Gene annotation
Transcriptome id Sobic.003G177700.1
Synonym Sb03g022920
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
tetratricopeptide repeat containing protein, putative, expressed
UniProt C5XM73
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g34470.1 : tetratricopeptide repeat containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a028892 , Zm00025a028895
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G518200 - K06928: nucleoside-triphosphatase
2 Sobic.009G160500 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
3 Sobic.009G231100 3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed K00979: 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase)
4 Sobic.002G386900 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
5 Sobic.006G220400 exonuclease, putative, expressed -
6 Sobic.010G153000 expressed protein -
7 Sobic.001G229300 expressed protein -
8 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
9 Sobic.009G066200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@uncharacterized protein At4g06744 precursor, putative, expressed -
10 Sobic.006G192800 expressed protein -
11 Sobic.006G237500 PPR repeat domain containing protein, putative, expressed -
12 Sobic.003G360300 exostosin family domain containing protein, expressed -
13 Sobic.002G123600 expressed protein -
14 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
15 Sobic.004G141600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@vegetative storage protein, putative, expressed -
16 Sobic.002G235600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.008G039000 expressed protein -
18 Sobic.003G331000 exostosin family domain containing protein, expressed -
19 Sobic.001G242300 expressed protein -
20 Sobic.008G075200 2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed K01627: 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase)


Gene co-expression network
sample Sobic003G177700 Sobic003G177700 Sobic001G518200 Sobic001G518200 Sobic003G177700--Sobic001G518200 Sobic009G160500 Sobic009G160500 Sobic003G177700--Sobic009G160500 Sobic009G231100 Sobic009G231100 Sobic003G177700--Sobic009G231100 Sobic002G386900 Sobic002G386900 Sobic003G177700--Sobic002G386900 Sobic006G220400 Sobic006G220400 Sobic003G177700--Sobic006G220400 Sobic010G153000 Sobic010G153000 Sobic003G177700--Sobic010G153000 Sobic001G229300 Sobic001G229300 Sobic003G177700--Sobic001G229300 Sobic001G123600 Sobic001G123600 Sobic003G177700--Sobic001G123600 Sobic009G066200 Sobic009G066200 Sobic003G177700--Sobic009G066200 Sobic001G518200--Sobic009G231100 Sobic002G072300 Sobic002G072300 Sobic001G518200--Sobic002G072300 Sobic009G063800 Sobic009G063800 Sobic001G518200--Sobic009G063800 Sobic001G518600 Sobic001G518600 Sobic001G518200--Sobic001G518600 Sobic003G202100 Sobic003G202100 Sobic001G518200--Sobic003G202100 Sobic001G309200 Sobic001G309200 Sobic001G518200--Sobic001G309200 Sobic003G085500 Sobic003G085500 Sobic001G518200--Sobic003G085500 Sobic010G153400 Sobic010G153400 Sobic001G518200--Sobic010G153400 Sobic003G047900 Sobic003G047900 Sobic001G518200--Sobic003G047900 Sobic009G160500--Sobic002G386900 Sobic001G032200 Sobic001G032200 Sobic009G160500--Sobic001G032200 Sobic002G189600 Sobic002G189600 Sobic009G160500--Sobic002G189600 Sobic002G151000 Sobic002G151000 Sobic009G160500--Sobic002G151000 Sobic004G162500 Sobic004G162500 Sobic009G160500--Sobic004G162500 Sobic003G304400 Sobic003G304400 Sobic009G160500--Sobic003G304400 Sobic003G113300 Sobic003G113300 Sobic009G160500--Sobic003G113300 Sobic002G398700 Sobic002G398700 Sobic009G160500--Sobic002G398700 Sobic001G495400 Sobic001G495400 Sobic009G160500--Sobic001G495400 Sobic009G201900 Sobic009G201900 Sobic009G231100--Sobic009G201900 Sobic002G225000 Sobic002G225000 Sobic009G231100--Sobic002G225000 