Gene annotation
Transcriptome id Sobic.002G261700.1
Synonym Sb02g029650
Functional annotation expressed protein
UniProt C5X5C3 , C6JS12 , C6JS73
Pfam PF08609
Panther DB PTHR19316 PTHR19316:SF6
NCBI CDD KOG2160; Armadillo/beta-catenin-like repeat-containing protein
KEGG Orthology K14001; SIL1, nucleotide exchange factor SIL1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G51980 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os09g33780.1 : expressed protein
MaizeGDB (Corn) Zm00025a047622
Brachypodium KQJ90979
Barley HORVU5Hr1G078080.1 , HORVU5Hr1G078080.2 , HORVU5Hr1G078080.3
Wheat TraesCS5D02G303400 , TraesCS5B02G295400 , TraesCS5A02G296200
Populus -


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cDNA sequences
Sobic.002G261700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G282700 synthase, putative, expressed K12451: 3,5-epimerase/4-reductase
2 Sobic.002G180300 isochorismate synthase 1, chloroplast precursor, putative, expressed K15040: voltage-dependent anion channel protein 2
3 Sobic.009G016500 expressed protein -
4 Sobic.001G347901 - -
5 Sobic.003G322300 expressed protein -
6 Sobic.007G044400 MSP domain containing protein, expressed -
7 Sobic.003G333800 NADH-cytochrome b5 reductase, putative, expressed K00326: cytochrome-b5 reductase
8 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
9 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
10 Sobic.010G264300 LYR motif containing protein, putative, expressed K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9
11 Sobic.006G038200 receptor protein kinase, putative, expressed -
12 Sobic.002G275900 Ser/Thr protein phosphatase family protein, putative, expressed -
13 Sobic.001G370700 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
14 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
15 Sobic.004G010700 expressed protein -
16 Sobic.002G333800 CSLF8 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed K00770: 1,4-beta-D-xylan synthase
17 Sobic.001G168600 serpin domain containing protein, putative, expressed K13963: serpin B
18 Sobic.002G308300 expressed protein -
19 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
20 Sobic.009G104100 peptidase, M24 family protein, putative, expressed -


