Gene annotation
Transcriptome id Sobic.003G109250.1
Synonym -
Functional annotation -
UniProt A0A1W0VWU1
Pfam PF00177
Panther DB PTHR11205 PTHR11205:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006412; translation


Orthologs (automatic annotation)
TAIR ATCG00900 : Ribosomal protein S7p/S5e family protein
RAP-DB (Rice) LOC_Os04g16798.1 : chloroplast 30S ribosomal protein S7, putative, expressed
MaizeGDB (Corn) Zm00025a057602 , Zm00025a057601 , Zm00025a010031 , Zm00025a057567 , Zm00025a057572 , Zm00025a057573 , Zm00025a009803 , Zm00025a058070 , Zm00025a010044 , Zm00025a010045 , Zm00025a010046 , Zm00025a001410 , Zm00025a054641 , Zm00025a038473 , Zm00025a057516
Brachypodium KQJ88318 , KQK18210 , KQK12735 , PNT63586 , PNT65083 , KQJ89171 , PNT67428
Barley HORVU0Hr1G034730.2 , HORVU0Hr1G034770.2 , HORVU5Hr1G064870.2 , HORVU0Hr1G034830.1 , AGP50799 , HORVU2Hr1G121660.2 , HORVU0Hr1G031420.1 , HORVU5Hr1G004530.2 , HORVU6Hr1G046780.1 , HORVU6Hr1G049520.2 , HORVU6Hr1G046780.2 , HORVU2Hr1G121420.2 , HORVU4Hr1G048750.1 , HORVU7Hr1G107890.2
Wheat TraesCS1B02G406600 , TraesCS4B02G238600 , TraesCS4A02G156100 , TraesCSU02G149800 , TraesCS4A02G024600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G064600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase
2 Sobic.004G265800 uridine kinase, putative, expressed -
3 Sobic.002G215800 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
4 Sobic.001G462500 natural resistance-associated macrophage protein, putative, expressed K12347: SLC11A1, natural resistance-associated macrophage protein 1
5 Sobic.009G133500 expressed protein -
6 Sobic.003G322700 expressed protein -
7 Sobic.007G004500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
8 Sobic.010G107000 phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
9 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
10 Sobic.006G125400 steroid nuclear receptor, ligand-binding, putative, expressed -
11 Sobic.001G517800 NIN, putative, expressed -
12 Sobic.003G320700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.004G068400 Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
14 Sobic.003G257100 YT521-B-like family domain containing protein, expressed -
15 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
16 Sobic.006G002000 phosphoglycerate mutase, putative, expressed -
17 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
18 Sobic.002G352800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lactose permease-related, putative, expressed -
19 Sobic.009G193700 transmembrane protein 56, putative, expressed -
20 Sobic.002G147600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1


