Gene annotation
Transcriptome id Sobic.003G149100.1
Synonym AtLEA5, SAG21, Sb03g012940
Functional annotation Up-reguralion under heat (PubMedID : 24916767)
Up-reguralion under combine stress of drought and heat (PubMedID : 24916767)
late embryogenesis abundant protein, putative, expressed
UniProt C5XIV2
Pfam PF03242
Panther DB PTHR33509 PTHR33509:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006950; response to stress


Orthologs (automatic annotation)
TAIR AT4G02380 : senescence-associated gene 21
RAP-DB (Rice) LOC_Os01g21250.1 : late embryogenesis abundant protein, putative, expressed
MaizeGDB (Corn) Zm00025a024337
Brachypodium -
Barley -
Wheat TraesCS3A02G396100
Populus -


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cDNA sequences
Sobic.003G149100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G309300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ferredoxin--nitrite reductase, putative, expressed K00366: ferredoxin-nitrite reductase
2 Sobic.009G176800 DUF567 domain containing protein, putative, expressed -
3 Sobic.004G094200 elongation factor 1-gamma, putative, expressed K03233: elongation factor 1-gamma
4 Sobic.004G062000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
5 Sobic.002G323700 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
6 Sobic.004G337925 - -
7 Sobic.006G030800 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
8 Sobic.005G115600 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed K00033: PGD, gnd, 6-phosphogluconate dehydrogenase
9 Sobic.007G100425 - -
10 Sobic.003G063300 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
11 Sobic.001G185800 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
12 Sobic.001G302200 glycosyl transferase 8 domain containing protein, putative, expressed -
13 Sobic.001G364500 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
14 Sobic.001G451500 Cytosolic glutamine synthase1.4(PubMedID : 26317421)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@glutamine synthetase, catalytic domain containing protein, expressed K01915: glnA, glutamine synthetase
15 Sobic.007G190100 transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit
16 Sobic.001G021300 elongation factor, putative, expressed K03234: elongation factor 2
17 Sobic.001G219300 lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
18 Sobic.006G254100 GTP cyclohydrolase I 1, putative, expressed K01495: GCH1, GTP cyclohydrolase IA
19 Sobic.001G021400 elongation factor, putative, expressed K03234: elongation factor 2
20 Sobic.008G016200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CAMK_KIN1/SNF1/Nim1_like.37 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -


