Gene annotation
Transcriptome id Sobic.003G348000.2,Sobic.003G348000.4,Sobic.003G348000.3
Synonym Sb03g039100
Functional annotation SAC3/GANP family protein, putative, expressed
UniProt A0A1W0W0A9
Pfam PF10075
Panther DB PTHR12436 PTHR12436:SF20
NCBI CDD KOG1861; Leucine permease transcriptional regulator
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G39340 : SAC3/GANP/Nin1/mts3/eIF-3 p25 family
RAP-DB (Rice) LOC_Os01g61930.1 : SAC3/GANP family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK10471 , KQK10470 , KQK10472 , KQK10468 , KQK10469 , PNT73151 , PNT73150
Barley HORVU3Hr1G087140.1 , HORVU3Hr1G087140.3 , HORVU3Hr1G087140.2 , HORVU3Hr1G087140.5 , HORVU3Hr1G087140.4 , HORVU3Hr1G087140.7 , HORVU3Hr1G087140.6 , HORVU3Hr1G087140.9 , HORVU3Hr1G087140.8 , HORVU3Hr1G087140.20 , HORVU3Hr1G087140.23 , HORVU3Hr1G087140.24 , HORVU3Hr1G087140.25 , HORVU3Hr1G087140.26 , HORVU3Hr1G087140.27 , HORVU3Hr1G087140.15 , HORVU3Hr1G087140.14 , HORVU3Hr1G087140.17 , HORVU3Hr1G087140.16 , HORVU3Hr1G087140.11 , HORVU3Hr1G087140.10 , HORVU3Hr1G087140.13 , HORVU3Hr1G087140.12 , HORVU3Hr1G087140.19 , HORVU3Hr1G087140.18
Wheat TraesCS3B02G387400 , TraesCS3B02G387400 , TraesCS3A02G354400 , TraesCS3A02G354400 , TraesCS3A02G354400 , TraesCS3D02G348300 , TraesCS3D02G348300 , TraesCS3D02G348300 , TraesCS3D02G348300 , TraesCS3D02G348300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G227501 - -
2 Sobic.004G154532 - -
3 Sobic.004G276900 leucyl-tRNA synthetase, cytoplasmic, putative, expressed K01869: LARS, leucyl-tRNA synthetase
4 Sobic.004G239700 - -
5 Sobic.005G205200 - -
6 Sobic.008G167600 VTC2, putative, expressed -
7 Sobic.001G052600 riboflavin biosynthesis protein-related, putative, expressed -
8 Sobic.002G213300 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
9 Sobic.002G043800 regulator of chromosome condensation/beta-lactamase-inhibitor protein II, putative, expressed -
10 Sobic.006G257800 actin-6, putative, expressed K16616: actin-related protein 8, plant
11 Sobic.003G301500 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K17623: PUDP, pseudouridine 5'-phosphatase
12 Sobic.006G234601 - -
13 Sobic.002G243800 BPI/LBP family protein At3g20270 precursor, putative, expressed -
14 Sobic.002G296500 dihydroneopterin aldolase, putative, expressed K01633: 7,8-dihydroneopterin aldolase/epimerase/oxygenase
15 Sobic.002G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
16 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
17 Sobic.006G051800 calmodulin-binding transcription activator 4, putative, expressed -
18 Sobic.004G189200 OsFBK9 - F-box domain and kelch repeat containing protein, expressed -
19 Sobic.010G150100 expressed protein -
20 Sobic.003G162400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic003G348000 Sobic003G348000 Sobic003G227501 Sobic003G227501 Sobic003G348000--Sobic003G227501 Sobic004G154532 Sobic004G154532 Sobic003G348000--Sobic004G154532 Sobic004G276900 Sobic004G276900 Sobic003G348000--Sobic004G276900 Sobic004G239700 Sobic004G239700 Sobic003G348000--Sobic004G239700 Sobic005G205200 Sobic005G205200 Sobic003G348000--Sobic005G205200 Sobic008G167600 Sobic008G167600 Sobic003G348000--Sobic008G167600 Sobic001G052600 Sobic001G052600 Sobic003G348000--Sobic001G052600 Sobic002G213300 Sobic002G213300 Sobic003G348000--Sobic002G213300 Sobic002G043800 Sobic002G043800 Sobic003G348000--Sobic002G043800 Sobic003G227501--Sobic004G154532 Sobic006G036700 Sobic006G036700 Sobic003G227501--Sobic006G036700 Sobic004G154466 Sobic004G154466 Sobic003G227501--Sobic004G154466 Sobic003G227501--Sobic003G348000 Sobic006G035400 Sobic006G035400 Sobic003G227501--Sobic006G035400 Sobic002G171101 Sobic002G171101 Sobic003G227501--Sobic002G171101 Sobic004G102750 Sobic004G102750 Sobic003G227501--Sobic004G102750 Sobic010G145500 Sobic010G145500 Sobic003G227501--Sobic010G145500 Sobic003G227501--Sobic005G205200 Sobic004G154532--Sobic003G227501 Sobic004G154532--Sobic004G154466 Sobic004G154532--Sobic002G171101 Sobic004G154532--Sobic006G036700 