Gene annotation
Transcriptome id Sobic.003G078800.1
Synonym Sb03g006650
Functional annotation PB1 domain containing protein, expressed
UniProt C5XQP4
Pfam PF00564
Panther DB PTHR31066 PTHR31066:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G01190 : Octicosapeptide/Phox/Bem1p family protein
RAP-DB (Rice) LOC_Os01g04650.1 : PB1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051296 , Zm00025a035589 , Zm00025a030624 , Zm00025a024146 , Zm00025a024147 , Zm00025a024145 , Zm00025a023530 , Zm00025a001773
Brachypodium KQK02598 , KQK02599
Barley HORVU3Hr1G008310.1 , HORVU3Hr1G008420.7 , HORVU3Hr1G008420.6 , HORVU3Hr1G008420.5 , HORVU3Hr1G008420.4 , HORVU3Hr1G008420.1
Wheat TraesCS3D02G050900 , TraesCS3A02G051800 , TraesCS3B02G060500
Populus -


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cDNA sequences
Sobic.003G078800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G294200 casein kinase II subunit beta-4, putative, expressed K03115: casein kinase II subunit beta
2 Sobic.002G122600 ankyrin repeat domain containing protein, expressed -
3 Sobic.001G372000 OsFBT5 - F-box and tubby domain containing protein, expressed -
4 Sobic.006G228700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_CrRLK1L-1.3 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
5 Sobic.006G264500 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
6 Sobic.010G067700 expressed protein -
7 Sobic.001G004700 expressed protein -
8 Sobic.009G157200 OsFBL23 - F-box domain and LRR containing protein, expressed K13463: coronatine-insensitive protein 1
9 Sobic.006G047100 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
10 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
11 Sobic.006G252300 BSD domain-containing protein, putative, expressed -
12 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
13 Sobic.006G119800 leucine rich repeat containing protein, expressed -
14 Sobic.001G420700 clathrin assembly protein, putative, expressed -
15 Sobic.001G057200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
16 Sobic.001G129300 ribosomal L18p/L5e family protein, putative, expressed -
17 Sobic.006G194500 expressed protein -
18 Sobic.003G309900 OsFBX26 - F-box domain containing protein, expressed -
19 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
20 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W


