Gene annotation
Transcriptome id Sobic.003G085600.1
Synonym ethylene response factor 35, SbERF35, CRF2, Sb03g007200, TMO3
Functional annotation Not investigated (PubMedID : 23766026)
AP2 domain containing protein, expressed
UniProt C5XQV4
Pfam PF00847
Panther DB PTHR31190:SF22 PTHR31190
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003700; DNA-binding transcription factor activity GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT1G68550 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os01g04020.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a037299 , Zm00025a052430 , Zm00025a023615 , Zm00025a033098 , Zm00025a024332 , Zm00025a035559
Brachypodium KQK23284 , KQK02535
Barley HORVU2Hr1G018830.1 , HORVU2Hr1G018830.2 , HORVU7Hr1G055290.34 , HORVU7Hr1G055290.33 , HORVU7Hr1G055290.30 , HORVU7Hr1G055290.31 , HORVU3Hr1G003400.1 , HORVU4Hr1G077310.1 , HORVU4Hr1G077310.2 , HORVU4Hr1G077310.3 , HORVU4Hr1G077310.4 , HORVU4Hr1G077310.7 , HORVU4Hr1G077310.8 , HORVU4Hr1G077310.5 , HORVU1Hr1G082310.1
Wheat TraesCS2B02G127800 , TraesCS4B02G299500 , TraesCS4B02G299400 , TraesCS7B02G162100 , TraesCS5A02G314600 , TraesCS2A02G109800 , TraesCS3B02G042400 , TraesCS7D02G265000 , TraesCS7A02G264100 , TraesCS4D02G298400
Populus -


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cDNA sequences
Sobic.003G085600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G197400 pentatricopeptide, putative, expressed -
2 Sobic.003G442000 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
3 Sobic.002G330900 OsFBX462 - F-box domain containing protein, expressed -
4 Sobic.010G235600 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
5 Sobic.002G408600 expressed protein -
6 Sobic.002G095900 - -
7 Sobic.004G089500 - -
8 Sobic.004G077000 expressed protein -
9 Sobic.003G343600 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.010G209700 expressed protein -
11 Sobic.004G227100 survival motor neuron containing protein, expressed K13130: GEMIN2, gem associated protein 2
12 Sobic.010G000700 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
13 Sobic.001G222900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
14 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
15 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
16 Sobic.003G142700 expressed protein -
17 Sobic.002G262700 RNA recognition motif containing protein, putative, expressed K13155: U11/U12 small nuclear ribonucleoprotein 35 kDa protein
18 Sobic.005G064700 expressed protein -
19 Sobic.006G263000 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
20 Sobic.001G425000 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit


