Gene annotation
Transcriptome id Sobic.005G228700.1
Synonym MT2B, Sb05g027670
Functional annotation metallothionein, putative, expressed
UniProt C5Y8K6
Pfam PF01439
Panther DB PTHR33543 PTHR33543:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G02380 : metallothionein 2B
RAP-DB (Rice) LOC_Os03g17870.1 : metallothionein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G228700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G219300 lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
2 Sobic.004G247000 -(PubMedID : 26976818)@"Gln-4(Ortholog in maize:Martin et al., 2006)"(PubMedID : 31659887)@glutamine synthetase, catalytic domain containing protein, expressed K01915: glnA, glutamine synthetase
3 Sobic.003G055700 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin
4 Sobic.001G048200 elongation factor P, putative, expressed -
5 Sobic.002G245400 citrate transporter, putative, expressed K14445: solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
6 Sobic.009G217900 expressed protein K06875: PDCD5, programmed cell death protein 5
7 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
8 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
9 Sobic.002G226400 EF hand family protein, putative, expressed -
10 Sobic.003G003200 ligA, putative, expressed K18482: 4-amino-4-deoxychorismate lyase
11 Sobic.001G034100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
12 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
13 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
14 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
16 Sobic.003G336000 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed K15633: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
17 Sobic.002G033400 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
18 Sobic.004G272300 expressed protein -
19 Sobic.004G069850 - -
20 Sobic.002G363100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A


Gene co-expression network
sample Sobic005G228700 Sobic005G228700 Sobic001G219300 Sobic001G219300 Sobic005G228700--Sobic001G219300 Sobic004G247000 Sobic004G247000 Sobic005G228700--Sobic004G247000 Sobic003G055700 Sobic003G055700 Sobic005G228700--Sobic003G055700 Sobic001G048200 Sobic001G048200 Sobic005G228700--Sobic001G048200 Sobic002G245400 Sobic002G245400 Sobic005G228700--Sobic002G245400 Sobic009G217900 Sobic009G217900 Sobic005G228700--Sobic009G217900 Sobic004G130900 Sobic004G130900 Sobic005G228700--Sobic004G130900 Sobic001G314500 Sobic001G314500 Sobic005G228700--Sobic001G314500 Sobic002G226400 Sobic002G226400 Sobic005G228700--Sobic002G226400 Sobic002G111200 Sobic002G111200 Sobic001G219300--Sobic002G111200 Sobic004G080100 Sobic004G080100 Sobic001G219300--Sobic004G080100 Sobic001G219300--Sobic003G055700 Sobic010G049100 Sobic010G049100 Sobic001G219300--Sobic010G049100 Sobic009G257600 Sobic009G257600 Sobic001G219300--Sobic009G257600 Sobic001G014800 Sobic001G014800 Sobic001G219300--Sobic001G014800 Sobic009G005900 Sobic009G005900 Sobic001G219300--Sobic009G005900 Sobic006G244700 Sobic006G244700 Sobic001G219300--Sobic006G244700 Sobic008G032600 Sobic008G032600 Sobic001G219300--Sobic008G032600 Sobic003G077900 Sobic003G077900 Sobic004G247000--Sobic003G077900 Sobic001G541100 Sobic001G541100 Sobic004G247000--Sobic001G541100 Sobic004G247000--Sobic009G005900 Sobic003G076500 Sobic003G076500 Sobic004G247000--Sobic003G076500 Sobic009G135900 Sobic009G135900 Sobic004G247000--Sobic009G135900 Sobic001G070000 Sobic001G070000 Sobic004G247000--Sobic001G070000 Sobic002G400000 Sobic002G400000 Sobic004G247000--Sobic002G400000 Sobic010G205300 Sobic010G205300 Sobic004G247000--Sobic010G205300 Sobic004G181900 