Gene annotation
Transcriptome id Sobic.002G310000.3
Synonym Sb02g033980
Functional annotation PPR repeat containing protein, expressed
UniProt C5X9A3
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF269
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G15980 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os12g21930.2 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a018377 , Zm00025a018378 , Zm00025a048132
Brachypodium KQJ86862 , KQJ86861 , KQJ86860 , KQJ86859
Barley HORVU2Hr1G106290.4 , HORVU2Hr1G106290.5 , HORVU2Hr1G106290.6 , HORVU2Hr1G106290.7 , HORVU2Hr1G106290.1 , HORVU2Hr1G106290.2 , HORVU2Hr1G106290.3
Wheat -
Populus -


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cDNA sequences
Sobic.002G310000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G105200 PPR repeat containing protein, expressed -
2 Sobic.003G188300 expressed protein -
3 Sobic.002G082100 serine/threonine-protein kinase, putative, expressed -
4 Sobic.002G145000 DNA-directed RNA polymerase subunit, putative, expressed K03011: RPB3, DNA-directed RNA polymerase II subunit RPB3
5 Sobic.002G422000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Myb transcription factor, putative, expressed -
6 Sobic.001G261900 caffeine-induced death protein 1, putative, expressed -
7 Sobic.003G193200 expressed protein -
8 Sobic.009G105800 FHA domain containing protein, putative, expressed K13108: smad nuclear-interacting protein 1
9 Sobic.010G110332 - -
10 Sobic.006G128300 DUF565 domain containing protein, putative, expressed -
11 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
12 Sobic.002G340200 expressed protein -
13 Sobic.004G294700 F-box family protein, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
14 Sobic.010G260000 pentatricopeptide, putative, expressed -
15 Sobic.005G026000 expressed protein -
16 Sobic.003G404300 expressed protein K11368: ENY2, DC6, enhancer of yellow 2 transcription factor
17 Sobic.007G132200 DNA-repair protein complementing XP-C cells, putative, expressed K10838: xeroderma pigmentosum group C-complementing protein
18 Sobic.006G031800 - -
19 Sobic.002G377800 heat shock protein DnaJ, putative, expressed -
20 Sobic.010G171600 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04733: interleukin-1 receptor-associated kinase 4


