Gene annotation
| Transcriptome id | Sobic.003G185700.1 |
|---|---|
| Synonym | Sb03g024900 |
| Functional annotation | zinc finger family protein, putative, expressed |
| UniProt | A0A1W0VY06 |
| Pfam | PF00641 |
| Panther DB | PTHR23111 PTHR23111:SF33 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0008270; zinc ion binding |
Orthologs (automatic annotation)
| TAIR | AT3G15680 : Ran BP2/NZF zinc finger-like superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g37460.1 : zinc finger family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a028802 , Zm00025a038310 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G126300 | expressed protein | - |
| 2 | Sobic.006G160400 | peroxisomal biogenesis factor 11, putative, expressed | - |
| 3 | Sobic.010G164200 | osFTL12 FT-Like12 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed | K16223: protein FLOWERING LOCUS T |
| 4 | Sobic.005G188600 | - | - |
| 5 | Sobic.003G398800 | expressed protein | - |
| 6 | Sobic.005G165500 | OsSub17 - Putative Subtilisin homologue, expressed | - |
| 7 | Sobic.001G158900 | helix-loop-helix DNA-binding domain containing protein, expressed | K16189: phytochrome-interacting factor 4 |
| 8 | Sobic.001G097100 | -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed | K00600: glyA, glycine hydroxymethyltransferase |
| 9 | Sobic.009G056700 | 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed | K01103: 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 3 |
| 10 | Sobic.003G431900 | -(PubMedID : 26976818)@expressed protein | K07562: nonsense-mediated mRNA decay protein 3 |
| 11 | Sobic.004G121400 | CAX 1c(PubMedID : 22196357)@cation exchanger 3(PubMedID : 26320239)@sodium/calcium exchanger protein, putative, expressed | K07300: chaA, Ca2+:H+ antiporter |
| 12 | Sobic.005G089600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed | K00696: sucrose-phosphate synthase |
| 13 | Sobic.008G117000 | expressed protein | K13457: RPM1, disease resistance protein RPM1 |
| 14 | Sobic.010G067100 | glutathione peroxidase, putative, expressed | K00432: gpx, btuE, glutathione peroxidase |
| 15 | Sobic.002G324500 | PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed | K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase |
| 16 | Sobic.003G185100 | peptide transporter PTR2, putative, expressed | - |
| 17 | Sobic.005G111200 | PB1 domain containing protein, expressed | - |
| 18 | Sobic.003G367500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed | K03841: FBP, fructose-1,6-bisphosphatase I |
| 19 | Sobic.008G053200 | fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed | K01623: fructose-bisphosphate aldolase, class I |
| 20 | Sobic.003G024300 | glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed | K05941: glutathione gamma-glutamylcysteinyltransferase |
Gene co-expression network
Octagon: transcription factors
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