Gene annotation
Transcriptome id Sobic.003G025100.1
Synonym PSF2, Sb03g002410
Functional annotation PSF2 - Putative GINS complex subunit, expressed
UniProt C5XL70
Pfam PF05916
Panther DB PTHR12772
NCBI CDD KOG4071; Uncharacterized conserved protein
KEGG Orthology K10733; GINS2, GINS complex subunit 2
Gene Ontology GO:0006260; DNA replication GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G12530 : PSF2
RAP-DB (Rice) LOC_Os01g14610.1 : PSF2 - Putative GINS complex subunit, expressed
MaizeGDB (Corn) Zm00025a049269
Brachypodium KQK11778
Barley HORVU1Hr1G084860.5 , HORVU1Hr1G084860.4 , HORVU1Hr1G084860.7 , HORVU1Hr1G084860.6 , HORVU1Hr1G084860.1 , HORVU1Hr1G084860.3 , HORVU1Hr1G084860.2
Wheat TraesCS1B02G411000 , TraesCS1D02G392400
Populus -


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cDNA sequences
Sobic.003G025100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G246900 expressed protein -
2 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
3 Sobic.001G192700 major facilitator superfamily domain-containing protein 5, putative, expressed -
4 Sobic.003G008700 MYB family transcription factor, putative, expressed -
5 Sobic.004G032900 wee1-like protein kinase, putative, expressed K06632: wee1-like protein kinase
6 Sobic.001G521100 POLD2 - Putative DNA polymerase delta complex subunit, expressed K02328: DNA polymerase delta subunit 2
7 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
8 Sobic.002G426800 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.009G131200 expressed protein -
10 Sobic.002G236700 TMV-MP30 binding protein 2C, putative, expressed -
11 Sobic.006G236800 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
12 Sobic.003G364900 hemerythrin family protein, expressed -
13 Sobic.010G051100 OsPDIL1-5 protein disulfide isomerase PDIL1-5, expressed K09580: PDIA1, protein disulfide-isomerase A1
14 Sobic.006G119300 ribonuclease H2 subunit B, putative, expressed K10744: ribonuclease H2 subunit B
15 Sobic.002G315400 expressed protein -
16 Sobic.004G063600 CYPRO4, putative, expressed -
17 Sobic.002G113400 dnaJ domain containing protein, expressed -
18 Sobic.006G102900 expressed protein -
19 Sobic.009G181500 Up-reguralion under heat(PubMedID : 24916767)@cyclin, putative, expressed -
20 Sobic.003G107200 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5


