Gene annotation
Transcriptome id Sobic.002G398800.1
Synonym Sb02g041350
Functional annotation BSD domain-containing protein, putative, expressed
UniProt A0A1B6QG00
Pfam PF03909
Panther DB PTHR16019 PTHR16019:SF5
NCBI CDD KOG2690; Uncharacterized conserved protein, contains BSD domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G03350 : BSD domain-containing protein
RAP-DB (Rice) LOC_Os07g45310.1 : BSD domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a002582 , Zm00025a048979
Brachypodium KQK14922
Barley HORVU2Hr1G024900.3 , HORVU2Hr1G024900.2 , HORVU2Hr1G024900.1 , HORVU2Hr1G024900.5 , HORVU2Hr1G024900.4
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G163600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
2 Sobic.010G210000 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
3 Sobic.003G104700 Rer1 protein, putative, expressed -
4 Sobic.002G296300 expressed protein -
5 Sobic.001G041100 RNA recognition motif containing protein, putative, expressed K12833: pre-mRNA branch site protein p14
6 Sobic.006G139700 OsFBL19 - F-box domain and LRR containing protein, expressed K10273: F-box and leucine-rich repeat protein 7
7 Sobic.006G010600 peptidyl-prolyl cis-trans isomerase, putative, expressed K09578: peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
8 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
9 Sobic.002G196350 - K14011: UBXN6, UBX domain-containing protein 6
10 Sobic.009G153600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NC domain-containing protein, putative, expressed -
11 Sobic.002G372700 DGCR14, putative, expressed K13118: protein DGCR14
12 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
13 Sobic.008G179500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
14 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
15 Sobic.003G127700 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
16 Sobic.010G204300 expressed protein -
17 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
18 Sobic.001G331900 expressed protein -
19 Sobic.010G047400 "HGW(Ortholog in rice:Li et al., 2012)"(PubMedID : 31659929)@proline-rich cell wall protein-like, putative, expressed -
20 Sobic.004G284500 ORM1, putative, expressed -


Gene co-expression network
sample Sobic002G398800 Sobic002G398800 Sobic010G163600 Sobic010G163600 Sobic002G398800--Sobic010G163600 Sobic010G210000 Sobic010G210000 Sobic002G398800--Sobic010G210000 Sobic003G104700 Sobic003G104700 Sobic002G398800--Sobic003G104700 Sobic002G296300 Sobic002G296300 Sobic002G398800--Sobic002G296300 Sobic001G041100 Sobic001G041100 Sobic002G398800--Sobic001G041100 Sobic006G139700 Sobic006G139700 Sobic002G398800--Sobic006G139700 Sobic006G010600 Sobic006G010600 Sobic002G398800--Sobic006G010600 Sobic003G362400 Sobic003G362400 Sobic002G398800--Sobic003G362400 Sobic002G196350 Sobic002G196350 Sobic002G398800--Sobic002G196350 Sobic010G213400 Sobic010G213400 Sobic010G163600--Sobic010G213400 Sobic006G141500 Sobic006G141500 Sobic010G163600--Sobic006G141500 Sobic004G300900 Sobic004G300900 Sobic010G163600--Sobic004G300900 Sobic010G163600--Sobic003G362400 Sobic004G284500 Sobic004G284500 Sobic010G163600--Sobic004G284500 Sobic001G445800 Sobic001G445800 Sobic010G163600--Sobic001G445800 Sobic002G046100 Sobic002G046100 Sobic010G163600--Sobic002G046100 Sobic003G249800 Sobic003G249800 Sobic010G163600--Sobic003G249800 Sobic002G078400 Sobic002G078400 Sobic010G163600--Sobic002G078400 Sobic003G018600 Sobic003G018600 Sobic010G210000--Sobic003G018600 Sobic002G376500 Sobic002G376500 Sobic010G210000--Sobic002G376500 Sobic006G115000 Sobic006G115000 Sobic010G210000--Sobic006G115000 Sobic010G210000--Sobic003G362400 Sobic009G012700 Sobic009G012700 Sobic010G210000--Sobic009G012700 Sobic009G050200 Sobic009G050200 Sobic010G210000--Sobic009G050200 Sobic003G073900 Sobic003G073900 