1G050030.2 , HORVU7Hr1G050030.5 , HORVU7Hr1G050030.4 , HORVU7Hr1G050030.7 , HORVU7Hr1G050030.6 , HORVU7Hr1G050030.9 , HORVU7Hr1G050030.14 , HORVU7Hr1G050030.11 , HORVU7Hr1G050030.13 , HORVU7Hr1G050030.12 , HORVU5Hr1G072780.11 , HORVU5Hr1G072780.10 , HORVU5Hr1G072780.13 , HORVU5Hr1G072780.12 , HORVU5Hr1G072780.15 , HORVU5Hr1G072780.14 , HORVU5Hr1G072780.5 , HORVU5Hr1G072780.4 , HORVU5Hr1G072780.7 , HORVU5Hr1G072780.6 , HORVU5Hr1G072780.1 , HORVU5Hr1G072780.3 , HORVU5Hr1G072780.2 , HORVU5Hr1G072780.9 , HORVU5Hr1G072780.8
Wheat TraesCS5B02G261800 , TraesCS7D02G243000 , TraesCS5A02G263100 , TraesCS5B02G262500 , TraesCS7A02G244400 , TraesCS3A02G183800 , TraesCS5B02G261500 , TraesCSU02G096900 , TraesCS3D02G188000 , TraesCS5D02G270600 , TraesCS3B02G213600
Populus -


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cDNA sequences
Sobic.002G245400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G136600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
2 Sobic.005G228700 metallothionein, putative, expressed -
3 Sobic.003G243600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
4 Sobic.001G158500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LSD1 zinc finger domain containing protein, expressed -
5 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
6 Sobic.001G034100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
7 Sobic.001G147200 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
8 Sobic.002G313800 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
9 Sobic.001G082900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
10 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
11 Sobic.006G228300 ethylene-responsive protein related, putative, expressed -
12 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
13 Sobic.006G163900 homeobox associated leucine zipper, putative, expressed -
14 Sobic.003G416800 lumenal PsbP, putative, expressed -
15 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
17 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
18 Sobic.003G117900 protein kinase, putative, expressed -
19 Sobic.004G020000 translation initiation factor eIF3 subunit, putative, expressed K03245: translation initiation factor 3 subunit J
20 Sobic.004G311500 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR12 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein


Gene co-expression network
sample Sobic002G245400 Sobic002G245400 Sobic004G136600 Sobic004G136600 Sobic002G245400--Sobic004G136600 Sobic005G228700 Sobic005G228700 Sobic002G245400--Sobic005G228700 Sobic003G243600 Sobic003G243600 Sobic002G245400--Sobic003G243600 Sobic001G158500 Sobic001G158500 Sobic002G245400--Sobic001G158500 Sobic002G045300 Sobic002G045300 Sobic002G245400--Sobic002G045300 Sobic001G034100 Sobic001G034100 Sobic002G245400--Sobic001G034100 Sobic001G147200 Sobic001G147200 Sobic002G245400--Sobic001G147200 Sobic002G313800 Sobic002G313800 Sobic002G245400--Sobic002G313800 Sobic001G082900 Sobic001G082900 Sobic002G245400--Sobic001G082900 Sobic004G236300 Sobic004G236300 Sobic004G136600--Sobic004G236300 Sobic004G136600--Sobic003G243600 Sobic001G302200 Sobic001G302200 Sobic004G136600--Sobic001G302200 Sobic003G130800 Sobic003G130800 Sobic004G136600--Sobic003G130800 Sobic006G180200 Sobic006G180200 Sobic004G136600--Sobic006G180200 Sobic004G136600--Sobic002G245400 Sobic003G337000 Sobic003G337000 Sobic004G136600--Sobic003G337000 Sobic002G066400 Sobic002G066400 Sobic004G136600--Sobic002G066400 Sobic002G355300 Sobic002G355300 Sobic004G136600--Sobic002G355300 Sobic001G219300 Sobic001G219300 Sobic005G228700--Sobic001G219300 Sobic004G247000 Sobic004G247000 Sobic005G228700--Sobic004G247000 Sobic003G055700 Sobic003G055700 Sobic005G228700--Sobic003G055700 Sobic001G048200 Sobic001G048200 Sobic005G228700--Sobic001G048200 Sobic005G228700--Sobic002G245400 Sobic009G217900 Sobic009G217900 Sobic005G228700--Sobic009G217900 Sobic004G130900 Sobic004G130900 Sobic005G228700--Sobic004G130900 Sobic001G314500 Sobic001G314500 Sobic005G228700--Sobic001G314500 Sobic002G226400 Sobic002G226400 Sobic005G228700--Sobic002G226400 Sobic001G070000 Sobic001G070000 Sobic003G243600--Sobic001G070000 Sobic007G033800 Sobic007G033800 Sobic003G243600--Sobic007G033800 Sobic003G243600--Sobic004G136600 Sobic001G339500 Sobic001G339500 Sobic003G243600--Sobic001G339500 Sobic003G214500 Sobic003G214500 Sobic003G243600--Sobic003G214500 Sobic010G027000 Sobic010G027000 Sobic003G243600--Sobic010G027000 Sobic006G254100 Sobic006G254100 Sobic003G243600--Sobic006G254100 Sobic003G243600--Sobic001G302200 Sobic003G350800 Sobic003G350800 Sobic003G243600--Sobic003G350800 Sobic004G102400 Sobic004G102400 Sobic001G158500--Sobic004G102400 Sobic001G057800 Sobic001G057800 Sobic001G158500--Sobic001G057800 Sobic002G375300 Sobic002G375300 Sobic001G158500--Sobic002G375300 Sobic003G367451 Sobic003G367451 Sobic001G158500--Sobic003G367451 Sobic002G083266 Sobic002G083266 Sobic001G158500--Sobic002G083266 Sobic001G433400 Sobic001G433400 Sobic001G158500--Sobic001G433400 Sobic002G264400 Sobic002G264400 Sobic001G158500--Sobic002G264400 Sobic002G385900 Sobic002G385900 Sobic001G158500--Sobic002G385900 Sobic001G085900 Sobic001G085900 Sobic001G158500--Sobic001G085900 Sobic002G045300--Sobic001G433400 Sobic010G042100 Sobic010G042100 Sobic002G045300--Sobic010G042100 Sobic003G253000 Sobic003G253000 Sobic002G045300--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic002G045300--Sobic003G220600 Sobic004G049900 Sobic004G049900 Sobic002G045300--Sobic004G049900 Sobic002G045300--Sobic003G367451 Sobic002G045300--Sobic003G130800 Sobic009G135600 Sobic009G135600 Sobic002G045300--Sobic009G135600 Sobic010G101500 Sobic010G101500 Sobic002G045300--Sobic010G101500 Sobic001G034100--Sobic003G130800 Sobic001G034100--Sobic001G147200 Sobic001G034100--Sobic003G367451 Sobic001G034100--Sobic001G433400 Sobic010G149300 Sobic010G149300 Sobic001G034100--Sobic010G149300 Sobic004G284500 Sobic004G284500 Sobic001G034100--Sobic004G284500 Sobic004G272800 Sobic004G272800 Sobic001G034100--Sobic004G272800 Sobic001G034100--Sobic002G045300 Sobic001G281400 Sobic001G281400 Sobic001G034100--Sobic001G281400 Sobic003G019200 Sobic003G019200 Sobic001G147200--Sobic003G019200 Sobic010G246000 Sobic010G246000 Sobic001G147200--Sobic010G246000 Sobic002G118600 Sobic002G118600 Sobic001G147200--Sobic002G118600 Sobic010G204300 Sobic010G204300 Sobic001G147200--Sobic010G204300 Sobic006G228300 Sobic006G228300 Sobic001G147200--Sobic006G228300 Sobic001G399100 Sobic001G399100 Sobic001G147200--Sobic001G399100 Sobic001G538866 Sobic001G538866 Sobic001G147200--Sobic001G538866 Sobic002G374100 Sobic002G374100 Sobic001G147200--Sobic002G374100 Sobic006G263100 Sobic006G263100 Sobic001G147200--Sobic006G263100 Sobic002G293300 Sobic002G293300 Sobic002G313800--Sobic002G293300 Sobic003G367300 Sobic003G367300 Sobic002G313800--Sobic003G367300 Sobic001G434900 Sobic001G434900 Sobic002G313800--Sobic001G434900 Sobic004G320800 Sobic004G320800 Sobic002G313800--Sobic004G320800 Sobic003G002400 Sobic003G002400 Sobic002G313800--Sobic003G002400 Sobic002G313800--Sobic004G247000 Sobic008G016900 Sobic008G016900 Sobic002G313800--Sobic008G016900 Sobic004G350300 Sobic004G350300 Sobic002G313800--Sobic004G350300 Sobic001G162100 Sobic001G162100 Sobic002G313800--Sobic001G162100 Sobic001G082900--Sobic002G293300 Sobic009G231200 Sobic009G231200 Sobic001G082900--Sobic009G231200 Sobic001G436000 Sobic001G436000 Sobic001G082900--Sobic001G436000 Sobic003G238000 Sobic003G238000 Sobic001G082900--Sobic003G238000 Sobic007G140900 Sobic007G140900 Sobic001G082900--Sobic007G140900 Sobic001G420100 Sobic001G420100 Sobic001G082900--Sobic001G420100 Sobic004G059900 Sobic004G059900 Sobic001G082900--Sobic004G059900 Sobic003G032900 Sobic003G032900 Sobic001G082900--Sobic003G032900 Sobic003G034700 Sobic003G034700 Sobic001G082900--Sobic003G034700
Octagon: transcription factors


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