Gene annotation
Transcriptome id Sobic.003G003200.1
Synonym Sb03g000450
Functional annotation ligA, putative, expressed
UniProt C5XJI9
Pfam PF01063
Panther DB PTHR11825 PTHR11825:SF48
NCBI CDD KOG0975; Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily
KEGG Orthology K18482; 4-amino-4-deoxychorismate lyase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT5G57850 : D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
RAP-DB (Rice) LOC_Os01g13690.2 : ligA, putative, expressed
MaizeGDB (Corn) Zm00025a022787
Brachypodium KQK03499 , KQK03498
Barley HORVU3Hr1G032400.4 , HORVU3Hr1G032400.5 , HORVU3Hr1G032400.1 , HORVU3Hr1G032400.2 , HORVU3Hr1G032400.3
Wheat TraesCS3D02G167700 , TraesCS3A02G160500 , TraesCS3A02G160500 , TraesCS3B02G191100 , TraesCS3B02G191100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G295700 Triacylglycerol lipase like protein (Os)(PubMedID : 27208977)@triacylglycerol lipase like protein, putative, expressed -
2 Sobic.004G097100 F-box family protein, putative, expressed -
3 Sobic.006G187900 "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application"(PubMedID : 24813726)@aminotransferase, classes I and II, domain containing protein, expressed K01762: 1-aminocyclopropane-1-carboxylate synthase
4 Sobic.004G295600 AP2 domain containing protein, expressed -
5 Sobic.004G088000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G269100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
7 Sobic.001G095300 prenylated rab acceptor, putative, expressed -
8 Sobic.005G180500 plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.004G229500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
10 Sobic.001G100501 - -
11 Sobic.008G077550 - -
12 Sobic.004G301500 integral membrane protein, putative, expressed -
13 Sobic.010G076100 - -
14 Sobic.003G207900 transmembrane amino acid transporter protein, putative, expressed K15015: SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter)
15 Sobic.002G184300 heat shock protein DnaJ, putative, expressed -
16 Sobic.003G386700 OsRhmbd5 - Putative Rhomboid homologue, expressed -
17 Sobic.003G144800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G311900 OsSCP47 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
19 Sobic.007G148500 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
20 Sobic.007G216300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein, putative, expressed K04079: HSP90A, molecular chaperone HtpG


Gene co-expression network
sample Sobic003G003200 Sobic003G003200 Sobic001G295700 Sobic001G295700 Sobic003G003200--Sobic001G295700 Sobic004G097100 Sobic004G097100 Sobic003G003200--Sobic004G097100 Sobic006G187900 Sobic006G187900 Sobic003G003200--Sobic006G187900 Sobic004G295600 Sobic004G295600 Sobic003G003200--Sobic004G295600 Sobic004G088000 Sobic004G088000 Sobic003G003200--Sobic004G088000 Sobic002G269100 Sobic002G269100 Sobic003G003200--Sobic002G269100 Sobic001G095300 Sobic001G095300 Sobic003G003200--Sobic001G095300 Sobic005G180500 Sobic005G180500 Sobic003G003200--Sobic005G180500 Sobic004G229500 Sobic004G229500 Sobic003G003200--Sobic004G229500 Sobic002G358300 Sobic002G358300 Sobic001G295700--Sobic002G358300 Sobic001G259700 Sobic001G259700 Sobic001G295700--Sobic001G259700 Sobic001G295700--Sobic002G269100 Sobic004G308900 Sobic004G308900 Sobic001G295700--Sobic004G308900 Sobic001G295700--Sobic004G097100 Sobic001G100501 Sobic001G100501 Sobic001G295700--Sobic001G100501 Sobic002G395300 Sobic002G395300 Sobic001G295700--Sobic002G395300 Sobic004G169200 Sobic004G169200 Sobic001G295700--Sobic004G169200 Sobic003G230100 Sobic003G230100 Sobic001G295700--Sobic003G230100 Sobic004G097100--Sobic003G230100 