Gene annotation
Transcriptome id Sobic.006G016900.1
Synonym 1, Sb06g001610, ATCYSC1, BSAS3, CYSC1, ARATH,CAS
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
- (PubMedID : 27964718)
cysteine synthase, chloroplast/chromoplast precursor, putative, expressed
UniProt C5YC80
Pfam PF00291
Panther DB PTHR10314 PTHR10314:SF80
NCBI CDD KOG1252; Cystathionine beta-synthase and related enzymes
KEGG Orthology K13034; L-3-cyanoalanine synthase/ cysteine synthase
Gene Ontology GO:0005739; mitochondrion GO:0004124cysteine synthase activity


Orthologs (automatic annotation)
TAIR AT3G61440 : cysteine synthase C1
RAP-DB (Rice) LOC_Os04g08350.2 : cysteine synthase, chloroplast/chromoplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a012349
Brachypodium KQJ81418 , KQJ81417
Barley HORVU2Hr1G000280.8 , HORVU2Hr1G000280.9 , HORVU2Hr1G000280.2 , HORVU2Hr1G000280.3 , HORVU2Hr1G000280.1 , HORVU2Hr1G000280.6 , HORVU2Hr1G000280.7 , HORVU2Hr1G000280.4 , HORVU2Hr1G000280.5 , HORVU2Hr1G000250.1 , HORVU2Hr1G000280.10
Wheat TraesCS5A02G300400 , TraesCS5B02G300800
Populus -


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cDNA sequences
Sobic.006G016900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G327700 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
2 Sobic.007G095500 expressed protein -
3 Sobic.001G415400 PsbP, putative, expressed -
4 Sobic.001G056601 - K01695: tryptophan synthase alpha chain
5 Sobic.001G484400 copper-transporting ATPase PAA1, putative, expressed K01533: P-type Cu2+ transporter
6 Sobic.006G010900 expressed protein -
7 Sobic.001G069000 ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
8 Sobic.009G196800 cytochrome P450, putative, expressed -
9 Sobic.004G274100 expressed protein -
10 Sobic.001G314200 expressed protein -
11 Sobic.001G233400 Citrate transporter protein, putative, expressed -
12 Sobic.004G347800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
13 Sobic.010G023700 Transketolase(PubMedID : 26186930)@transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
14 Sobic.002G109000 tetratricopeptide repeat containing protein, putative, expressed -
15 Sobic.009G085200 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
16 Sobic.002G193800 transporter family protein, putative, expressed -
17 Sobic.009G113800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
18 Sobic.003G193700 carbamoyl-phosphate synthase large chain, putative, expressed K01955: carB, carbamoyl-phosphate synthase large subunit
19 Sobic.001G168250 - -
20 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase


Gene co-expression network
sample Sobic006G016900 Sobic006G016900 Sobic004G327700 Sobic004G327700 Sobic006G016900--Sobic004G327700 Sobic007G095500 Sobic007G095500 Sobic006G016900--Sobic007G095500 Sobic001G415400 Sobic001G415400 Sobic006G016900--Sobic001G415400 Sobic001G056601 Sobic001G056601 Sobic006G016900--Sobic001G056601 Sobic001G484400 Sobic001G484400 Sobic006G016900--Sobic001G484400 Sobic006G010900 Sobic006G010900 Sobic006G016900--Sobic006G010900 Sobic001G069000 Sobic001G069000 Sobic006G016900--Sobic001G069000 Sobic009G196800 Sobic009G196800 Sobic006G016900--Sobic009G196800 Sobic004G274100 Sobic004G274100 Sobic006G016900--Sobic004G274100 Sobic007G140800 Sobic007G140800 Sobic004G327700--Sobic007G140800 Sobic009G125400 Sobic009G125400 Sobic004G327700--Sobic009G125400 Sobic004G327700--Sobic004G274100 Sobic004G327700--Sobic001G069000 Sobic004G327700--Sobic006G010900 Sobic007G009200 Sobic007G009200 Sobic004G327700--Sobic007G009200 Sobic004G327700--Sobic006G016900 Sobic004G327700--Sobic001G484400 Sobic002G172700 Sobic002G172700 Sobic004G327700--Sobic002G172700 Sobic008G067100 Sobic008G067100 Sobic007G095500--Sobic008G067100 Sobic004G208600 Sobic004G208600 Sobic007G095500--Sobic004G208600 Sobic004G225600 Sobic004G225600 Sobic007G095500--Sobic004G225600 Sobic001G382800 Sobic001G382800 Sobic007G095500--Sobic001G382800 Sobic002G293600 Sobic002G293600 Sobic007G095500--Sobic002G293600 Sobic002G343400 Sobic002G343400 Sobic007G095500--Sobic002G343400 Sobic008G090900 Sobic008G090900 Sobic007G095500--Sobic008G090900 Sobic001G494500 Sobic001G494500 Sobic007G095500--Sobic001G494500 Sobic006G058100 Sobic006G058100 Sobic007G095500--Sobic006G058100 Sobic007G143700 Sobic007G143700 Sobic001G415400--Sobic007G143700 Sobic010G277600 Sobic010G277600 Sobic001G415400--Sobic010G277600 Sobic001G527000 Sobic001G527000 Sobic001G415400--Sobic001G527000 Sobic009G030900 Sobic009G030900 Sobic001G415400--Sobic009G030900 Sobic002G198600 Sobic002G198600 Sobic001G415400--Sobic002G198600 Sobic007G004600 Sobic007G004600 Sobic001G415400--Sobic007G004600 Sobic001G041800 Sobic001G041800 Sobic001G415400--Sobic001G041800 Sobic004G175500 Sobic004G175500 Sobic001G415400--Sobic004G175500 Sobic003G132100 Sobic003G132100 Sobic001G415400--Sobic003G132100 Sobic010G176200 Sobic010G176200 Sobic001G056601--Sobic010G176200 Sobic002G230100 Sobic002G230100 Sobic001G056601--Sobic002G230100 Sobic003G160200 Sobic003G160200 Sobic001G056601--Sobic003G160200 Sobic001G382000 Sobic001G382000 Sobic001G056601--Sobic001G382000 Sobic007G194300 Sobic007G194300 Sobic001G056601--Sobic007G194300 Sobic001G168250 Sobic001G168250 Sobic001G056601--Sobic001G168250 Sobic001G032700 Sobic001G032700 Sobic001G056601--Sobic001G032700 Sobic001G327800 Sobic001G327800 Sobic001G056601--Sobic001G327800 Sobic002G399100 Sobic002G399100 Sobic001G056601--Sobic002G399100 Sobic001G065600 Sobic001G065600 Sobic001G484400--Sobic001G065600 Sobic001G305600 Sobic001G305600 Sobic001G484400--Sobic001G305600 Sobic001G073900 Sobic001G073900 Sobic001G484400--Sobic001G073900 Sobic008G115900 Sobic008G115900 Sobic001G484400--Sobic008G115900 Sobic003G443500 Sobic003G443500 Sobic001G484400--Sobic003G443500 Sobic001G484400--Sobic004G327700 Sobic004G347800 Sobic004G347800 Sobic001G484400--Sobic004G347800 Sobic001G484400--Sobic006G010900 Sobic008G001900 Sobic008G001900 Sobic001G484400--Sobic008G001900 Sobic006G010900--Sobic001G069000 Sobic003G387100 Sobic003G387100 Sobic006G010900--Sobic003G387100 Sobic006G210400 Sobic006G210400 Sobic006G010900--Sobic006G210400 Sobic003G160800 Sobic003G160800 Sobic006G010900--Sobic003G160800 Sobic007G085800 Sobic007G085800 Sobic006G010900--Sobic007G085800 Sobic006G207800 Sobic006G207800 Sobic006G010900--Sobic006G207800 Sobic008G116300 Sobic008G116300 Sobic006G010900--Sobic008G116300 Sobic003G077400 Sobic003G077400 Sobic006G010900--Sobic003G077400 Sobic003G412900 Sobic003G412900 Sobic006G010900--Sobic003G412900 Sobic001G069000--Sobic003G412900 Sobic001G069000--Sobic009G125400 Sobic002G098800 Sobic002G098800 Sobic001G069000--Sobic002G098800 Sobic001G069000--Sobic006G010900 Sobic001G536800 Sobic001G536800 Sobic001G069000--Sobic001G536800 Sobic004G308700 Sobic004G308700 Sobic001G069000--Sobic004G308700 Sobic001G069000--Sobic003G387100 Sobic001G314200 Sobic001G314200 Sobic001G069000--Sobic001G314200 Sobic004G272100 Sobic004G272100 Sobic001G069000--Sobic004G272100 Sobic010G019700 Sobic010G019700 Sobic009G196800--Sobic010G019700 Sobic007G171600 Sobic007G171600 Sobic009G196800--Sobic007G171600 Sobic004G023200 Sobic004G023200 Sobic009G196800--Sobic004G023200 Sobic001G233400 Sobic001G233400 Sobic009G196800--Sobic001G233400 Sobic003G069100 Sobic003G069100 Sobic009G196800--Sobic003G069100 Sobic009G196800--Sobic002G098800 Sobic009G196800--Sobic001G069000 Sobic002G033800 Sobic002G033800 Sobic009G196800--Sobic002G033800 Sobic009G085500 Sobic009G085500 Sobic009G196800--Sobic009G085500 Sobic004G274100--Sobic007G140800 Sobic003G303700 Sobic003G303700 Sobic004G274100--Sobic003G303700 Sobic004G274100--Sobic002G098800 Sobic009G113800 Sobic009G113800 Sobic004G274100--Sobic009G113800 Sobic001G102800 Sobic001G102800 Sobic004G274100--Sobic001G102800 Sobic008G021300 Sobic008G021300 Sobic004G274100--Sobic008G021300 Sobic010G201700 Sobic010G201700 Sobic004G274100--Sobic010G201700 Sobic004G274100--Sobic001G069000 Sobic008G188600 Sobic008G188600 Sobic004G274100--Sobic008G188600
Octagon: transcription factors


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