Sobic004G181900 Sobic004G247000--Sobic004G181900 Sobic007G136100 Sobic007G136100 Sobic003G055700--Sobic007G136100 Sobic005G044800 Sobic005G044800 Sobic003G055700--Sobic005G044800 Sobic003G055700--Sobic001G219300 Sobic003G055700--Sobic001G048200 Sobic003G055700--Sobic006G244700 Sobic003G055700--Sobic008G032600 Sobic009G139900 Sobic009G139900 Sobic003G055700--Sobic009G139900 Sobic003G372000 Sobic003G372000 Sobic003G055700--Sobic003G372000 Sobic003G055700--Sobic004G080100 Sobic001G048200--Sobic006G244700 Sobic001G048200--Sobic003G055700 Sobic002G116900 Sobic002G116900 Sobic001G048200--Sobic002G116900 Sobic001G048200--Sobic010G049100 Sobic001G048200--Sobic008G032600 Sobic001G048200--Sobic004G080100 Sobic004G040900 Sobic004G040900 Sobic001G048200--Sobic004G040900 Sobic007G188300 Sobic007G188300 Sobic001G048200--Sobic007G188300 Sobic001G468600 Sobic001G468600 Sobic001G048200--Sobic001G468600 Sobic004G136600 Sobic004G136600 Sobic002G245400--Sobic004G136600 Sobic002G245400--Sobic005G228700 Sobic003G243600 Sobic003G243600 Sobic002G245400--Sobic003G243600 Sobic001G158500 Sobic001G158500 Sobic002G245400--Sobic001G158500 Sobic002G045300 Sobic002G045300 Sobic002G245400--Sobic002G045300 Sobic001G034100 Sobic001G034100 Sobic002G245400--Sobic001G034100 Sobic001G147200 Sobic001G147200 Sobic002G245400--Sobic001G147200 Sobic002G313800 Sobic002G313800 Sobic002G245400--Sobic002G313800 Sobic001G082900 Sobic001G082900 Sobic002G245400--Sobic001G082900 Sobic004G130100 Sobic004G130100 Sobic009G217900--Sobic004G130100 Sobic002G363100 Sobic002G363100 Sobic009G217900--Sobic002G363100 Sobic001G501200 Sobic001G501200 Sobic009G217900--Sobic001G501200 Sobic009G217900--Sobic010G205300 Sobic005G033200 Sobic005G033200 Sobic009G217900--Sobic005G033200 Sobic010G042100 Sobic010G042100 Sobic009G217900--Sobic010G042100 Sobic009G217900--Sobic001G314500 Sobic003G440800 Sobic003G440800 Sobic009G217900--Sobic003G440800 Sobic009G198500 Sobic009G198500 Sobic009G217900--Sobic009G198500 Sobic004G130900--Sobic002G400000 Sobic004G327300 Sobic004G327300 Sobic004G130900--Sobic004G327300 Sobic003G261400 Sobic003G261400 Sobic004G130900--Sobic003G261400 Sobic003G367451 Sobic003G367451 Sobic004G130900--Sobic003G367451 Sobic001G005900 Sobic001G005900 Sobic004G130900--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic004G130900--Sobic007G096700 Sobic004G130900--Sobic009G198500 Sobic010G000900 Sobic010G000900 Sobic004G130900--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic004G130900--Sobic007G168600 Sobic006G212100 Sobic006G212100 Sobic001G314500--Sobic006G212100 Sobic001G314500--Sobic009G198500 Sobic001G314500--Sobic007G168600 Sobic001G388200 Sobic001G388200 Sobic001G314500--Sobic001G388200 Sobic006G232200 Sobic006G232200 Sobic001G314500--Sobic006G232200 Sobic001G054200 Sobic001G054200 Sobic001G314500--Sobic001G054200 Sobic009G004600 Sobic009G004600 Sobic001G314500--Sobic009G004600 Sobic001G314500--Sobic010G205300 Sobic003G217400 Sobic003G217400 Sobic001G314500--Sobic003G217400 Sobic006G097200 Sobic006G097200 Sobic002G226400--Sobic006G097200 Sobic004G133400 Sobic004G133400 Sobic002G226400--Sobic004G133400 Sobic002G204200 Sobic002G204200 Sobic002G226400--Sobic002G204200 Sobic008G089900 Sobic008G089900 Sobic002G226400--Sobic008G089900 Sobic001G020100 Sobic001G020100 Sobic002G226400--Sobic001G020100 Sobic010G023700 Sobic010G023700 Sobic002G226400--Sobic010G023700 Sobic004G275000 Sobic004G275000 Sobic002G226400--Sobic004G275000 Sobic010G135600 Sobic010G135600 Sobic002G226400--Sobic010G135600 Sobic005G172400 Sobic005G172400 Sobic002G226400--Sobic005G172400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.