Gene co-expression network
sample Sobic003G025100 Sobic003G025100 Sobic002G246900 Sobic002G246900 Sobic003G025100--Sobic002G246900 Sobic004G047100 Sobic004G047100 Sobic003G025100--Sobic004G047100 Sobic001G192700 Sobic001G192700 Sobic003G025100--Sobic001G192700 Sobic003G008700 Sobic003G008700 Sobic003G025100--Sobic003G008700 Sobic004G032900 Sobic004G032900 Sobic003G025100--Sobic004G032900 Sobic001G521100 Sobic001G521100 Sobic003G025100--Sobic001G521100 Sobic009G189200 Sobic009G189200 Sobic003G025100--Sobic009G189200 Sobic002G426800 Sobic002G426800 Sobic003G025100--Sobic002G426800 Sobic009G131200 Sobic009G131200 Sobic003G025100--Sobic009G131200 Sobic002G246900--Sobic004G047100 Sobic010G105400 Sobic010G105400 Sobic002G246900--Sobic010G105400 Sobic010G191000 Sobic010G191000 Sobic002G246900--Sobic010G191000 Sobic003G107200 Sobic003G107200 Sobic002G246900--Sobic003G107200 Sobic001G238900 Sobic001G238900 Sobic002G246900--Sobic001G238900 Sobic009G181500 Sobic009G181500 Sobic002G246900--Sobic009G181500 Sobic002G236700 Sobic002G236700 Sobic002G246900--Sobic002G236700 Sobic001G169800 Sobic001G169800 Sobic002G246900--Sobic001G169800 Sobic002G230800 Sobic002G230800 Sobic002G246900--Sobic002G230800 Sobic004G047100--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic004G047100--Sobic005G144600 Sobic004G047100--Sobic009G181500 Sobic004G047100--Sobic002G246900 Sobic004G047100--Sobic002G426800 Sobic003G179500 Sobic003G179500 Sobic004G047100--Sobic003G179500 Sobic001G091500 Sobic001G091500 Sobic004G047100--Sobic001G091500 Sobic006G116500 Sobic006G116500 Sobic004G047100--Sobic006G116500 Sobic003G387700 Sobic003G387700 Sobic004G047100--Sobic003G387700 Sobic001G219800 Sobic001G219800 Sobic001G192700--Sobic001G219800 Sobic003G016300 Sobic003G016300 Sobic001G192700--Sobic003G016300 Sobic001G352800 Sobic001G352800 Sobic001G192700--Sobic001G352800 Sobic002G232400 Sobic002G232400 Sobic001G192700--Sobic002G232400 Sobic001G135200 Sobic001G135200 Sobic001G192700--Sobic001G135200 Sobic001G348000 Sobic001G348000 Sobic001G192700--Sobic001G348000 Sobic004G117400 Sobic004G117400 Sobic001G192700--Sobic004G117400 Sobic001G091701 Sobic001G091701 Sobic001G192700--Sobic001G091701 Sobic002G387800 Sobic002G387800 Sobic001G192700--Sobic002G387800 Sobic001G170800 Sobic001G170800 Sobic003G008700--Sobic001G170800 Sobic003G008700--Sobic004G047100 Sobic009G184200 Sobic009G184200 Sobic003G008700--Sobic009G184200 Sobic005G000500 Sobic005G000500 Sobic003G008700--Sobic005G000500 Sobic005G110535 Sobic005G110535 Sobic003G008700--Sobic005G110535 Sobic003G008700--Sobic010G105400 Sobic008G148000 Sobic008G148000 Sobic003G008700--Sobic008G148000 Sobic003G444100 Sobic003G444100 Sobic003G008700--Sobic003G444100 Sobic001G398400 Sobic001G398400 Sobic003G008700--Sobic001G398400 Sobic007G112100 Sobic007G112100 Sobic004G032900--Sobic007G112100 Sobic007G125300 Sobic007G125300 Sobic004G032900--Sobic007G125300 Sobic006G119300 Sobic006G119300 Sobic004G032900--Sobic006G119300 Sobic004G032900--Sobic002G236700 Sobic009G109300 Sobic009G109300 Sobic004G032900--Sobic009G109300 Sobic004G032900--Sobic002G246900 Sobic010G051100 Sobic010G051100 Sobic004G032900--Sobic010G051100 Sobic006G120600 Sobic006G120600 Sobic004G032900--Sobic006G120600 Sobic010G103700 Sobic010G103700 Sobic004G032900--Sobic010G103700 Sobic002G113400 Sobic002G113400 Sobic001G521100--Sobic002G113400 Sobic001G521100--Sobic002G246900 Sobic002G351100 Sobic002G351100 Sobic001G521100--Sobic002G351100 Sobic002G315400 Sobic002G315400 Sobic001G521100--Sobic002G315400 Sobic001G025900 Sobic001G025900 Sobic001G521100--Sobic001G025900 Sobic001G521100--Sobic006G119300 Sobic006G236800 Sobic006G236800 Sobic001G521100--Sobic006G236800 Sobic003G442300 Sobic003G442300 Sobic001G521100--Sobic003G442300 Sobic003G297200 Sobic003G297200 Sobic001G521100--Sobic003G297200 Sobic006G102900 Sobic006G102900 Sobic009G189200--Sobic006G102900 Sobic001G261549 Sobic001G261549 Sobic009G189200--Sobic001G261549 Sobic002G057500 Sobic002G057500 Sobic009G189200--Sobic002G057500 Sobic010G144900 Sobic010G144900 Sobic009G189200--Sobic010G144900 Sobic007G044400 Sobic007G044400 Sobic009G189200--Sobic007G044400 Sobic004G285900 Sobic004G285900 Sobic009G189200--Sobic004G285900 Sobic003G084300 Sobic003G084300 Sobic009G189200--Sobic003G084300 Sobic003G122200 Sobic003G122200 Sobic009G189200--Sobic003G122200 Sobic001G131600 Sobic001G131600 Sobic009G189200--Sobic001G131600 Sobic002G426800--Sobic009G181500 Sobic002G426800--Sobic001G091500 Sobic002G426800--Sobic005G144600 Sobic002G426800--Sobic004G047100 Sobic003G260700 Sobic003G260700 Sobic002G426800--Sobic003G260700 Sobic001G078600 Sobic001G078600 Sobic002G426800--Sobic001G078600 Sobic003G314900 Sobic003G314900 Sobic002G426800--Sobic003G314900 Sobic002G426800--Sobic003G444100 Sobic002G426800--Sobic010G105400 Sobic009G125800 Sobic009G125800 Sobic009G131200--Sobic009G125800 Sobic008G004900 Sobic008G004900 Sobic009G131200--Sobic008G004900 Sobic001G082800 Sobic001G082800 Sobic009G131200--Sobic001G082800 Sobic009G136000 Sobic009G136000 Sobic009G131200--Sobic009G136000 Sobic004G063600 Sobic004G063600 Sobic009G131200--Sobic004G063600 Sobic009G131200--Sobic004G117400 Sobic009G058100 Sobic009G058100 Sobic009G131200--Sobic009G058100 Sobic001G069700 Sobic001G069700 Sobic009G131200--Sobic001G069700 Sobic010G009700 Sobic010G009700 Sobic009G131200--Sobic010G009700
Octagon: transcription factors


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