Gene co-expression network
sample Sobic003G078800 Sobic003G078800 Sobic001G294200 Sobic001G294200 Sobic003G078800--Sobic001G294200 Sobic002G122600 Sobic002G122600 Sobic003G078800--Sobic002G122600 Sobic001G372000 Sobic001G372000 Sobic003G078800--Sobic001G372000 Sobic006G228700 Sobic006G228700 Sobic003G078800--Sobic006G228700 Sobic006G264500 Sobic006G264500 Sobic003G078800--Sobic006G264500 Sobic010G067700 Sobic010G067700 Sobic003G078800--Sobic010G067700 Sobic001G004700 Sobic001G004700 Sobic003G078800--Sobic001G004700 Sobic009G157200 Sobic009G157200 Sobic003G078800--Sobic009G157200 Sobic006G047100 Sobic006G047100 Sobic003G078800--Sobic006G047100 Sobic001G294200--Sobic003G078800 Sobic001G543300 Sobic001G543300 Sobic001G294200--Sobic001G543300 Sobic006G262900 Sobic006G262900 Sobic001G294200--Sobic006G262900 Sobic001G512600 Sobic001G512600 Sobic001G294200--Sobic001G512600 Sobic009G133400 Sobic009G133400 Sobic001G294200--Sobic009G133400 Sobic002G129000 Sobic002G129000 Sobic001G294200--Sobic002G129000 Sobic001G365800 Sobic001G365800 Sobic001G294200--Sobic001G365800 Sobic004G301900 Sobic004G301900 Sobic001G294200--Sobic004G301900 Sobic001G078800 Sobic001G078800 Sobic001G294200--Sobic001G078800 Sobic001G281600 Sobic001G281600 Sobic002G122600--Sobic001G281600 Sobic009G215800 Sobic009G215800 Sobic002G122600--Sobic009G215800 Sobic010G268300 Sobic010G268300 Sobic002G122600--Sobic010G268300 Sobic002G309800 Sobic002G309800 Sobic002G122600--Sobic002G309800 Sobic004G083700 Sobic004G083700 Sobic002G122600--Sobic004G083700 Sobic001G429300 Sobic001G429300 Sobic002G122600--Sobic001G429300 Sobic002G122600--Sobic003G078800 Sobic003G196900 Sobic003G196900 Sobic002G122600--Sobic003G196900 Sobic009G017400 Sobic009G017400 Sobic002G122600--Sobic009G017400 Sobic001G467000 Sobic001G467000 Sobic001G372000--Sobic001G467000 Sobic004G150400 Sobic004G150400 Sobic001G372000--Sobic004G150400 Sobic010G145900 Sobic010G145900 Sobic001G372000--Sobic010G145900 Sobic006G209500 Sobic006G209500 Sobic001G372000--Sobic006G209500 Sobic001G372000--Sobic001G512600 Sobic002G132300 Sobic002G132300 Sobic001G372000--Sobic002G132300 Sobic001G291100 Sobic001G291100 Sobic001G372000--Sobic001G291100 Sobic001G478300 Sobic001G478300 Sobic001G372000--Sobic001G478300 Sobic003G305400 Sobic003G305400 Sobic001G372000--Sobic003G305400 Sobic006G228700--Sobic003G078800 Sobic001G087100 Sobic001G087100 Sobic006G228700--Sobic001G087100 Sobic006G228700--Sobic001G372000 Sobic001G123000 Sobic001G123000 Sobic006G228700--Sobic001G123000 Sobic001G384900 Sobic001G384900 Sobic006G228700--Sobic001G384900 Sobic003G142700 Sobic003G142700 Sobic006G228700--Sobic003G142700 Sobic007G168200 Sobic007G168200 Sobic006G228700--Sobic007G168200 Sobic001G423100 Sobic001G423100 Sobic006G228700--Sobic001G423100 Sobic006G228700--Sobic002G122600 Sobic006G215300 Sobic006G215300 Sobic006G264500--Sobic006G215300 Sobic006G264500--Sobic001G281600 Sobic002G376300 Sobic002G376300 Sobic006G264500--Sobic002G376300 Sobic006G264500--Sobic003G078800 Sobic001G464100 Sobic001G464100 Sobic006G264500--Sobic001G464100 Sobic006G264500--Sobic001G372000 Sobic001G057200 Sobic001G057200 Sobic006G264500--Sobic001G057200 Sobic006G264500--Sobic001G294200 Sobic002G268400 Sobic002G268400 Sobic006G264500--Sobic002G268400 Sobic008G128600 Sobic008G128600 Sobic010G067700--Sobic008G128600 Sobic009G054700 Sobic009G054700 Sobic010G067700--Sobic009G054700 Sobic001G136900 Sobic001G136900 Sobic010G067700--Sobic001G136900 Sobic010G071200 Sobic010G071200 Sobic010G067700--Sobic010G071200 Sobic002G256300 Sobic002G256300 Sobic010G067700--Sobic002G256300 Sobic001G512900 Sobic001G512900 Sobic010G067700--Sobic001G512900 Sobic010G168600 Sobic010G168600 Sobic010G067700--Sobic010G168600 Sobic001G083600 Sobic001G083600 Sobic010G067700--Sobic001G083600 Sobic003G146900 Sobic003G146900 Sobic010G067700--Sobic003G146900 Sobic001G004700--Sobic002G122600 Sobic001G004700--Sobic003G078800 Sobic004G227300 Sobic004G227300 Sobic001G004700--Sobic004G227300 Sobic006G171700 Sobic006G171700 Sobic001G004700--Sobic006G171700 Sobic001G380500 Sobic001G380500 Sobic001G004700--Sobic001G380500 Sobic003G299000 Sobic003G299000 Sobic001G004700--Sobic003G299000 Sobic006G119800 Sobic006G119800 Sobic001G004700--Sobic006G119800 Sobic006G004600 Sobic006G004600 Sobic001G004700--Sobic006G004600 Sobic007G171950 Sobic007G171950 Sobic001G004700--Sobic007G171950 Sobic009G157200--Sobic001G291100 Sobic010G056200 Sobic010G056200 Sobic009G157200--Sobic010G056200 Sobic003G084700 Sobic003G084700 Sobic009G157200--Sobic003G084700 Sobic009G157200--Sobic001G281600 Sobic003G018900 Sobic003G018900 Sobic009G157200--Sobic003G018900 Sobic003G250500 Sobic003G250500 Sobic009G157200--Sobic003G250500 Sobic006G273200 Sobic006G273200 Sobic009G157200--Sobic006G273200 Sobic007G078500 Sobic007G078500 Sobic009G157200--Sobic007G078500 Sobic004G205600 Sobic004G205600 Sobic009G157200--Sobic004G205600 Sobic005G084100 Sobic005G084100 Sobic006G047100--Sobic005G084100 Sobic006G056000 Sobic006G056000 Sobic006G047100--Sobic006G056000 Sobic010G249300 Sobic010G249300 Sobic006G047100--Sobic010G249300 Sobic002G192500 Sobic002G192500 Sobic006G047100--Sobic002G192500 Sobic009G112400 Sobic009G112400 Sobic006G047100--Sobic009G112400 Sobic004G232000 Sobic004G232000 Sobic006G047100--Sobic004G232000 Sobic002G131300 Sobic002G131300 Sobic006G047100--Sobic002G131300 Sobic002G076000 Sobic002G076000 Sobic006G047100--Sobic002G076000 Sobic006G047100--Sobic001G057200
Octagon: transcription factors


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