Gene annotation
Transcriptome id Sobic.002G357600.1,Sobic.002G357600.2
Synonym Sb02g037870
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
lipase class 3 family protein, putative, expressed
UniProt A0A1W0W785 , C5XD28
Pfam -
Panther DB PTHR31479 PTHR31479:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G50890 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os07g39810.1 : lipase class 3 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a015049 , Zm00025a048560
Brachypodium PNT74854 , PNT74855 , KQK15474
Barley HORVU2Hr1G035680.2 , HORVU2Hr1G035680.1
Wheat TraesCS2D02G195000 , TraesCS2A02G192500 , TraesCS2B02G214300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G082850 - -
2 Sobic.009G148700 amidophosphoribosyltransferase, chloroplast precursor, putative, expressed K00764: purF, amidophosphoribosyltransferase
3 Sobic.003G049700 glyoxalase family protein, putative, expressed -
4 Sobic.003G124100 phenazine biosynthesis protein, putative, expressed -
5 Sobic.002G385100 40S ribosomal protein S9-2, putative, expressed K02997: RP-S9e, small subunit ribosomal protein S9e
6 Sobic.004G262400 expressed protein -
7 Sobic.007G159450 - -
8 Sobic.002G328200 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
9 Sobic.001G044400 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
10 Sobic.009G171500 expressed protein -
11 Sobic.001G382900 HAD superfamily phosphatase, putative, expressed -
12 Sobic.004G171700 U-box domain-containing protein, putative, expressed -
13 Sobic.003G250700 fasciclin domain containing protein, expressed -
14 Sobic.004G064400 class I glutamine amidotransferase, putative, expressed -
15 Sobic.001G107100 "SRS5(Ortholog in rice:Segami, 2012)"(PubMedID : 31659833)@tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
16 Sobic.003G110200 NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3
17 Sobic.003G414800 DUF567 domain containing protein, putative, expressed -
18 Sobic.006G062433 - -
19 Sobic.002G328400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed -
20 Sobic.001G190100 serine/threonine-protein kinase receptor precursor, putative, expressed -


Gene co-expression network
sample Sobic002G357600 Sobic002G357600 Sobic010G082850 Sobic010G082850 Sobic002G357600--Sobic010G082850 Sobic009G148700 Sobic009G148700 Sobic002G357600--Sobic009G148700 Sobic003G049700 Sobic003G049700 Sobic002G357600--Sobic003G049700 Sobic003G124100 Sobic003G124100 Sobic002G357600--Sobic003G124100 Sobic002G385100 Sobic002G385100 Sobic002G357600--Sobic002G385100 Sobic004G262400 Sobic004G262400 Sobic002G357600--Sobic004G262400 Sobic007G159450 Sobic007G159450 Sobic002G357600--Sobic007G159450 Sobic002G328200 Sobic002G328200 Sobic002G357600--Sobic002G328200 Sobic001G044400 Sobic001G044400 Sobic002G357600--Sobic001G044400 Sobic007G134900 Sobic007G134900 Sobic010G082850--Sobic007G134900 Sobic001G533500 Sobic001G533500 Sobic010G082850--Sobic001G533500 Sobic004G252100 Sobic004G252100 Sobic010G082850--Sobic004G252100 Sobic008G094600 Sobic008G094600 Sobic010G082850--Sobic008G094600 Sobic010G230700 Sobic010G230700 Sobic010G082850--Sobic010G230700 Sobic002G115000 Sobic002G115000 Sobic010G082850--Sobic002G115000 Sobic009G223300 Sobic009G223300 Sobic010G082850--Sobic009G223300 Sobic010G076400 Sobic010G076400 Sobic010G082850--Sobic010G076400 Sobic003G296800 Sobic003G296800 Sobic010G082850--Sobic003G296800 Sobic002G424800 Sobic002G424800 Sobic009G148700--Sobic002G424800 Sobic001G449700 Sobic001G449700 Sobic009G148700--Sobic001G449700 Sobic005G109000 Sobic005G109000 Sobic009G148700--Sobic005G109000 Sobic004G241100 Sobic004G241100 Sobic009G148700--Sobic004G241100 Sobic001G259700 Sobic001G259700 Sobic009G148700--Sobic001G259700 Sobic006G075500 Sobic006G075500 Sobic009G148700--Sobic006G075500 Sobic007G123300 Sobic007G123300 Sobic009G148700--Sobic007G123300 Sobic003G102200 Sobic003G102200 Sobic009G148700--Sobic003G102200 Sobic002G319500 Sobic002G319500 Sobic009G148700--Sobic002G319500 Sobic004G191400 Sobic004G191400 Sobic003G049700--Sobic004G191400 Sobic007G122800 Sobic007G122800 