Gene co-expression network
sample Sobic003G085600 Sobic003G085600 Sobic007G197400 Sobic007G197400 Sobic003G085600--Sobic007G197400 Sobic003G442000 Sobic003G442000 Sobic003G085600--Sobic003G442000 Sobic002G330900 Sobic002G330900 Sobic003G085600--Sobic002G330900 Sobic010G235600 Sobic010G235600 Sobic003G085600--Sobic010G235600 Sobic002G408600 Sobic002G408600 Sobic003G085600--Sobic002G408600 Sobic002G095900 Sobic002G095900 Sobic003G085600--Sobic002G095900 Sobic004G089500 Sobic004G089500 Sobic003G085600--Sobic004G089500 Sobic004G077000 Sobic004G077000 Sobic003G085600--Sobic004G077000 Sobic003G343600 Sobic003G343600 Sobic003G085600--Sobic003G343600 Sobic007G197400--Sobic003G085600 Sobic008G056900 Sobic008G056900 Sobic007G197400--Sobic008G056900 Sobic007G197400--Sobic002G408600 Sobic001G485600 Sobic001G485600 Sobic007G197400--Sobic001G485600 Sobic008G098600 Sobic008G098600 Sobic007G197400--Sobic008G098600 Sobic006G180700 Sobic006G180700 Sobic007G197400--Sobic006G180700 Sobic010G278600 Sobic010G278600 Sobic007G197400--Sobic010G278600 Sobic009G093400 Sobic009G093400 Sobic007G197400--Sobic009G093400 Sobic007G197400--Sobic004G089500 Sobic005G009200 Sobic005G009200 Sobic003G442000--Sobic005G009200 Sobic005G015900 Sobic005G015900 Sobic003G442000--Sobic005G015900 Sobic004G018300 Sobic004G018300 Sobic003G442000--Sobic004G018300 Sobic003G258900 Sobic003G258900 Sobic003G442000--Sobic003G258900 Sobic010G202600 Sobic010G202600 Sobic003G442000--Sobic010G202600 Sobic009G074700 Sobic009G074700 Sobic003G442000--Sobic009G074700 Sobic002G197100 Sobic002G197100 Sobic003G442000--Sobic002G197100 Sobic002G158700 Sobic002G158700 Sobic003G442000--Sobic002G158700 Sobic001G090400 Sobic001G090400 Sobic003G442000--Sobic001G090400 Sobic002G330900--Sobic010G235600 Sobic001G215400 Sobic001G215400 Sobic002G330900--Sobic001G215400 Sobic002G330900--Sobic003G085600 Sobic009G126800 Sobic009G126800 Sobic002G330900--Sobic009G126800 Sobic009G137900 Sobic009G137900 Sobic002G330900--Sobic009G137900 Sobic004G148750 Sobic004G148750 Sobic002G330900--Sobic004G148750 Sobic003G051700 Sobic003G051700 Sobic002G330900--Sobic003G051700 Sobic002G330900--Sobic004G089500 Sobic002G330900--Sobic003G343600 Sobic010G235600--Sobic001G215400 Sobic001G425000 Sobic001G425000 Sobic010G235600--Sobic001G425000 Sobic009G017200 Sobic009G017200 Sobic010G235600--Sobic009G017200 Sobic003G417900 Sobic003G417900 Sobic010G235600--Sobic003G417900 Sobic007G026000 Sobic007G026000 Sobic010G235600--Sobic007G026000 Sobic008G058800 Sobic008G058800 Sobic010G235600--Sobic008G058800 Sobic003G205501 Sobic003G205501 Sobic010G235600--Sobic003G205501 Sobic010G235600--Sobic010G202600 Sobic006G130200 Sobic006G130200 Sobic010G235600--Sobic006G130200 Sobic002G408600--Sobic010G278600 Sobic002G408600--Sobic009G074700 Sobic001G334100 Sobic001G334100 Sobic002G408600--Sobic001G334100 Sobic005G199200 Sobic005G199200 Sobic002G408600--Sobic005G199200 Sobic002G408600--Sobic009G126800 Sobic002G262700 Sobic002G262700 Sobic002G408600--Sobic002G262700 Sobic001G335500 Sobic001G335500 Sobic002G408600--Sobic001G335500 Sobic003G184400 Sobic003G184400 Sobic002G408600--Sobic003G184400 Sobic004G067400 Sobic004G067400 Sobic002G408600--Sobic004G067400 Sobic003G159450 Sobic003G159450 Sobic002G095900--Sobic003G159450 Sobic008G125600 Sobic008G125600 Sobic002G095900--Sobic008G125600 Sobic009G197200 Sobic009G197200 Sobic002G095900--Sobic009G197200 Sobic001G225500 Sobic001G225500 Sobic002G095900--Sobic001G225500 Sobic010G143200 Sobic010G143200 Sobic002G095900--Sobic010G143200 Sobic003G061000 Sobic003G061000 Sobic002G095900--Sobic003G061000 Sobic007G179750 Sobic007G179750 Sobic002G095900--Sobic007G179750 Sobic009G067501 Sobic009G067501 Sobic002G095900--Sobic009G067501 Sobic001G191200 Sobic001G191200 Sobic002G095900--Sobic001G191200 Sobic004G089450 Sobic004G089450 Sobic004G089500--Sobic004G089450 Sobic001G261537 Sobic001G261537 Sobic004G089500--Sobic001G261537 Sobic005G064700 Sobic005G064700 Sobic004G089500--Sobic005G064700 Sobic004G089500--Sobic007G197400 Sobic008G106600 Sobic008G106600 Sobic004G089500--Sobic008G106600 Sobic005G127300 Sobic005G127300 Sobic004G089500--Sobic005G127300 Sobic007G090701 Sobic007G090701 Sobic004G089500--Sobic007G090701 Sobic009G116400 Sobic009G116400 Sobic004G089500--Sobic009G116400 Sobic006G066000 Sobic006G066000 Sobic004G089500--Sobic006G066000 Sobic005G229000 Sobic005G229000 Sobic004G077000--Sobic005G229000 Sobic001G428400 Sobic001G428400 Sobic004G077000--Sobic001G428400 Sobic002G362300 Sobic002G362300 Sobic004G077000--Sobic002G362300 Sobic004G077000--Sobic003G442000 Sobic008G034600 Sobic008G034600 Sobic004G077000--Sobic008G034600 Sobic002G157200 Sobic002G157200 Sobic004G077000--Sobic002G157200 Sobic009G225200 Sobic009G225200 Sobic004G077000--Sobic009G225200 Sobic004G077000--Sobic005G009200 Sobic007G224900 Sobic007G224900 Sobic004G077000--Sobic007G224900 Sobic003G140900 Sobic003G140900 Sobic003G343600--Sobic003G140900 Sobic002G223300 Sobic002G223300 Sobic003G343600--Sobic002G223300 Sobic005G072400 Sobic005G072400 Sobic003G343600--Sobic005G072400 Sobic006G248500 Sobic006G248500 Sobic003G343600--Sobic006G248500 Sobic004G285000 Sobic004G285000 Sobic003G343600--Sobic004G285000 Sobic002G268900 Sobic002G268900 Sobic003G343600--Sobic002G268900 Sobic005G198200 Sobic005G198200 Sobic003G343600--Sobic005G198200 Sobic006G278200 Sobic006G278200 Sobic003G343600--Sobic006G278200 Sobic004G085300 Sobic004G085300 Sobic003G343600--Sobic004G085300
Octagon: transcription factors


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