Gene annotation
Transcriptome id Sobic.003G158400.1
Synonym TOPP8, Sb03g013800
Functional annotation Ser/Thr protein phosphatase family protein, putative, expressed
UniProt C5XJW2
Pfam PF16891 PF00149
Panther DB PTHR11668 PTHR11668:SF262
NCBI CDD KOG0374; Serine/threonine specific protein phosphatase PP1, catalytic subunit
KEGG Orthology K06269; serine/threonine-protein phosphatase PP1 catalytic subunit
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT5G27840 : Calcineurin-like metallo-phosphoesterase superfamily protein
RAP-DB (Rice) LOC_Os01g24750.1 : Ser/Thr protein phosphatase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a036165 , Zm00025a036905
Brachypodium KQK07410 , KQK04258 , KQK07407
Barley HORVU3Hr1G044550.9 , HORVU3Hr1G044550.8 , HORVU3Hr1G044550.3 , HORVU3Hr1G044550.2 , HORVU3Hr1G044550.1 , HORVU3Hr1G044550.7 , HORVU3Hr1G044550.6 , HORVU3Hr1G044550.5 , HORVU3Hr1G044550.4 , HORVU1Hr1G022370.1 , HORVU1Hr1G022370.3 , HORVU1Hr1G022370.2 , HORVU1Hr1G022370.5 , HORVU1Hr1G022370.4 , HORVU1Hr1G022370.6 , HORVU1Hr1G022370.9 , HORVU1Hr1G022370.8
Wheat TraesCS3B02G226800 , TraesCS1B02G128100 , TraesCS3A02G195500 , TraesCS1D02G104400 , TraesCS1A02G095500 , TraesCS1A02G095500 , TraesCS3D02G199300 , TraesCS1D02G104400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G177500 thaumatin, putative, expressed -
2 Sobic.005G002600 - -
3 Sobic.009G228201 - -
4 Sobic.010G077600 gb protein, putative, expressed -
5 Sobic.010G019100 expressed protein -
6 Sobic.003G261300 arginine/serine-rich coiled-coil protein 1, putative, expressed -
7 Sobic.004G016100 expressed protein -
8 Sobic.006G184300 OsFBX148 - F-box domain containing protein, expressed -
9 Sobic.003G324000 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed K00074: paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase
10 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
11 Sobic.009G257300 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
12 Sobic.010G005700 expressed protein -
13 Sobic.007G150200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MTD1, putative, expressed -
14 Sobic.001G032100 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
15 Sobic.003G093600 methyltransferase, putative, expressed -
16 Sobic.003G044900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
17 Sobic.003G407100 CBS domain-containing protein, putative, expressed -
18 Sobic.006G046000 - -
19 Sobic.001G281700 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
20 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55


Gene co-expression network
sample Sobic003G158400 Sobic003G158400 Sobic007G177500 Sobic007G177500 Sobic003G158400--Sobic007G177500 Sobic005G002600 Sobic005G002600 Sobic003G158400--Sobic005G002600 Sobic009G228201 Sobic009G228201 Sobic003G158400--Sobic009G228201 Sobic010G077600 Sobic010G077600 Sobic003G158400--Sobic010G077600 Sobic010G019100 Sobic010G019100 Sobic003G158400--Sobic010G019100 Sobic003G261300 Sobic003G261300 Sobic003G158400--Sobic003G261300 Sobic004G016100 Sobic004G016100 Sobic003G158400--Sobic004G016100 Sobic006G184300 Sobic006G184300 Sobic003G158400--Sobic006G184300 Sobic003G324000 Sobic003G324000 Sobic003G158400--Sobic003G324000 Sobic004G259300 Sobic004G259300 Sobic007G177500--Sobic004G259300 Sobic007G177500--Sobic004G016100 Sobic004G116600 Sobic004G116600 Sobic007G177500--Sobic004G116600 Sobic003G005100 Sobic003G005100 Sobic007G177500--Sobic003G005100 Sobic007G192400 Sobic007G192400 Sobic007G177500--Sobic007G192400 Sobic004G218300 Sobic004G218300 Sobic007G177500--Sobic004G218300 Sobic007G077532 Sobic007G077532 Sobic007G177500--Sobic007G077532 Sobic001G281700 Sobic001G281700 Sobic007G177500--Sobic001G281700 Sobic006G130200 Sobic006G130200 Sobic007G177500--Sobic006G130200 Sobic007G052900 Sobic007G052900 Sobic005G002600--Sobic007G052900 Sobic010G280100 Sobic010G280100 Sobic005G002600--Sobic010G280100 Sobic009G198900 Sobic009G198900 Sobic005G002600--Sobic009G198900 Sobic002G376700 