Gene co-expression network
sample Sobic002G261700 Sobic002G261700 Sobic004G282700 Sobic004G282700 Sobic002G261700--Sobic004G282700 Sobic002G180300 Sobic002G180300 Sobic002G261700--Sobic002G180300 Sobic009G016500 Sobic009G016500 Sobic002G261700--Sobic009G016500 Sobic001G347901 Sobic001G347901 Sobic002G261700--Sobic001G347901 Sobic003G322300 Sobic003G322300 Sobic002G261700--Sobic003G322300 Sobic007G044400 Sobic007G044400 Sobic002G261700--Sobic007G044400 Sobic003G333800 Sobic003G333800 Sobic002G261700--Sobic003G333800 Sobic002G101000 Sobic002G101000 Sobic002G261700--Sobic002G101000 Sobic003G170300 Sobic003G170300 Sobic002G261700--Sobic003G170300 Sobic004G282700--Sobic003G170300 Sobic010G264300 Sobic010G264300 Sobic004G282700--Sobic010G264300 Sobic004G282700--Sobic002G180300 Sobic001G096100 Sobic001G096100 Sobic004G282700--Sobic001G096100 Sobic002G356400 Sobic002G356400 Sobic004G282700--Sobic002G356400 Sobic001G304400 Sobic001G304400 Sobic004G282700--Sobic001G304400 Sobic006G038200 Sobic006G038200 Sobic004G282700--Sobic006G038200 Sobic005G194900 Sobic005G194900 Sobic004G282700--Sobic005G194900 Sobic008G132400 Sobic008G132400 Sobic004G282700--Sobic008G132400 Sobic002G309700 Sobic002G309700 Sobic002G180300--Sobic002G309700 Sobic006G013000 Sobic006G013000 Sobic002G180300--Sobic006G013000 Sobic002G180300--Sobic002G356400 Sobic009G179100 Sobic009G179100 Sobic002G180300--Sobic009G179100 Sobic009G115700 Sobic009G115700 Sobic002G180300--Sobic009G115700 Sobic002G180300--Sobic010G264300 Sobic001G404800 Sobic001G404800 Sobic002G180300--Sobic001G404800 Sobic001G370700 Sobic001G370700 Sobic002G180300--Sobic001G370700 Sobic002G308300 Sobic002G308300 Sobic002G180300--Sobic002G308300 Sobic009G016500--Sobic001G347901 Sobic009G016500--Sobic002G308300 Sobic001G286200 Sobic001G286200 Sobic009G016500--Sobic001G286200 Sobic001G473400 Sobic001G473400 Sobic009G016500--Sobic001G473400 Sobic009G016500--Sobic001G370700 Sobic009G016500--Sobic010G264300 Sobic010G258000 Sobic010G258000 Sobic009G016500--Sobic010G258000 Sobic002G078300 Sobic002G078300 Sobic009G016500--Sobic002G078300 Sobic008G136800 Sobic008G136800 Sobic009G016500--Sobic008G136800 Sobic004G342400 Sobic004G342400 Sobic001G347901--Sobic004G342400 Sobic001G347901--Sobic002G308300 Sobic001G347901--Sobic009G016500 Sobic001G347901--Sobic009G179100 Sobic001G347901--Sobic001G370700 Sobic009G233400 Sobic009G233400 Sobic001G347901--Sobic009G233400 Sobic002G415500 Sobic002G415500 Sobic001G347901--Sobic002G415500 Sobic009G173500 Sobic009G173500 Sobic001G347901--Sobic009G173500 Sobic001G334300 Sobic001G334300 Sobic001G347901--Sobic001G334300 Sobic003G238500 Sobic003G238500 Sobic003G322300--Sobic003G238500 Sobic003G322300--Sobic001G286200 Sobic009G001900 Sobic009G001900 Sobic003G322300--Sobic009G001900 Sobic002G395000 Sobic002G395000 Sobic003G322300--Sobic002G395000 Sobic006G203900 Sobic006G203900 Sobic003G322300--Sobic006G203900 Sobic003G322300--Sobic002G078300 Sobic002G296200 Sobic002G296200 Sobic003G322300--Sobic002G296200 Sobic003G322300--Sobic002G180300 Sobic003G322300--Sobic002G356400 Sobic001G196100 Sobic001G196100 Sobic007G044400--Sobic001G196100 Sobic009G189200 Sobic009G189200 Sobic007G044400--Sobic009G189200 Sobic001G116000 Sobic001G116000 Sobic007G044400--Sobic001G116000 Sobic001G026600 Sobic001G026600 Sobic007G044400--Sobic001G026600 Sobic002G313600 Sobic002G313600 Sobic007G044400--Sobic002G313600 Sobic006G102900 Sobic006G102900 Sobic007G044400--Sobic006G102900 Sobic009G059500 Sobic009G059500 Sobic007G044400--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic007G044400--Sobic002G186900 Sobic007G183800 Sobic007G183800 Sobic007G044400--Sobic007G183800 Sobic002G379600 Sobic002G379600 Sobic003G333800--Sobic002G379600 Sobic009G101700 Sobic009G101700 Sobic003G333800--Sobic009G101700 Sobic003G333800--Sobic004G342400 Sobic003G333800--Sobic009G179100 Sobic003G333800--Sobic002G101000 Sobic001G410200 Sobic001G410200 Sobic003G333800--Sobic001G410200 Sobic003G333800--Sobic010G264300 Sobic009G144300 Sobic009G144300 Sobic003G333800--Sobic009G144300 Sobic003G333800--Sobic001G370700 Sobic009G104100 Sobic009G104100 Sobic002G101000--Sobic009G104100 Sobic007G220900 Sobic007G220900 Sobic002G101000--Sobic007G220900 Sobic007G029400 Sobic007G029400 Sobic002G101000--Sobic007G029400 Sobic002G101000--Sobic009G179100 Sobic005G050500 Sobic005G050500 Sobic002G101000--Sobic005G050500 Sobic002G101000--Sobic009G101700 Sobic002G054000 Sobic002G054000 Sobic002G101000--Sobic002G054000 Sobic002G101000--Sobic004G342400 Sobic004G349700 Sobic004G349700 Sobic002G101000--Sobic004G349700 Sobic009G240700 Sobic009G240700 Sobic003G170300--Sobic009G240700 Sobic008G150300 Sobic008G150300 Sobic003G170300--Sobic008G150300 Sobic003G170300--Sobic001G473400 Sobic004G155100 Sobic004G155100 Sobic003G170300--Sobic004G155100 Sobic003G170300--Sobic004G282700 Sobic003G170300--Sobic002G180300 Sobic003G170300--Sobic002G308300 Sobic001G282500 Sobic001G282500 Sobic003G170300--Sobic001G282500 Sobic003G170300--Sobic010G264300
Octagon: transcription factors


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