Gene annotation
Transcriptome id Sobic.003G346700.1
Synonym Sb03g039020
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt C5XP17
Pfam PF16543
Panther DB PTHR12681 PTHR12681:SF4
NCBI CDD KOG1763; Uncharacterized conserved protein, contains CCCH-type Zn-finger
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20280 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os01g61830.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a026969
Brachypodium KQK10460
Barley HORVU3Hr1G087360.3 , HORVU3Hr1G087360.2 , HORVU3Hr1G087360.5 , HORVU3Hr1G087360.4
Wheat TraesCS3D02G347300 , TraesCS3B02G385900 , TraesCS3B02G385900 , TraesCS3A02G353200 , TraesCS3A02G353200 , TraesCS3A02G353200
Populus -


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cDNA sequences
Sobic.003G346700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G249100 ZOS8-11 - C2H2 zinc finger protein, expressed -
2 Sobic.010G209000 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
3 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
4 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
5 Sobic.003G006300 expressed protein -
6 Sobic.004G088501 - K17302: COPB2, coatomer subunit beta'
7 Sobic.009G214900 expressed protein -
8 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
9 Sobic.003G422900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
10 Sobic.002G299000 ribonuclease 2-5A family protein, expressed -
11 Sobic.010G014100 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
12 Sobic.001G193300 TBC domain containing protein, expressed -
13 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
14 Sobic.010G206300 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
15 Sobic.001G102700 metalloendopeptidase/ metallopeptidase/ zinc ion binding protein, putative, expressed K01404: leishmanolysin
16 Sobic.008G070800 expressed protein -
17 Sobic.009G068500 expressed protein -
18 Sobic.004G176400 ATP binding protein, putative, expressed K06883: uncharacterized protein
19 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
20 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43