Sobic002G377300 Sobic002G377300 Sobic009G231100--Sobic002G377300 Sobic009G231100--Sobic001G518200 Sobic003G420900 Sobic003G420900 Sobic009G231100--Sobic003G420900 Sobic003G223000 Sobic003G223000 Sobic009G231100--Sobic003G223000 Sobic005G031000 Sobic005G031000 Sobic009G231100--Sobic005G031000 Sobic001G104300 Sobic001G104300 Sobic009G231100--Sobic001G104300 Sobic005G022000 Sobic005G022000 Sobic009G231100--Sobic005G022000 Sobic002G386600 Sobic002G386600 Sobic002G386900--Sobic002G386600 Sobic004G097900 Sobic004G097900 Sobic002G386900--Sobic004G097900 Sobic002G386900--Sobic001G123600 Sobic006G191200 Sobic006G191200 Sobic002G386900--Sobic006G191200 Sobic007G034200 Sobic007G034200 Sobic002G386900--Sobic007G034200 Sobic001G051400 Sobic001G051400 Sobic002G386900--Sobic001G051400 Sobic001G200200 Sobic001G200200 Sobic002G386900--Sobic001G200200 Sobic002G239601 Sobic002G239601 Sobic002G386900--Sobic002G239601 Sobic002G292800 Sobic002G292800 Sobic002G386900--Sobic002G292800 Sobic001G043200 Sobic001G043200 Sobic006G220400--Sobic001G043200 Sobic005G123400 Sobic005G123400 Sobic006G220400--Sobic005G123400 Sobic009G227100 Sobic009G227100 Sobic006G220400--Sobic009G227100 Sobic006G012300 Sobic006G012300 Sobic006G220400--Sobic006G012300 Sobic001G203600 Sobic001G203600 Sobic006G220400--Sobic001G203600 Sobic006G103700 Sobic006G103700 Sobic006G220400--Sobic006G103700 Sobic007G204000 Sobic007G204000 Sobic006G220400--Sobic007G204000 Sobic004G194100 Sobic004G194100 Sobic006G220400--Sobic004G194100 Sobic004G334200 Sobic004G334200 Sobic006G220400--Sobic004G334200 Sobic006G262700 Sobic006G262700 Sobic010G153000--Sobic006G262700 Sobic007G118075 Sobic007G118075 Sobic010G153000--Sobic007G118075 Sobic002G011100 Sobic002G011100 Sobic010G153000--Sobic002G011100 Sobic009G116400 Sobic009G116400 Sobic010G153000--Sobic009G116400 Sobic005G154700 Sobic005G154700 Sobic010G153000--Sobic005G154700 Sobic004G089500 Sobic004G089500 Sobic010G153000--Sobic004G089500 Sobic001G204700 Sobic001G204700 Sobic010G153000--Sobic001G204700 Sobic003G397100 Sobic003G397100 Sobic010G153000--Sobic003G397100 Sobic006G028700 Sobic006G028700 Sobic010G153000--Sobic006G028700 Sobic001G229300--Sobic001G123600 Sobic003G129300 Sobic003G129300 Sobic001G229300--Sobic003G129300 Sobic004G354100 Sobic004G354100 Sobic001G229300--Sobic004G354100 Sobic004G256300 Sobic004G256300 Sobic001G229300--Sobic004G256300 Sobic003G010900 Sobic003G010900 Sobic001G229300--Sobic003G010900 Sobic002G066800 Sobic002G066800 Sobic001G229300--Sobic002G066800 Sobic003G222700 Sobic003G222700 Sobic001G229300--Sobic003G222700 Sobic002G142700 Sobic002G142700 Sobic001G229300--Sobic002G142700 Sobic006G106600 Sobic006G106600 Sobic001G229300--Sobic006G106600 Sobic001G123600--Sobic006G191200 Sobic001G123600--Sobic001G229300 Sobic003G360300 Sobic003G360300 Sobic001G123600--Sobic003G360300 Sobic001G123600--Sobic007G034200 Sobic001G123600--Sobic002G386900 Sobic010G269300 Sobic010G269300 Sobic001G123600--Sobic010G269300 Sobic009G120400 Sobic009G120400 Sobic001G123600--Sobic009G120400 Sobic003G299500 Sobic003G299500 Sobic001G123600--Sobic003G299500 Sobic001G123600--Sobic003G010900 Sobic001G131900 Sobic001G131900 Sobic009G066200--Sobic001G131900 Sobic002G322700 Sobic002G322700 Sobic009G066200--Sobic002G322700 Sobic009G066200--Sobic001G309200 Sobic005G045800 Sobic005G045800 Sobic009G066200--Sobic005G045800 Sobic002G348400 Sobic002G348400 Sobic009G066200--Sobic002G348400 Sobic006G265800 Sobic006G265800 Sobic009G066200--Sobic006G265800 Sobic001G433600 Sobic001G433600 Sobic009G066200--Sobic001G433600 Sobic004G298600 Sobic004G298600 Sobic009G066200--Sobic004G298600 Sobic001G385300 Sobic001G385300 Sobic009G066200--Sobic001G385300
Octagon: transcription factors


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