Gene annotation
Transcriptome id Sobic.008G016200.1
Synonym Sb08g001430, CIPK3, SnRK3.17
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
CAMK_KIN1/SNF1/Nim1_like.37 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt C5YQL7
Pfam PF03822 PF07714
Panther DB PTHR24343 PTHR24343:SF189
NCBI CDD KOG0583; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0007165; signal transduction GO:0006468protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT2G26980 : CBL-interacting protein kinase 3
RAP-DB (Rice) LOC_Os12g03810.2 : CAMK_KIN1/SNF1/Nim1_like.37 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a033384 , Zm00025a028958
Brachypodium KQJ89558 , KQJ89506
Barley HORVU4Hr1G026300.20 , HORVU4Hr1G026300.21 , HORVU4Hr1G026300.11 , HORVU4Hr1G026300.10 , HORVU4Hr1G026300.13 , HORVU4Hr1G026300.12 , HORVU4Hr1G026300.15 , HORVU4Hr1G026300.14 , HORVU4Hr1G026300.17 , HORVU4Hr1G026300.16 , HORVU4Hr1G026300.19 , HORVU4Hr1G026300.18 , HORVU4Hr1G026300.5 , HORVU4Hr1G026300.4 , HORVU4Hr1G026300.7 , HORVU4Hr1G026300.6 , HORVU4Hr1G026300.1 , HORVU4Hr1G026300.3 , HORVU4Hr1G026300.2 , HORVU4Hr1G026300.9 , HORVU4Hr1G026300.8
Wheat TraesCS4B02G131000 , TraesCS4A02G187300 , TraesCS4D02G126200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G096300 deoxyhypusine synthase, putative, expressed K00809: DHPS, deoxyhypusine synthase
2 Sobic.003G062800 OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
3 Sobic.006G255000 TLD family protein, putative, expressed -
4 Sobic.006G016900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 27964718)@cysteine synthase, chloroplast/chromoplast precursor, putative, expressed K13034: L-3-cyanoalanine synthase/ cysteine synthase
5 Sobic.003G193700 carbamoyl-phosphate synthase large chain, putative, expressed K01955: carB, carbamoyl-phosphate synthase large subunit
6 Sobic.004G030100 glycosyltransferase, putative, expressed -
7 Sobic.007G140400 CAF1 family ribonuclease containing protein, putative, expressed K01148: PARN, poly(A)-specific ribonuclease
8 Sobic.010G017300 NBS-LRR disease resistance protein, putative, expressed K13457: RPM1, disease resistance protein RPM1
9 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
10 Sobic.004G185600 expressed protein -
11 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase
12 Sobic.007G095500 expressed protein -
13 Sobic.004G291400 rho guanine nucleotide exchange factor, putative, expressed -
14 Sobic.001G048200 elongation factor P, putative, expressed -
15 Sobic.010G249300 Ser/Thr protein phosphatase family protein, putative, expressed -
16 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
17 Sobic.005G004300 MRH1, putative, expressed -
18 Sobic.003G267000 1-aminocyclopropane-1-carboxylate deaminase, putative, expressed -
19 Sobic.009G238850 - -
20 Sobic.008G004400 GIL1, putative, expressed -


Gene co-expression network
sample Sobic008G016200 Sobic008G016200 Sobic001G096300 Sobic001G096300 Sobic008G016200--Sobic001G096300 Sobic003G062800 Sobic003G062800 Sobic008G016200--Sobic003G062800 Sobic006G255000 Sobic006G255000 Sobic008G016200--Sobic006G255000 Sobic006G016900 Sobic006G016900 Sobic008G016200--Sobic006G016900 Sobic003G193700 Sobic003G193700 Sobic008G016200--Sobic003G193700 Sobic004G030100 Sobic004G030100 Sobic008G016200--Sobic004G030100 Sobic007G140400 Sobic007G140400 Sobic008G016200--Sobic007G140400 Sobic010G017300 Sobic010G017300 Sobic008G016200--Sobic010G017300 Sobic001G263000 Sobic001G263000 Sobic008G016200--Sobic001G263000 Sobic003G196900 Sobic003G196900 Sobic001G096300--Sobic003G196900 Sobic010G172500 Sobic010G172500 Sobic001G096300--Sobic010G172500 Sobic006G280600 Sobic006G280600 Sobic001G096300--Sobic006G280600 Sobic001G096300--Sobic001G263000 Sobic007G171950 Sobic007G171950 Sobic001G096300--Sobic007G171950 Sobic001G307900 Sobic001G307900 Sobic001G096300--Sobic001G307900 Sobic001G067300 Sobic001G067300 Sobic001G096300--Sobic001G067300 Sobic001G464100 Sobic001G464100 Sobic001G096300--Sobic001G464100 Sobic007G095500 Sobic007G095500 Sobic001G096300--Sobic007G095500 Sobic004G185600 Sobic004G185600 Sobic003G062800--Sobic004G185600 Sobic001G489700 Sobic001G489700 Sobic003G062800--Sobic001G489700 Sobic001G291100 Sobic001G291100 Sobic003G062800--Sobic001G291100 Sobic006G252100 