Sobic009G007200 Sobic009G007200 Sobic004G154532--Sobic009G007200 Sobic004G092350 Sobic004G092350 Sobic004G154532--Sobic004G092350 Sobic004G154532--Sobic003G348000 Sobic005G077200 Sobic005G077200 Sobic004G154532--Sobic005G077200 Sobic002G153200 Sobic002G153200 Sobic004G154532--Sobic002G153200 Sobic004G276900--Sobic003G348000 Sobic005G201000 Sobic005G201000 Sobic004G276900--Sobic005G201000 Sobic003G029500 Sobic003G029500 Sobic004G276900--Sobic003G029500 Sobic006G051800 Sobic006G051800 Sobic004G276900--Sobic006G051800 Sobic009G040400 Sobic009G040400 Sobic004G276900--Sobic009G040400 Sobic005G132000 Sobic005G132000 Sobic004G276900--Sobic005G132000 Sobic010G092350 Sobic010G092350 Sobic004G276900--Sobic010G092350 Sobic004G267900 Sobic004G267900 Sobic004G276900--Sobic004G267900 Sobic006G041000 Sobic006G041000 Sobic004G276900--Sobic006G041000 Sobic002G379750 Sobic002G379750 Sobic004G239700--Sobic002G379750 Sobic004G239700--Sobic010G092350 Sobic006G234601 Sobic006G234601 Sobic004G239700--Sobic006G234601 Sobic004G239700--Sobic006G051800 Sobic004G239700--Sobic003G348000 Sobic004G006800 Sobic004G006800 Sobic004G239700--Sobic004G006800 Sobic002G124600 Sobic002G124600 Sobic004G239700--Sobic002G124600 Sobic001G062300 Sobic001G062300 Sobic004G239700--Sobic001G062300 Sobic006G257800 Sobic006G257800 Sobic004G239700--Sobic006G257800 Sobic005G208200 Sobic005G208200 Sobic005G205200--Sobic005G208200 Sobic005G223600 Sobic005G223600 Sobic005G205200--Sobic005G223600 Sobic005G223925 Sobic005G223925 Sobic005G205200--Sobic005G223925 Sobic010G024200 Sobic010G024200 Sobic005G205200--Sobic010G024200 Sobic005G221900 Sobic005G221900 Sobic005G205200--Sobic005G221900 Sobic008G003800 Sobic008G003800 Sobic005G205200--Sobic008G003800 Sobic005G205200--Sobic006G036700 Sobic005G205200--Sobic003G348000 Sobic010G060800 Sobic010G060800 Sobic005G205200--Sobic010G060800 Sobic008G167600--Sobic006G257800 Sobic004G151300 Sobic004G151300 Sobic008G167600--Sobic004G151300 Sobic002G291800 Sobic002G291800 Sobic008G167600--Sobic002G291800 Sobic004G312600 Sobic004G312600 Sobic008G167600--Sobic004G312600 Sobic004G127800 Sobic004G127800 Sobic008G167600--Sobic004G127800 Sobic002G293500 Sobic002G293500 Sobic008G167600--Sobic002G293500 Sobic002G081400 Sobic002G081400 Sobic008G167600--Sobic002G081400 Sobic006G090100 Sobic006G090100 Sobic008G167600--Sobic006G090100 Sobic001G333800 Sobic001G333800 Sobic008G167600--Sobic001G333800 Sobic001G052600--Sobic002G291800 Sobic001G052600--Sobic009G040400 Sobic004G323400 Sobic004G323400 Sobic001G052600--Sobic004G323400 Sobic010G223200 Sobic010G223200 Sobic001G052600--Sobic010G223200 Sobic001G052600--Sobic005G132000 Sobic001G052600--Sobic008G167600 Sobic004G047300 Sobic004G047300 Sobic001G052600--Sobic004G047300 Sobic001G052600--Sobic003G348000 Sobic003G440300 Sobic003G440300 Sobic001G052600--Sobic003G440300 Sobic004G001500 Sobic004G001500 Sobic002G213300--Sobic004G001500 Sobic001G534700 Sobic001G534700 Sobic002G213300--Sobic001G534700 Sobic009G074400 Sobic009G074400 Sobic002G213300--Sobic009G074400 Sobic004G356700 Sobic004G356700 Sobic002G213300--Sobic004G356700 Sobic001G370900 Sobic001G370900 Sobic002G213300--Sobic001G370900 Sobic001G230000 Sobic001G230000 Sobic002G213300--Sobic001G230000 Sobic008G001200 Sobic008G001200 Sobic002G213300--Sobic008G001200 Sobic003G198800 Sobic003G198800 Sobic002G213300--Sobic003G198800 Sobic003G155100 Sobic003G155100 Sobic002G213300--Sobic003G155100 Sobic010G150100 Sobic010G150100 Sobic002G043800--Sobic010G150100 Sobic003G107500 Sobic003G107500 Sobic002G043800--Sobic003G107500 Sobic004G146600 Sobic004G146600 Sobic002G043800--Sobic004G146600 Sobic002G043800--Sobic008G167600 Sobic002G043800--Sobic004G151300 Sobic003G150500 Sobic003G150500 Sobic002G043800--Sobic003G150500 Sobic002G043800--Sobic004G312600 Sobic003G271400 Sobic003G271400 Sobic002G043800--Sobic003G271400 Sobic002G295100 Sobic002G295100 Sobic002G043800--Sobic002G295100
Octagon: transcription factors


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