Gene co-expression network
sample Sobic002G310000 Sobic002G310000 Sobic009G105200 Sobic009G105200 Sobic002G310000--Sobic009G105200 Sobic003G188300 Sobic003G188300 Sobic002G310000--Sobic003G188300 Sobic002G082100 Sobic002G082100 Sobic002G310000--Sobic002G082100 Sobic002G145000 Sobic002G145000 Sobic002G310000--Sobic002G145000 Sobic002G422000 Sobic002G422000 Sobic002G310000--Sobic002G422000 Sobic001G261900 Sobic001G261900 Sobic002G310000--Sobic001G261900 Sobic003G193200 Sobic003G193200 Sobic002G310000--Sobic003G193200 Sobic009G105800 Sobic009G105800 Sobic002G310000--Sobic009G105800 Sobic010G110332 Sobic010G110332 Sobic002G310000--Sobic010G110332 Sobic010G228700 Sobic010G228700 Sobic009G105200--Sobic010G228700 Sobic001G544500 Sobic001G544500 Sobic009G105200--Sobic001G544500 Sobic007G000300 Sobic007G000300 Sobic009G105200--Sobic007G000300 Sobic009G005400 Sobic009G005400 Sobic009G105200--Sobic009G005400 Sobic006G275000 Sobic006G275000 Sobic009G105200--Sobic006G275000 Sobic002G052400 Sobic002G052400 Sobic009G105200--Sobic002G052400 Sobic007G225000 Sobic007G225000 Sobic009G105200--Sobic007G225000 Sobic010G100800 Sobic010G100800 Sobic009G105200--Sobic010G100800 Sobic009G105200--Sobic001G261900 Sobic001G451300 Sobic001G451300 Sobic003G188300--Sobic001G451300 Sobic001G501800 Sobic001G501800 Sobic003G188300--Sobic001G501800 Sobic003G188300--Sobic007G000300 Sobic010G138900 Sobic010G138900 Sobic003G188300--Sobic010G138900 Sobic010G089800 Sobic010G089800 Sobic003G188300--Sobic010G089800 Sobic006G269800 Sobic006G269800 Sobic003G188300--Sobic006G269800 Sobic002G145800 Sobic002G145800 Sobic003G188300--Sobic002G145800 Sobic003G052800 Sobic003G052800 Sobic003G188300--Sobic003G052800 Sobic010G262100 Sobic010G262100 Sobic003G188300--Sobic010G262100 Sobic002G377800 Sobic002G377800 Sobic002G082100--Sobic002G377800 Sobic002G082100--Sobic009G105200 Sobic004G129600 Sobic004G129600 Sobic002G082100--Sobic004G129600 Sobic006G238400 Sobic006G238400 Sobic002G082100--Sobic006G238400 Sobic002G082100--Sobic010G138900 Sobic007G159200 Sobic007G159200 Sobic002G082100--Sobic007G159200 Sobic002G052700 Sobic002G052700 Sobic002G082100--Sobic002G052700 Sobic002G082100--Sobic001G451300 Sobic010G085200 Sobic010G085200 Sobic002G082100--Sobic010G085200 Sobic004G294700 Sobic004G294700 Sobic002G145000--Sobic004G294700 Sobic006G181000 Sobic006G181000 Sobic002G145000--Sobic006G181000 Sobic004G182900 Sobic004G182900 Sobic002G145000--Sobic004G182900 Sobic001G043800 Sobic001G043800 Sobic002G145000--Sobic001G043800 Sobic004G086700 Sobic004G086700 Sobic002G145000--Sobic004G086700 Sobic007G159000 Sobic007G159000 Sobic002G145000--Sobic007G159000 Sobic003G443500 Sobic003G443500 Sobic002G145000--Sobic003G443500 Sobic001G465700 Sobic001G465700 Sobic002G145000--Sobic001G465700 Sobic006G260800 Sobic006G260800 Sobic002G145000--Sobic006G260800 Sobic004G016400 Sobic004G016400 Sobic002G422000--Sobic004G016400 Sobic004G033700 Sobic004G033700 Sobic002G422000--Sobic004G033700 Sobic001G078400 Sobic001G078400 Sobic002G422000--Sobic001G078400 Sobic006G092000 Sobic006G092000 Sobic002G422000--Sobic006G092000 Sobic007G126400 Sobic007G126400 Sobic002G422000--Sobic007G126400 Sobic002G422000--Sobic002G310000 Sobic009G063100 Sobic009G063100 Sobic002G422000--Sobic009G063100 Sobic007G029700 Sobic007G029700 Sobic002G422000--Sobic007G029700 Sobic002G422000--Sobic003G443500 Sobic001G261900--Sobic010G100800 Sobic007G212300 Sobic007G212300 Sobic001G261900--Sobic007G212300 Sobic004G107200 Sobic004G107200 Sobic001G261900--Sobic004G107200 Sobic004G176000 Sobic004G176000 Sobic001G261900--Sobic004G176000 Sobic006G119400 Sobic006G119400 Sobic001G261900--Sobic006G119400 Sobic008G132900 Sobic008G132900 Sobic001G261900--Sobic008G132900 Sobic004G351800 Sobic004G351800 Sobic001G261900--Sobic004G351800 Sobic001G261900--Sobic007G000300 Sobic007G065100 Sobic007G065100 Sobic001G261900--Sobic007G065100 Sobic002G339300 Sobic002G339300 Sobic003G193200--Sobic002G339300 Sobic002G418600 Sobic002G418600 Sobic003G193200--Sobic002G418600 Sobic003G193200--Sobic006G119400 Sobic003G193200--Sobic010G100800 Sobic009G052700 Sobic009G052700 Sobic003G193200--Sobic009G052700 Sobic001G501300 Sobic001G501300 Sobic003G193200--Sobic001G501300 Sobic005G026000 Sobic005G026000 Sobic003G193200--Sobic005G026000 Sobic001G124100 Sobic001G124100 Sobic003G193200--Sobic001G124100 Sobic002G031700 Sobic002G031700 Sobic003G193200--Sobic002G031700 Sobic009G105800--Sobic007G000300 Sobic009G105800--Sobic010G228700 Sobic010G078900 Sobic010G078900 Sobic009G105800--Sobic010G078900 Sobic009G182600 Sobic009G182600 Sobic009G105800--Sobic009G182600 Sobic009G105800--Sobic001G261900 Sobic009G126300 Sobic009G126300 Sobic009G105800--Sobic009G126300 Sobic005G220000 Sobic005G220000 Sobic009G105800--Sobic005G220000 Sobic004G237100 Sobic004G237100 Sobic009G105800--Sobic004G237100 Sobic003G379200 Sobic003G379200 Sobic009G105800--Sobic003G379200 Sobic010G110400 Sobic010G110400 Sobic010G110332--Sobic010G110400 Sobic001G060500 Sobic001G060500 Sobic010G110332--Sobic001G060500 Sobic004G248400 Sobic004G248400 Sobic010G110332--Sobic004G248400 Sobic010G110332--Sobic009G052700 Sobic010G110332--Sobic002G418600 Sobic006G233700 Sobic006G233700 Sobic010G110332--Sobic006G233700 Sobic003G125900 Sobic003G125900 Sobic010G110332--Sobic003G125900 Sobic002G181000 Sobic002G181000 Sobic010G110332--Sobic002G181000 Sobic003G334100 Sobic003G334100 Sobic010G110332--Sobic003G334100
Octagon: transcription factors


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