Sobic010G210000--Sobic003G073900 Sobic001G018800 Sobic001G018800 Sobic010G210000--Sobic001G018800 Sobic004G062400 Sobic004G062400 Sobic010G210000--Sobic004G062400 Sobic002G428200 Sobic002G428200 Sobic003G104700--Sobic002G428200 Sobic006G252200 Sobic006G252200 Sobic003G104700--Sobic006G252200 Sobic007G076300 Sobic007G076300 Sobic003G104700--Sobic007G076300 Sobic003G104700--Sobic002G078400 Sobic003G367451 Sobic003G367451 Sobic003G104700--Sobic003G367451 Sobic007G091000 Sobic007G091000 Sobic003G104700--Sobic007G091000 Sobic001G236300 Sobic001G236300 Sobic003G104700--Sobic001G236300 Sobic004G224900 Sobic004G224900 Sobic003G104700--Sobic004G224900 Sobic004G335000 Sobic004G335000 Sobic003G104700--Sobic004G335000 Sobic005G176000 Sobic005G176000 Sobic002G296300--Sobic005G176000 Sobic008G097401 Sobic008G097401 Sobic002G296300--Sobic008G097401 Sobic010G204300 Sobic010G204300 Sobic002G296300--Sobic010G204300 Sobic007G186300 Sobic007G186300 Sobic002G296300--Sobic007G186300 Sobic003G220600 Sobic003G220600 Sobic002G296300--Sobic003G220600 Sobic003G115800 Sobic003G115800 Sobic002G296300--Sobic003G115800 Sobic003G332401 Sobic003G332401 Sobic002G296300--Sobic003G332401 Sobic001G403700 Sobic001G403700 Sobic002G296300--Sobic001G403700 Sobic003G007500 Sobic003G007500 Sobic002G296300--Sobic003G007500 Sobic004G265700 Sobic004G265700 Sobic001G041100--Sobic004G265700 Sobic001G041100--Sobic006G141500 Sobic001G041100--Sobic010G163600 Sobic001G041100--Sobic003G362400 Sobic001G066700 Sobic001G066700 Sobic001G041100--Sobic001G066700 Sobic001G041100--Sobic010G213400 Sobic001G041100--Sobic006G010600 Sobic009G191600 Sobic009G191600 Sobic001G041100--Sobic009G191600 Sobic007G203700 Sobic007G203700 Sobic001G041100--Sobic007G203700 Sobic006G139700--Sobic006G010600 Sobic005G111100 Sobic005G111100 Sobic006G139700--Sobic005G111100 Sobic001G018500 Sobic001G018500 Sobic006G139700--Sobic001G018500 Sobic010G180700 Sobic010G180700 Sobic006G139700--Sobic010G180700 Sobic003G150000 Sobic003G150000 Sobic006G139700--Sobic003G150000 Sobic007G186800 Sobic007G186800 Sobic006G139700--Sobic007G186800 Sobic003G368500 Sobic003G368500 Sobic006G139700--Sobic003G368500 Sobic002G222900 Sobic002G222900 Sobic006G139700--Sobic002G222900 Sobic007G134000 Sobic007G134000 Sobic006G139700--Sobic007G134000 Sobic004G103700 Sobic004G103700 Sobic006G010600--Sobic004G103700 Sobic006G010600--Sobic001G445800 Sobic004G145801 Sobic004G145801 Sobic006G010600--Sobic004G145801 Sobic001G172000 Sobic001G172000 Sobic006G010600--Sobic001G172000 Sobic010G204600 Sobic010G204600 Sobic006G010600--Sobic010G204600 Sobic006G010600--Sobic003G368500 Sobic003G181500 Sobic003G181500 Sobic006G010600--Sobic003G181500 Sobic006G010600--Sobic002G078400 Sobic004G310300 Sobic004G310300 Sobic006G010600--Sobic004G310300 Sobic003G362400--Sobic002G078400 Sobic004G107600 Sobic004G107600 Sobic003G362400--Sobic004G107600 Sobic001G529000 Sobic001G529000 Sobic003G362400--Sobic001G529000 Sobic003G362400--Sobic007G091000 Sobic003G362400--Sobic005G111100 Sobic002G116200 Sobic002G116200 Sobic003G362400--Sobic002G116200 Sobic001G331900 Sobic001G331900 Sobic003G362400--Sobic001G331900 Sobic003G362400--Sobic010G213400 Sobic009G232000 Sobic009G232000 Sobic003G362400--Sobic009G232000 Sobic002G196350--Sobic010G213400 Sobic006G062800 Sobic006G062800 Sobic002G196350--Sobic006G062800 Sobic004G026200 Sobic004G026200 Sobic002G196350--Sobic004G026200 Sobic003G063200 Sobic003G063200 Sobic002G196350--Sobic003G063200 Sobic005G028700 Sobic005G028700 Sobic002G196350--Sobic005G028700 Sobic008G185400 Sobic008G185400 Sobic002G196350--Sobic008G185400 Sobic009G129000 Sobic009G129000 Sobic002G196350--Sobic009G129000 Sobic002G196350--Sobic002G046100 Sobic009G033700 Sobic009G033700 Sobic002G196350--Sobic009G033700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.