Sobic002G376700 Sobic005G002600--Sobic002G376700 Sobic005G002600--Sobic003G324000 Sobic010G056200 Sobic010G056200 Sobic005G002600--Sobic010G056200 Sobic006G180432 Sobic006G180432 Sobic005G002600--Sobic006G180432 Sobic004G083700 Sobic004G083700 Sobic005G002600--Sobic004G083700 Sobic007G130100 Sobic007G130100 Sobic005G002600--Sobic007G130100 Sobic003G015000 Sobic003G015000 Sobic009G228201--Sobic003G015000 Sobic010G278500 Sobic010G278500 Sobic009G228201--Sobic010G278500 Sobic009G257300 Sobic009G257300 Sobic009G228201--Sobic009G257300 Sobic008G079100 Sobic008G079100 Sobic009G228201--Sobic008G079100 Sobic004G212800 Sobic004G212800 Sobic009G228201--Sobic004G212800 Sobic008G167300 Sobic008G167300 Sobic009G228201--Sobic008G167300 Sobic010G248200 Sobic010G248200 Sobic009G228201--Sobic010G248200 Sobic001G345333 Sobic001G345333 Sobic009G228201--Sobic001G345333 Sobic006G046000 Sobic006G046000 Sobic009G228201--Sobic006G046000 Sobic007G191100 Sobic007G191100 Sobic010G077600--Sobic007G191100 Sobic003G044900 Sobic003G044900 Sobic010G077600--Sobic003G044900 Sobic003G093600 Sobic003G093600 Sobic010G077600--Sobic003G093600 Sobic009G214600 Sobic009G214600 Sobic010G077600--Sobic009G214600 Sobic003G185200 Sobic003G185200 Sobic010G077600--Sobic003G185200 Sobic007G094801 Sobic007G094801 Sobic010G077600--Sobic007G094801 Sobic010G077600--Sobic009G257300 Sobic004G143700 Sobic004G143700 Sobic010G077600--Sobic004G143700 Sobic004G119000 Sobic004G119000 Sobic010G077600--Sobic004G119000 Sobic010G019100--Sobic003G093600 Sobic005G130200 Sobic005G130200 Sobic010G019100--Sobic005G130200 Sobic009G087800 Sobic009G087800 Sobic010G019100--Sobic009G087800 Sobic007G023700 Sobic007G023700 Sobic010G019100--Sobic007G023700 Sobic010G019100--Sobic009G257300 Sobic001G194900 Sobic001G194900 Sobic010G019100--Sobic001G194900 Sobic010G019100--Sobic009G198900 Sobic005G187200 Sobic005G187200 Sobic010G019100--Sobic005G187200 Sobic004G271900 Sobic004G271900 Sobic010G019100--Sobic004G271900 Sobic010G026400 Sobic010G026400 Sobic003G261300--Sobic010G026400 Sobic002G157300 Sobic002G157300 Sobic003G261300--Sobic002G157300 Sobic002G365100 Sobic002G365100 Sobic003G261300--Sobic002G365100 Sobic006G128800 Sobic006G128800 Sobic003G261300--Sobic006G128800 Sobic003G220200 Sobic003G220200 Sobic003G261300--Sobic003G220200 Sobic003G012500 Sobic003G012500 Sobic003G261300--Sobic003G012500 Sobic007G205800 Sobic007G205800 Sobic003G261300--Sobic007G205800 Sobic004G349900 Sobic004G349900 Sobic003G261300--Sobic004G349900 Sobic006G088100 Sobic006G088100 Sobic003G261300--Sobic006G088100 Sobic004G016100--Sobic007G077532 Sobic004G016100--Sobic004G259300 Sobic004G016100--Sobic007G177500 Sobic004G141400 Sobic004G141400 Sobic004G016100--Sobic004G141400 Sobic005G170000 Sobic005G170000 Sobic004G016100--Sobic005G170000 Sobic004G016100--Sobic007G192400 Sobic003G402900 Sobic003G402900 Sobic004G016100--Sobic003G402900 Sobic009G228400 Sobic009G228400 Sobic004G016100--Sobic009G228400 Sobic004G016100--Sobic004G218300 Sobic002G108800 Sobic002G108800 Sobic006G184300--Sobic002G108800 Sobic006G184300--Sobic007G023700 Sobic007G156500 Sobic007G156500 Sobic006G184300--Sobic007G156500 Sobic002G039500 Sobic002G039500 Sobic006G184300--Sobic002G039500 Sobic008G126200 Sobic008G126200 Sobic006G184300--Sobic008G126200 Sobic004G221900 Sobic004G221900 Sobic006G184300--Sobic004G221900 Sobic005G012000 Sobic005G012000 Sobic006G184300--Sobic005G012000 Sobic006G184300--Sobic009G257300 Sobic006G184300--Sobic003G093600 Sobic003G324000--Sobic009G198900 Sobic001G368400 Sobic001G368400 Sobic003G324000--Sobic001G368400 Sobic003G324000--Sobic005G187200 Sobic003G324000--Sobic010G056200 Sobic001G479500 Sobic001G479500 Sobic003G324000--Sobic001G479500 Sobic003G324000--Sobic010G280100 Sobic003G324000--Sobic007G205800 Sobic003G324000--Sobic009G087800 Sobic003G258400 Sobic003G258400 Sobic003G324000--Sobic003G258400
Octagon: transcription factors


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