Sobic006G252100 Sobic003G062800--Sobic006G252100 Sobic010G249300 Sobic010G249300 Sobic003G062800--Sobic010G249300 Sobic004G291400 Sobic004G291400 Sobic003G062800--Sobic004G291400 Sobic003G314100 Sobic003G314100 Sobic003G062800--Sobic003G314100 Sobic003G062800--Sobic001G263000 Sobic002G268400 Sobic002G268400 Sobic003G062800--Sobic002G268400 Sobic006G255000--Sobic004G030100 Sobic010G051300 Sobic010G051300 Sobic006G255000--Sobic010G051300 Sobic003G328700 Sobic003G328700 Sobic006G255000--Sobic003G328700 Sobic006G255000--Sobic001G464100 Sobic004G065200 Sobic004G065200 Sobic006G255000--Sobic004G065200 Sobic001G394600 Sobic001G394600 Sobic006G255000--Sobic001G394600 Sobic006G255000--Sobic001G263000 Sobic006G255000--Sobic010G172500 Sobic006G244700 Sobic006G244700 Sobic006G255000--Sobic006G244700 Sobic004G327700 Sobic004G327700 Sobic006G016900--Sobic004G327700 Sobic006G016900--Sobic007G095500 Sobic001G415400 Sobic001G415400 Sobic006G016900--Sobic001G415400 Sobic001G056601 Sobic001G056601 Sobic006G016900--Sobic001G056601 Sobic001G484400 Sobic001G484400 Sobic006G016900--Sobic001G484400 Sobic006G010900 Sobic006G010900 Sobic006G016900--Sobic006G010900 Sobic001G069000 Sobic001G069000 Sobic006G016900--Sobic001G069000 Sobic009G196800 Sobic009G196800 Sobic006G016900--Sobic009G196800 Sobic004G274100 Sobic004G274100 Sobic006G016900--Sobic004G274100 Sobic006G256600 Sobic006G256600 Sobic003G193700--Sobic006G256600 Sobic004G307400 Sobic004G307400 Sobic003G193700--Sobic004G307400 Sobic004G016400 Sobic004G016400 Sobic003G193700--Sobic004G016400 Sobic001G291900 Sobic001G291900 Sobic003G193700--Sobic001G291900 Sobic010G023700 Sobic010G023700 Sobic003G193700--Sobic010G023700 Sobic001G295300 Sobic001G295300 Sobic003G193700--Sobic001G295300 Sobic003G387100 Sobic003G387100 Sobic003G193700--Sobic003G387100 Sobic010G255100 Sobic010G255100 Sobic003G193700--Sobic010G255100 Sobic005G184300 Sobic005G184300 Sobic003G193700--Sobic005G184300 Sobic007G002300 Sobic007G002300 Sobic004G030100--Sobic007G002300 Sobic006G058100 Sobic006G058100 Sobic004G030100--Sobic006G058100 Sobic010G005600 Sobic010G005600 Sobic004G030100--Sobic010G005600 Sobic002G143500 Sobic002G143500 Sobic004G030100--Sobic002G143500 Sobic010G175500 Sobic010G175500 Sobic004G030100--Sobic010G175500 Sobic009G178300 Sobic009G178300 Sobic004G030100--Sobic009G178300 Sobic001G000200 Sobic001G000200 Sobic004G030100--Sobic001G000200 Sobic004G021200 Sobic004G021200 Sobic004G030100--Sobic004G021200 Sobic001G261200 Sobic001G261200 Sobic004G030100--Sobic001G261200 Sobic006G010400 Sobic006G010400 Sobic007G140400--Sobic006G010400 Sobic008G051200 Sobic008G051200 Sobic007G140400--Sobic008G051200 Sobic001G401500 Sobic001G401500 Sobic007G140400--Sobic001G401500 Sobic001G407700 Sobic001G407700 Sobic007G140400--Sobic001G407700 Sobic003G146600 Sobic003G146600 Sobic007G140400--Sobic003G146600 Sobic002G359400 Sobic002G359400 Sobic007G140400--Sobic002G359400 Sobic004G017400 Sobic004G017400 Sobic007G140400--Sobic004G017400 Sobic006G086600 Sobic006G086600 Sobic007G140400--Sobic006G086600 Sobic001G244300 Sobic001G244300 Sobic007G140400--Sobic001G244300 Sobic002G010800 Sobic002G010800 Sobic010G017300--Sobic002G010800 Sobic010G264100 Sobic010G264100 Sobic010G017300--Sobic010G264100 Sobic009G005100 Sobic009G005100 Sobic010G017300--Sobic009G005100 Sobic003G256550 Sobic003G256550 Sobic010G017300--Sobic003G256550 Sobic010G017300--Sobic010G249300 Sobic010G256800 Sobic010G256800 Sobic010G017300--Sobic010G256800 Sobic003G401000 Sobic003G401000 Sobic010G017300--Sobic003G401000 Sobic002G301500 Sobic002G301500 Sobic010G017300--Sobic002G301500 Sobic010G017300--Sobic001G464100 Sobic009G004600 Sobic009G004600 Sobic001G263000--Sobic009G004600 Sobic001G263000--Sobic006G244700 Sobic009G033900 Sobic009G033900 Sobic001G263000--Sobic009G033900 Sobic002G209400 Sobic002G209400 Sobic001G263000--Sobic002G209400 Sobic001G263000--Sobic002G268400 Sobic002G039000 Sobic002G039000 Sobic001G263000--Sobic002G039000 Sobic004G074300 Sobic004G074300 Sobic001G263000--Sobic004G074300 Sobic004G356900 Sobic004G356900 Sobic001G263000--Sobic004G356900 Sobic010G057900 Sobic010G057900 Sobic001G263000--Sobic010G057900
Octagon: transcription factors


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