Sobic004G097100--Sobic004G229500 Sobic004G246600 Sobic004G246600 Sobic004G097100--Sobic004G246600 Sobic004G097100--Sobic006G187900 Sobic009G241801 Sobic009G241801 Sobic004G097100--Sobic009G241801 Sobic005G013500 Sobic005G013500 Sobic004G097100--Sobic005G013500 Sobic002G388900 Sobic002G388900 Sobic004G097100--Sobic002G388900 Sobic004G097100--Sobic004G308900 Sobic002G184300 Sobic002G184300 Sobic004G097100--Sobic002G184300 Sobic006G187900--Sobic004G097100 Sobic006G187900--Sobic004G229500 Sobic006G187900--Sobic005G013500 Sobic006G187900--Sobic004G246600 Sobic006G187900--Sobic002G269100 Sobic001G035100 Sobic001G035100 Sobic006G187900--Sobic001G035100 Sobic009G183900 Sobic009G183900 Sobic006G187900--Sobic009G183900 Sobic006G187900--Sobic004G295600 Sobic006G187900--Sobic002G184300 Sobic004G295600--Sobic002G269100 Sobic001G143100 Sobic001G143100 Sobic004G295600--Sobic001G143100 Sobic002G388800 Sobic002G388800 Sobic004G295600--Sobic002G388800 Sobic004G295600--Sobic006G187900 Sobic001G311900 Sobic001G311900 Sobic004G295600--Sobic001G311900 Sobic004G295600--Sobic004G229500 Sobic004G295600--Sobic005G180500 Sobic010G104300 Sobic010G104300 Sobic004G295600--Sobic010G104300 Sobic004G295600--Sobic004G246600 Sobic010G076100 Sobic010G076100 Sobic004G088000--Sobic010G076100 Sobic007G058400 Sobic007G058400 Sobic004G088000--Sobic007G058400 Sobic010G182200 Sobic010G182200 Sobic004G088000--Sobic010G182200 Sobic010G081100 Sobic010G081100 Sobic004G088000--Sobic010G081100 Sobic009G032000 Sobic009G032000 Sobic004G088000--Sobic009G032000 Sobic004G088000--Sobic005G013500 Sobic004G219800 Sobic004G219800 Sobic004G088000--Sobic004G219800 Sobic001G330400 Sobic001G330400 Sobic004G088000--Sobic001G330400 Sobic002G377000 Sobic002G377000 Sobic004G088000--Sobic002G377000 Sobic002G269100--Sobic001G143100 Sobic002G269100--Sobic004G246600 Sobic002G269100--Sobic004G295600 Sobic002G269100--Sobic004G097100 Sobic002G269100--Sobic004G308900 Sobic002G269100--Sobic002G358300 Sobic009G194400 Sobic009G194400 Sobic002G269100--Sobic009G194400 Sobic002G269100--Sobic004G229500 Sobic002G269100--Sobic006G187900 Sobic010G204600 Sobic010G204600 Sobic001G095300--Sobic010G204600 Sobic002G140300 Sobic002G140300 Sobic001G095300--Sobic002G140300 Sobic003G092900 Sobic003G092900 Sobic001G095300--Sobic003G092900 Sobic003G324400 Sobic003G324400 Sobic001G095300--Sobic003G324400 Sobic002G405600 Sobic002G405600 Sobic001G095300--Sobic002G405600 Sobic001G538866 Sobic001G538866 Sobic001G095300--Sobic001G538866 Sobic002G245800 Sobic002G245800 Sobic001G095300--Sobic002G245800 Sobic009G129000 Sobic009G129000 Sobic001G095300--Sobic009G129000 Sobic006G179500 Sobic006G179500 Sobic001G095300--Sobic006G179500 Sobic008G077550 Sobic008G077550 Sobic005G180500--Sobic008G077550 Sobic002G238600 Sobic002G238600 Sobic005G180500--Sobic002G238600 Sobic010G135100 Sobic010G135100 Sobic005G180500--Sobic010G135100 Sobic005G180500--Sobic004G295600 Sobic005G180500--Sobic001G311900 Sobic005G180500--Sobic004G229500 Sobic002G390000 Sobic002G390000 Sobic005G180500--Sobic002G390000 Sobic003G060100 Sobic003G060100 Sobic005G180500--Sobic003G060100 Sobic004G229400 Sobic004G229400 Sobic005G180500--Sobic004G229400 Sobic004G229500--Sobic004G246600 Sobic004G229500--Sobic005G013500 Sobic004G229500--Sobic004G097100 Sobic003G427800 Sobic003G427800 Sobic004G229500--Sobic003G427800 Sobic004G229500--Sobic009G032000 Sobic004G229500--Sobic004G308900 Sobic004G229500--Sobic009G183900 Sobic009G205500 Sobic009G205500 Sobic004G229500--Sobic009G205500 Sobic004G229500--Sobic002G184300
Octagon: transcription factors


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