Gene annotation
Transcriptome id Sobic.003G386700.2
Synonym Sb03g042510, RBL13, ATRBL13
Functional annotation OsRhmbd5 - Putative Rhomboid homologue, expressed
UniProt C5XET2
Pfam PF01694
Panther DB PTHR12917 PTHR12917:SF21
NCBI CDD KOG2632; Rhomboid family proteins
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0004252serine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT3G59520 : RHOMBOID-like protein 13
RAP-DB (Rice) LOC_Os01g67040.1 : OsRhmbd5 - Putative Rhomboid homologue, expressed
MaizeGDB (Corn) Zm00025a039457
Brachypodium -
Barley HORVU3Hr1G089820.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G187001 - K09422: transcription factor MYB, plant
2 Sobic.004G097100 F-box family protein, putative, expressed -
3 Sobic.010G223600 ubiquitin family protein, putative, expressed K08770: ubiquitin C
4 Sobic.002G388900 Upregulated in cold tolerant sorghum under stress(PubMedID : 26645959)@cytochrome P450 72A1, putative, expressed -
5 Sobic.001G037000 PHD finger protein, putative, expressed -
6 Sobic.001G256700 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
7 Sobic.009G032000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.001G383700 OsCML27 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
9 Sobic.001G195200 cytochrome P450, putative, expressed -
10 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -
11 Sobic.001G422900 zinc finger family protein, putative, expressed -
12 Sobic.004G308900 AP2 domain containing protein, expressed -
13 Sobic.004G219800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.002G339000 OsFBX257 - F-box domain containing protein, expressed -
15 Sobic.004G301000 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
16 Sobic.003G260300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.003G265200 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
18 Sobic.001G481100 DUF581 domain containing protein, expressed -
19 Sobic.003G349600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS1-14 - C2H2 zinc finger protein, expressed -
20 Sobic.002G205300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -


Gene co-expression network
sample Sobic003G386700 Sobic003G386700 Sobic008G187001 Sobic008G187001 Sobic003G386700--Sobic008G187001 Sobic004G097100 Sobic004G097100 Sobic003G386700--Sobic004G097100 Sobic010G223600 Sobic010G223600 Sobic003G386700--Sobic010G223600 Sobic002G388900 Sobic002G388900 Sobic003G386700--Sobic002G388900 Sobic001G037000 Sobic001G037000 Sobic003G386700--Sobic001G037000 Sobic001G256700 Sobic001G256700 Sobic003G386700--Sobic001G256700 Sobic009G032000 Sobic009G032000 Sobic003G386700--Sobic009G032000 Sobic001G383700 Sobic001G383700 Sobic003G386700--Sobic001G383700 Sobic001G195200 Sobic001G195200 Sobic003G386700--Sobic001G195200 Sobic008G187001--Sobic002G388900 Sobic008G187001--Sobic001G256700 Sobic007G036900 Sobic007G036900 Sobic008G187001--Sobic007G036900 Sobic009G224100 Sobic009G224100 Sobic008G187001--Sobic009G224100 Sobic004G219800 Sobic004G219800 Sobic008G187001--Sobic004G219800 Sobic008G187001--Sobic009G032000 Sobic001G330100 Sobic001G330100 Sobic008G187001--Sobic001G330100 Sobic009G122400 Sobic009G122400 Sobic008G187001--Sobic009G122400 Sobic004G352000 Sobic004G352000 Sobic008G187001--Sobic004G352000 Sobic003G230100 Sobic003G230100 Sobic004G097100--Sobic003G230100 Sobic004G229500 Sobic004G229500 Sobic004G097100--Sobic004G229500 Sobic004G246600 Sobic004G246600 Sobic004G097100--Sobic004G246600 