Gene co-expression network
sample Sobic003G109250 Sobic003G109250 Sobic006G064600 Sobic006G064600 Sobic003G109250--Sobic006G064600 Sobic004G265800 Sobic004G265800 Sobic003G109250--Sobic004G265800 Sobic002G215800 Sobic002G215800 Sobic003G109250--Sobic002G215800 Sobic001G462500 Sobic001G462500 Sobic003G109250--Sobic001G462500 Sobic009G133500 Sobic009G133500 Sobic003G109250--Sobic009G133500 Sobic003G322700 Sobic003G322700 Sobic003G109250--Sobic003G322700 Sobic007G004500 Sobic007G004500 Sobic003G109250--Sobic007G004500 Sobic010G107000 Sobic010G107000 Sobic003G109250--Sobic010G107000 Sobic006G204900 Sobic006G204900 Sobic003G109250--Sobic006G204900 Sobic003G257100 Sobic003G257100 Sobic006G064600--Sobic003G257100 Sobic002G266000 Sobic002G266000 Sobic006G064600--Sobic002G266000 Sobic003G320700 Sobic003G320700 Sobic006G064600--Sobic003G320700 Sobic001G517800 Sobic001G517800 Sobic006G064600--Sobic001G517800 Sobic006G064600--Sobic003G322700 Sobic006G064600--Sobic001G462500 Sobic003G301900 Sobic003G301900 Sobic006G064600--Sobic003G301900 Sobic003G051600 Sobic003G051600 Sobic006G064600--Sobic003G051600 Sobic001G305500 Sobic001G305500 Sobic006G064600--Sobic001G305500 Sobic004G131040 Sobic004G131040 Sobic004G265800--Sobic004G131040 Sobic004G265800--Sobic001G462500 Sobic004G265800--Sobic007G004500 Sobic003G200100 Sobic003G200100 Sobic004G265800--Sobic003G200100 Sobic004G065000 Sobic004G065000 Sobic004G265800--Sobic004G065000 Sobic001G351800 Sobic001G351800 Sobic004G265800--Sobic001G351800 Sobic004G265800--Sobic003G322700 Sobic004G265800--Sobic006G204900 Sobic004G265800--Sobic002G266000 Sobic009G029600 Sobic009G029600 Sobic002G215800--Sobic009G029600 Sobic009G211400 Sobic009G211400 Sobic002G215800--Sobic009G211400 Sobic003G219600 Sobic003G219600 Sobic002G215800--Sobic003G219600 Sobic004G255000 Sobic004G255000 Sobic002G215800--Sobic004G255000 Sobic001G249300 Sobic001G249300 Sobic002G215800--Sobic001G249300 Sobic001G280200 Sobic001G280200 Sobic002G215800--Sobic001G280200 Sobic003G138200 Sobic003G138200 Sobic002G215800--Sobic003G138200 Sobic004G260000 Sobic004G260000 Sobic002G215800--Sobic004G260000 Sobic002G215800--Sobic010G107000 Sobic001G462500--Sobic002G266000 Sobic001G462500--Sobic006G204900 Sobic001G462500--Sobic003G322700 Sobic001G462500--Sobic004G265800 Sobic001G016700 Sobic001G016700 Sobic001G462500--Sobic001G016700 Sobic001G462500--Sobic007G004500 Sobic004G266400 Sobic004G266400 Sobic001G462500--Sobic004G266400 Sobic006G087700 Sobic006G087700 Sobic001G462500--Sobic006G087700 Sobic001G207400 Sobic001G207400 Sobic001G462500--Sobic001G207400 Sobic009G133500--Sobic004G065000 Sobic009G133500--Sobic006G204900 Sobic010G139600 Sobic010G139600 Sobic009G133500--Sobic010G139600 Sobic002G147600 Sobic002G147600 Sobic009G133500--Sobic002G147600 Sobic004G136300 Sobic004G136300 Sobic009G133500--Sobic004G136300 Sobic008G092600 Sobic008G092600 Sobic009G133500--Sobic008G092600 Sobic004G329400 Sobic004G329400 Sobic009G133500--Sobic004G329400 Sobic009G133500--Sobic007G004500 Sobic007G075400 Sobic007G075400 Sobic009G133500--Sobic007G075400 Sobic003G322700--Sobic002G266000 Sobic003G322700--Sobic006G204900 Sobic010G001500 Sobic010G001500 Sobic003G322700--Sobic010G001500 Sobic004G355000 Sobic004G355000 Sobic003G322700--Sobic004G355000 Sobic003G322700--Sobic001G207400 Sobic003G355600 Sobic003G355600 Sobic003G322700--Sobic003G355600 Sobic003G322700--Sobic006G087700 Sobic006G199000 Sobic006G199000 Sobic003G322700--Sobic006G199000 Sobic004G034600 Sobic004G034600 Sobic003G322700--Sobic004G034600 Sobic007G004500--Sobic002G266000 Sobic002G430000 Sobic002G430000 Sobic007G004500--Sobic002G430000 Sobic001G085300 Sobic001G085300 Sobic007G004500--Sobic001G085300 Sobic001G390800 Sobic001G390800 Sobic007G004500--Sobic001G390800 Sobic007G004500--Sobic001G016700 Sobic007G004500--Sobic003G322700 Sobic007G004500--Sobic010G139600 Sobic007G004500--Sobic004G065000 Sobic007G004500--Sobic009G133500 Sobic010G107000--Sobic009G211400 Sobic001G325200 Sobic001G325200 Sobic010G107000--Sobic001G325200 Sobic009G193700 Sobic009G193700 Sobic010G107000--Sobic009G193700 Sobic010G107000--Sobic003G355600 Sobic010G107000--Sobic003G219600 Sobic001G150200 Sobic001G150200 Sobic010G107000--Sobic001G150200 Sobic010G107000--Sobic009G029600 Sobic009G226300 Sobic009G226300 Sobic010G107000--Sobic009G226300 Sobic010G107000--Sobic003G138200 Sobic006G204900--Sobic003G322700 Sobic006G204900--Sobic001G207400 Sobic004G269200 Sobic004G269200 Sobic006G204900--Sobic004G269200 Sobic006G204900--Sobic009G133500 Sobic006G204900--Sobic010G001500 Sobic004G068400 Sobic004G068400 Sobic006G204900--Sobic004G068400 Sobic006G204900--Sobic004G355000 Sobic006G204900--Sobic003G320700 Sobic006G204900--Sobic002G430000
Octagon: transcription factors


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