Sobic003G049700--Sobic007G122800 Sobic004G064500 Sobic004G064500 Sobic003G049700--Sobic004G064500 Sobic009G192600 Sobic009G192600 Sobic003G049700--Sobic009G192600 Sobic002G189100 Sobic002G189100 Sobic003G049700--Sobic002G189100 Sobic003G228900 Sobic003G228900 Sobic003G049700--Sobic003G228900 Sobic001G267600 Sobic001G267600 Sobic003G049700--Sobic001G267600 Sobic006G007900 Sobic006G007900 Sobic003G049700--Sobic006G007900 Sobic002G358300 Sobic002G358300 Sobic003G049700--Sobic002G358300 Sobic010G195500 Sobic010G195500 Sobic003G124100--Sobic010G195500 Sobic003G417350 Sobic003G417350 Sobic003G124100--Sobic003G417350 Sobic002G070200 Sobic002G070200 Sobic003G124100--Sobic002G070200 Sobic004G302200 Sobic004G302200 Sobic003G124100--Sobic004G302200 Sobic004G186500 Sobic004G186500 Sobic003G124100--Sobic004G186500 Sobic003G357100 Sobic003G357100 Sobic003G124100--Sobic003G357100 Sobic010G268400 Sobic010G268400 Sobic003G124100--Sobic010G268400 Sobic007G127100 Sobic007G127100 Sobic003G124100--Sobic007G127100 Sobic003G416300 Sobic003G416300 Sobic003G124100--Sobic003G416300 Sobic004G331400 Sobic004G331400 Sobic002G385100--Sobic004G331400 Sobic004G103800 Sobic004G103800 Sobic002G385100--Sobic004G103800 Sobic004G104300 Sobic004G104300 Sobic002G385100--Sobic004G104300 Sobic006G221200 Sobic006G221200 Sobic002G385100--Sobic006G221200 Sobic007G019000 Sobic007G019000 Sobic002G385100--Sobic007G019000 Sobic010G166100 Sobic010G166100 Sobic002G385100--Sobic010G166100 Sobic007G178600 Sobic007G178600 Sobic002G385100--Sobic007G178600 Sobic004G104100 Sobic004G104100 Sobic002G385100--Sobic004G104100 Sobic006G260400 Sobic006G260400 Sobic002G385100--Sobic006G260400 Sobic004G216300 Sobic004G216300 Sobic004G262400--Sobic004G216300 Sobic006G075400 Sobic006G075400 Sobic004G262400--Sobic006G075400 Sobic007G002800 Sobic007G002800 Sobic004G262400--Sobic007G002800 Sobic003G260300 Sobic003G260300 Sobic004G262400--Sobic003G260300 Sobic007G017500 Sobic007G017500 Sobic004G262400--Sobic007G017500 Sobic010G182200 Sobic010G182200 Sobic004G262400--Sobic010G182200 Sobic002G175100 Sobic002G175100 Sobic004G262400--Sobic002G175100 Sobic002G375100 Sobic002G375100 Sobic004G262400--Sobic002G375100 Sobic001G313600 Sobic001G313600 Sobic004G262400--Sobic001G313600 Sobic001G059700 Sobic001G059700 Sobic007G159450--Sobic001G059700 Sobic009G088900 Sobic009G088900 Sobic007G159450--Sobic009G088900 Sobic003G053400 Sobic003G053400 Sobic007G159450--Sobic003G053400 Sobic001G382900 Sobic001G382900 Sobic007G159450--Sobic001G382900 Sobic010G085800 Sobic010G085800 Sobic007G159450--Sobic010G085800 Sobic004G297900 Sobic004G297900 Sobic007G159450--Sobic004G297900 Sobic009G109000 Sobic009G109000 Sobic007G159450--Sobic009G109000 Sobic008G005100 Sobic008G005100 Sobic007G159450--Sobic008G005100 Sobic009G232100 Sobic009G232100 Sobic007G159450--Sobic009G232100 Sobic002G407100 Sobic002G407100 Sobic002G328200--Sobic002G407100 Sobic009G121900 Sobic009G121900 Sobic002G328200--Sobic009G121900 Sobic004G028400 Sobic004G028400 Sobic002G328200--Sobic004G028400 Sobic003G110200 Sobic003G110200 Sobic002G328200--Sobic003G110200 Sobic006G266300 Sobic006G266300 Sobic002G328200--Sobic006G266300 Sobic010G238800 Sobic010G238800 Sobic002G328200--Sobic010G238800 Sobic006G131600 Sobic006G131600 Sobic002G328200--Sobic006G131600 Sobic009G065300 Sobic009G065300 Sobic002G328200--Sobic009G065300 Sobic002G092801 Sobic002G092801 Sobic002G328200--Sobic002G092801 Sobic004G161751 Sobic004G161751 Sobic001G044400--Sobic004G161751 Sobic006G240600 Sobic006G240600 Sobic001G044400--Sobic006G240600 Sobic003G426400 Sobic003G426400 Sobic001G044400--Sobic003G426400 Sobic006G154500 Sobic006G154500 Sobic001G044400--Sobic006G154500 Sobic009G145500 Sobic009G145500 Sobic001G044400--Sobic009G145500 Sobic003G264600 Sobic003G264600 Sobic001G044400--Sobic003G264600 Sobic004G203700 Sobic004G203700 Sobic001G044400--Sobic004G203700 Sobic001G318500 Sobic001G318500 Sobic001G044400--Sobic001G318500 Sobic003G043600 Sobic003G043600 Sobic001G044400--Sobic003G043600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.