Sobic006G187900 Sobic006G187900 Sobic004G097100--Sobic006G187900 Sobic009G241801 Sobic009G241801 Sobic004G097100--Sobic009G241801 Sobic005G013500 Sobic005G013500 Sobic004G097100--Sobic005G013500 Sobic004G097100--Sobic002G388900 Sobic004G308900 Sobic004G308900 Sobic004G097100--Sobic004G308900 Sobic002G184300 Sobic002G184300 Sobic004G097100--Sobic002G184300 Sobic003G393900 Sobic003G393900 Sobic010G223600--Sobic003G393900 Sobic009G036000 Sobic009G036000 Sobic010G223600--Sobic009G036000 Sobic009G247900 Sobic009G247900 Sobic010G223600--Sobic009G247900 Sobic002G339000 Sobic002G339000 Sobic010G223600--Sobic002G339000 Sobic010G223600--Sobic009G122400 Sobic004G169200 Sobic004G169200 Sobic010G223600--Sobic004G169200 Sobic001G471200 Sobic001G471200 Sobic010G223600--Sobic001G471200 Sobic010G223600--Sobic009G224100 Sobic001G035100 Sobic001G035100 Sobic010G223600--Sobic001G035100 Sobic002G388900--Sobic008G187001 Sobic002G388900--Sobic001G256700 Sobic009G144700 Sobic009G144700 Sobic002G388900--Sobic009G144700 Sobic002G388900--Sobic001G330100 Sobic002G388900--Sobic009G241801 Sobic002G388900--Sobic009G032000 Sobic002G388900--Sobic004G352000 Sobic002G388900--Sobic004G219800 Sobic002G388900--Sobic004G308900 Sobic003G249800 Sobic003G249800 Sobic001G037000--Sobic003G249800 Sobic003G063200 Sobic003G063200 Sobic001G037000--Sobic003G063200 Sobic001G422900 Sobic001G422900 Sobic001G037000--Sobic001G422900 Sobic010G204600 Sobic010G204600 Sobic001G037000--Sobic010G204600 Sobic001G067601 Sobic001G067601 Sobic001G037000--Sobic001G067601 Sobic009G016201 Sobic009G016201 Sobic001G037000--Sobic009G016201 Sobic003G265200 Sobic003G265200 Sobic001G037000--Sobic003G265200 Sobic002G205300 Sobic002G205300 Sobic001G037000--Sobic002G205300 Sobic003G181500 Sobic003G181500 Sobic001G037000--Sobic003G181500 Sobic001G256700--Sobic008G187001 Sobic004G004500 Sobic004G004500 Sobic001G256700--Sobic004G004500 Sobic001G256700--Sobic002G388900 Sobic004G294400 Sobic004G294400 Sobic001G256700--Sobic004G294400 Sobic001G256700--Sobic004G219800 Sobic002G395300 Sobic002G395300 Sobic001G256700--Sobic002G395300 Sobic001G256700--Sobic002G339000 Sobic001G256700--Sobic001G330100 Sobic001G256700--Sobic001G195200 Sobic009G032000--Sobic001G256700 Sobic009G032000--Sobic002G388900 Sobic009G032000--Sobic004G219800 Sobic002G358300 Sobic002G358300 Sobic009G032000--Sobic002G358300 Sobic009G032000--Sobic004G308900 Sobic009G032000--Sobic004G246600 Sobic009G032000--Sobic001G330100 Sobic009G032000--Sobic005G013500 Sobic009G032000--Sobic002G395300 Sobic003G202200 Sobic003G202200 Sobic001G383700--Sobic003G202200 Sobic001G383700--Sobic009G247900 Sobic001G449700 Sobic001G449700 Sobic001G383700--Sobic001G449700 Sobic007G149300 Sobic007G149300 Sobic001G383700--Sobic007G149300 Sobic001G383700--Sobic009G036000 Sobic006G263600 Sobic006G263600 Sobic001G383700--Sobic006G263600 Sobic001G383700--Sobic004G169200 Sobic004G191400 Sobic004G191400 Sobic001G383700--Sobic004G191400 Sobic001G383700--Sobic002G395300 Sobic001G195200--Sobic004G294400 Sobic001G195200--Sobic001G256700 Sobic001G195200--Sobic004G308900 Sobic001G195200--Sobic002G358300 Sobic007G122800 Sobic007G122800 Sobic001G195200--Sobic007G122800 Sobic001G195200--Sobic004G004500 Sobic004G108200 Sobic004G108200 Sobic001G195200--Sobic004G108200 Sobic001G195200--Sobic002G395300 Sobic004G191300 Sobic004G191300 Sobic001G195200--Sobic004G191300
Octagon: transcription factors


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