Gene co-expression network
sample Sobic003G346700 Sobic003G346700 Sobic010G249100 Sobic010G249100 Sobic003G346700--Sobic010G249100 Sobic010G209000 Sobic010G209000 Sobic003G346700--Sobic010G209000 Sobic008G082500 Sobic008G082500 Sobic003G346700--Sobic008G082500 Sobic008G124900 Sobic008G124900 Sobic003G346700--Sobic008G124900 Sobic003G006300 Sobic003G006300 Sobic003G346700--Sobic003G006300 Sobic004G088501 Sobic004G088501 Sobic003G346700--Sobic004G088501 Sobic009G214900 Sobic009G214900 Sobic003G346700--Sobic009G214900 Sobic001G007000 Sobic001G007000 Sobic003G346700--Sobic001G007000 Sobic003G422900 Sobic003G422900 Sobic003G346700--Sobic003G422900 Sobic001G220300 Sobic001G220300 Sobic010G249100--Sobic001G220300 Sobic010G249100--Sobic008G124900 Sobic001G392300 Sobic001G392300 Sobic010G249100--Sobic001G392300 Sobic006G204800 Sobic006G204800 Sobic010G249100--Sobic006G204800 Sobic010G118950 Sobic010G118950 Sobic010G249100--Sobic010G118950 Sobic010G053800 Sobic010G053800 Sobic010G249100--Sobic010G053800 Sobic001G205200 Sobic001G205200 Sobic010G249100--Sobic001G205200 Sobic004G353000 Sobic004G353000 Sobic010G249100--Sobic004G353000 Sobic010G275500 Sobic010G275500 Sobic010G249100--Sobic010G275500 Sobic007G075900 Sobic007G075900 Sobic010G209000--Sobic007G075900 Sobic006G101700 Sobic006G101700 Sobic010G209000--Sobic006G101700 Sobic010G209000--Sobic008G124900 Sobic001G515100 Sobic001G515100 Sobic010G209000--Sobic001G515100 Sobic006G017000 Sobic006G017000 Sobic010G209000--Sobic006G017000 Sobic007G166400 Sobic007G166400 Sobic010G209000--Sobic007G166400 Sobic008G050800 Sobic008G050800 Sobic010G209000--Sobic008G050800 Sobic001G360200 Sobic001G360200 Sobic010G209000--Sobic001G360200 Sobic010G209000--Sobic001G392300 Sobic009G084900 Sobic009G084900 Sobic008G082500--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic008G082500--Sobic010G185400 Sobic010G206300 Sobic010G206300 Sobic008G082500--Sobic010G206300 Sobic006G077200 Sobic006G077200 Sobic008G082500--Sobic006G077200 Sobic010G059500 Sobic010G059500 Sobic008G082500--Sobic010G059500 Sobic001G493200 Sobic001G493200 Sobic008G082500--Sobic001G493200 Sobic002G020700 Sobic002G020700 Sobic008G082500--Sobic002G020700 Sobic001G145400 Sobic001G145400 Sobic008G082500--Sobic001G145400 Sobic004G023100 Sobic004G023100 Sobic008G082500--Sobic004G023100 Sobic007G093800 Sobic007G093800 Sobic008G124900--Sobic007G093800 Sobic003G119700 Sobic003G119700 Sobic008G124900--Sobic003G119700 Sobic006G033200 Sobic006G033200 Sobic008G124900--Sobic006G033200 Sobic001G096000 Sobic001G096000 Sobic008G124900--Sobic001G096000 Sobic010G278200 Sobic010G278200 Sobic008G124900--Sobic010G278200 Sobic006G131000 Sobic006G131000 Sobic008G124900--Sobic006G131000 Sobic003G104000 Sobic003G104000 Sobic008G124900--Sobic003G104000 Sobic008G124900--Sobic010G249100 Sobic009G068500 Sobic009G068500 Sobic008G124900--Sobic009G068500 Sobic003G006300--Sobic009G068500 Sobic003G365300 Sobic003G365300 Sobic003G006300--Sobic003G365300 Sobic001G263600 Sobic001G263600 Sobic003G006300--Sobic001G263600 Sobic003G195000 Sobic003G195000 Sobic003G006300--Sobic003G195000 Sobic003G006300--Sobic001G007000 Sobic003G264100 Sobic003G264100 Sobic003G006300--Sobic003G264100 Sobic003G404500 Sobic003G404500 Sobic003G006300--Sobic003G404500 Sobic002G359400 Sobic002G359400 Sobic003G006300--Sobic002G359400 Sobic010G131900 Sobic010G131900 Sobic003G006300--Sobic010G131900 Sobic004G088450 Sobic004G088450 Sobic004G088501--Sobic004G088450 Sobic009G126300 Sobic009G126300 Sobic004G088501--Sobic009G126300 Sobic003G337300 Sobic003G337300 Sobic004G088501--Sobic003G337300 Sobic004G178300 Sobic004G178300 Sobic004G088501--Sobic004G178300 Sobic006G034500 Sobic006G034500 Sobic004G088501--Sobic006G034500 Sobic001G493700 Sobic001G493700 Sobic004G088501--Sobic001G493700 Sobic004G088501--Sobic006G131000 Sobic001G281100 Sobic001G281100 Sobic004G088501--Sobic001G281100 Sobic004G322400 Sobic004G322400 Sobic004G088501--Sobic004G322400 Sobic006G202200 Sobic006G202200 Sobic009G214900--Sobic006G202200 Sobic009G049400 Sobic009G049400 Sobic009G214900--Sobic009G049400 Sobic009G229600 Sobic009G229600 Sobic009G214900--Sobic009G229600 Sobic003G187200 Sobic003G187200 Sobic009G214900--Sobic003G187200 Sobic007G125000 Sobic007G125000 Sobic009G214900--Sobic007G125000 Sobic006G163800 Sobic006G163800 Sobic009G214900--Sobic006G163800 Sobic009G126600 Sobic009G126600 Sobic009G214900--Sobic009G126600 Sobic009G214900--Sobic010G185400 Sobic009G170400 Sobic009G170400 Sobic009G214900--Sobic009G170400 Sobic001G007000--Sobic009G068500 Sobic010G251000 Sobic010G251000 Sobic001G007000--Sobic010G251000 Sobic001G007000--Sobic001G392300 Sobic001G007000--Sobic002G359400 Sobic004G353200 Sobic004G353200 Sobic001G007000--Sobic004G353200 Sobic010G205800 Sobic010G205800 Sobic001G007000--Sobic010G205800 Sobic008G046500 Sobic008G046500 Sobic001G007000--Sobic008G046500 Sobic001G080700 Sobic001G080700 Sobic001G007000--Sobic001G080700 Sobic001G031100 Sobic001G031100 Sobic001G007000--Sobic001G031100 Sobic010G020400 Sobic010G020400 Sobic003G422900--Sobic010G020400 Sobic003G155900 Sobic003G155900 Sobic003G422900--Sobic003G155900 Sobic002G303600 Sobic002G303600 Sobic003G422900--Sobic002G303600 Sobic009G164000 Sobic009G164000 Sobic003G422900--Sobic009G164000 Sobic009G044800 Sobic009G044800 Sobic003G422900--Sobic009G044800 Sobic003G422900--Sobic001G392300 Sobic004G257100 Sobic004G257100 Sobic003G422900--Sobic004G257100 Sobic002G256200 Sobic002G256200 Sobic003G422900--Sobic002G256200 Sobic003G422900--Sobic008G082500
Octagon: transcription factors


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