Gene co-expression network
sample Sobic003G149100 Sobic003G149100 Sobic004G309300 Sobic004G309300 Sobic003G149100--Sobic004G309300 Sobic009G176800 Sobic009G176800 Sobic003G149100--Sobic009G176800 Sobic004G094200 Sobic004G094200 Sobic003G149100--Sobic004G094200 Sobic004G062000 Sobic004G062000 Sobic003G149100--Sobic004G062000 Sobic002G323700 Sobic002G323700 Sobic003G149100--Sobic002G323700 Sobic004G337925 Sobic004G337925 Sobic003G149100--Sobic004G337925 Sobic006G030800 Sobic006G030800 Sobic003G149100--Sobic006G030800 Sobic005G115600 Sobic005G115600 Sobic003G149100--Sobic005G115600 Sobic007G100425 Sobic007G100425 Sobic003G149100--Sobic007G100425 Sobic006G249400 Sobic006G249400 Sobic004G309300--Sobic006G249400 Sobic004G312800 Sobic004G312800 Sobic004G309300--Sobic004G312800 Sobic003G229600 Sobic003G229600 Sobic004G309300--Sobic003G229600 Sobic001G295300 Sobic001G295300 Sobic004G309300--Sobic001G295300 Sobic003G008900 Sobic003G008900 Sobic004G309300--Sobic003G008900 Sobic004G028200 Sobic004G028200 Sobic004G309300--Sobic004G028200 Sobic003G022300 Sobic003G022300 Sobic004G309300--Sobic003G022300 Sobic009G210200 Sobic009G210200 Sobic004G309300--Sobic009G210200 Sobic001G134800 Sobic001G134800 Sobic004G309300--Sobic001G134800 Sobic004G059600 Sobic004G059600 Sobic009G176800--Sobic004G059600 Sobic003G134600 Sobic003G134600 Sobic009G176800--Sobic003G134600 Sobic009G176800--Sobic005G115600 Sobic004G323900 Sobic004G323900 Sobic009G176800--Sobic004G323900 Sobic004G106300 Sobic004G106300 Sobic009G176800--Sobic004G106300 Sobic006G271500 Sobic006G271500 Sobic009G176800--Sobic006G271500 Sobic004G238100 Sobic004G238100 Sobic009G176800--Sobic004G238100 Sobic009G003000 Sobic009G003000 Sobic009G176800--Sobic009G003000 Sobic001G142800 Sobic001G142800 Sobic009G176800--Sobic001G142800 Sobic010G103900 Sobic010G103900 Sobic004G094200--Sobic010G103900 Sobic001G021300 Sobic001G021300 Sobic004G094200--Sobic001G021300 Sobic001G468600 Sobic001G468600 Sobic004G094200--Sobic001G468600 Sobic004G216400 Sobic004G216400 Sobic004G094200--Sobic004G216400 Sobic003G063300 Sobic003G063300 Sobic004G094200--Sobic003G063300 Sobic001G219300 Sobic001G219300 Sobic004G094200--Sobic001G219300 Sobic007G071300 Sobic007G071300 Sobic004G094200--Sobic007G071300 Sobic004G094200--Sobic007G100425 Sobic002G332900 Sobic002G332900 Sobic004G094200--Sobic002G332900 Sobic010G050300 Sobic010G050300 Sobic004G062000--Sobic010G050300 Sobic004G152900 Sobic004G152900 Sobic004G062000--Sobic004G152900 Sobic005G053800 Sobic005G053800 Sobic004G062000--Sobic005G053800 Sobic007G094050 Sobic007G094050 Sobic004G062000--Sobic007G094050 Sobic004G062000--Sobic004G337925 Sobic006G259700 Sobic006G259700 Sobic004G062000--Sobic006G259700 Sobic004G062000--Sobic003G149100 Sobic004G062000--Sobic006G030800 Sobic002G422500 Sobic002G422500 Sobic004G062000--Sobic002G422500 Sobic010G226600 Sobic010G226600 Sobic002G323700--Sobic010G226600 Sobic001G439200 Sobic001G439200 Sobic002G323700--Sobic001G439200 Sobic003G266500 Sobic003G266500 Sobic002G323700--Sobic003G266500 Sobic002G214300 Sobic002G214300 Sobic002G323700--Sobic002G214300 Sobic007G058200 Sobic007G058200 Sobic002G323700--Sobic007G058200 Sobic006G026600 Sobic006G026600 Sobic002G323700--Sobic006G026600 Sobic008G104601 Sobic008G104601 Sobic002G323700--Sobic008G104601 Sobic001G302200 Sobic001G302200 Sobic002G323700--Sobic001G302200 Sobic004G073500 Sobic004G073500 Sobic002G323700--Sobic004G073500 Sobic007G136100 Sobic007G136100 Sobic004G337925--Sobic007G136100 Sobic003G261500 Sobic003G261500 Sobic004G337925--Sobic003G261500 Sobic006G254100 Sobic006G254100 Sobic004G337925--Sobic006G254100 Sobic010G193900 Sobic010G193900 Sobic004G337925--Sobic010G193900 Sobic001G397500 Sobic001G397500 Sobic004G337925--Sobic001G397500 Sobic002G262400 Sobic002G262400 Sobic004G337925--Sobic002G262400 Sobic003G055700 Sobic003G055700 Sobic004G337925--Sobic003G055700 Sobic008G046800 Sobic008G046800 Sobic004G337925--Sobic008G046800 Sobic006G176600 Sobic006G176600 Sobic004G337925--Sobic006G176600 Sobic006G030800--Sobic005G115600 Sobic010G213600 Sobic010G213600 Sobic006G030800--Sobic010G213600 Sobic005G100800 Sobic005G100800 Sobic006G030800--Sobic005G100800 Sobic009G058400 Sobic009G058400 Sobic006G030800--Sobic009G058400 Sobic003G020500 Sobic003G020500 Sobic006G030800--Sobic003G020500 Sobic004G008600 Sobic004G008600 Sobic006G030800--Sobic004G008600 Sobic005G134200 Sobic005G134200 Sobic006G030800--Sobic005G134200 Sobic001G218500 Sobic001G218500 Sobic006G030800--Sobic001G218500 Sobic009G060700 Sobic009G060700 Sobic006G030800--Sobic009G060700 Sobic005G115600--Sobic006G030800 Sobic009G017500 Sobic009G017500 Sobic005G115600--Sobic009G017500 Sobic003G279800 Sobic003G279800 Sobic005G115600--Sobic003G279800 Sobic002G383900 Sobic002G383900 Sobic005G115600--Sobic002G383900 Sobic003G157700 Sobic003G157700 Sobic005G115600--Sobic003G157700 Sobic002G083600 Sobic002G083600 Sobic005G115600--Sobic002G083600 Sobic006G256200 Sobic006G256200 Sobic005G115600--Sobic006G256200 Sobic003G258800 Sobic003G258800 Sobic005G115600--Sobic003G258800 Sobic003G105000 Sobic003G105000 Sobic005G115600--Sobic003G105000 Sobic004G216800 Sobic004G216800 Sobic007G100425--Sobic004G216800 Sobic004G224900 Sobic004G224900 Sobic007G100425--Sobic004G224900 Sobic008G132400 Sobic008G132400 Sobic007G100425--Sobic008G132400 Sobic001G074300 Sobic001G074300 Sobic007G100425--Sobic001G074300 Sobic001G048832 Sobic001G048832 Sobic007G100425--Sobic001G048832 Sobic001G005900 Sobic001G005900 Sobic007G100425--Sobic001G005900 Sobic004G138800 Sobic004G138800 Sobic007G100425--Sobic004G138800 Sobic007G100425--Sobic003G063300 Sobic002G364500 Sobic002G364500 Sobic007G100425--Sobic002G364500
Octagon: transcription factors


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