Gene annotation
Transcriptome id Sobic.001G052600.3,Sobic.001G052600.2,Sobic.001G052600.1
Synonym
Functional annotation riboflavin biosynthesis protein-related, putative, expressed
UniProt A0A1B6QHG6 , A0A1Z5S4H5 , A0A1Z5S4Z9
Pfam PF06574
Panther DB PTHR12714 PTHR12714:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009231; riboflavin biosynthetic process GO:0003919FMN adenylyltransferase activity


Orthologs (automatic annotation)
TAIR AT5G23330 : Nucleotidylyl transferase superfamily protein
RAP-DB (Rice) LOC_Os03g58710.2,LOC_Os03g58710.1 : riboflavin biosynthesis protein-related, putative, expressed
MaizeGDB (Corn) Zm00025a008601
Brachypodium -
Barley HORVU5Hr1G057950.2 , HORVU1Hr1G045880.1 , HORVU5Hr1G057950.5 , HORVU5Hr1G057950.7 , HORVU5Hr1G057950.6 , HORVU5Hr1G057950.1 , HORVU5Hr1G057950.3 , HORVU5Hr1G057950.9 , HORVU5Hr1G057950.8 , HORVU5Hr1G057950.4
Wheat TraesCS5D02G200300 , TraesCS5D02G200300 , TraesCS5B02G192600 , TraesCS5B02G192600 , TraesCS5A02G190600 , TraesCS5A02G190600
Populus -


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cDNA sequences
Sobic.001G052600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G291800 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
2 Sobic.009G040400 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
3 Sobic.004G323400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine esterase family protein, putative, expressed -
4 Sobic.010G223200 OsFtsH2 FtsH protease, homologue of AtFtsH2/8, expressed K03798: ftsH, cell division protease FtsH
5 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
6 Sobic.008G167600 VTC2, putative, expressed -
7 Sobic.004G047300 receptor-like protein kinase precursor, putative, expressed -
8 Sobic.003G348000 SAC3/GANP family protein, putative, expressed -
9 Sobic.003G440300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
11 Sobic.003G277400 violaxanthin de-epoxidase, putative, expressed -
12 Sobic.004G231900 ribonuclease protein, putative, expressed K18758: DIS3-like exonuclease 2
13 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
14 Sobic.002G383600 zinc finger, C3HC4 type domain containing protein, expressed K12169: KPC1, Kip1 ubiquitination-promoting complex protein 1
15 Sobic.002G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
16 Sobic.009G245000 Glucose-1-phosphate adenylyltransferase large subunit(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
17 Sobic.003G162400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
19 Sobic.003G425300 Phycoerythrobilin ferredoxin oxidoreductase(PubMedID : 24906815)@phycoerythrobilin ferredoxin oxidoreductase, putative, expressed K08101: phytochromobilin:ferredoxin oxidoreductase
20 Sobic.009G259100 CCT motif family protein, expressed -


Gene co-expression network
sample Sobic001G052600 Sobic001G052600 Sobic002G291800 Sobic002G291800 Sobic001G052600--Sobic002G291800 Sobic009G040400 Sobic009G040400 Sobic001G052600--Sobic009G040400 Sobic004G323400 Sobic004G323400 Sobic001G052600--Sobic004G323400 Sobic010G223200 Sobic010G223200 Sobic001G052600--Sobic010G223200 Sobic005G132000 Sobic005G132000 Sobic001G052600--Sobic005G132000 Sobic008G167600 Sobic008G167600 Sobic001G052600--Sobic008G167600 Sobic004G047300 Sobic004G047300 Sobic001G052600--Sobic004G047300 Sobic003G348000 Sobic003G348000 Sobic001G052600--Sobic003G348000 Sobic003G440300 Sobic003G440300 Sobic001G052600--Sobic003G440300 Sobic002G291800--Sobic010G223200 Sobic002G291800--Sobic008G167600 Sobic003G162400 Sobic003G162400 Sobic002G291800--Sobic003G162400 Sobic006G235300 Sobic006G235300 Sobic002G291800--Sobic006G235300 Sobic002G291800--Sobic003G440300 Sobic004G127800 Sobic004G127800 Sobic002G291800--Sobic004G127800 Sobic004G190100 Sobic004G190100 Sobic002G291800--Sobic004G190100 Sobic002G275100 Sobic002G275100 Sobic002G291800--Sobic002G275100 Sobic001G112900 Sobic001G112900 Sobic002G291800--Sobic001G112900 Sobic007G010800 Sobic007G010800 Sobic009G040400--Sobic007G010800 Sobic009G040400--Sobic005G132000 Sobic003G105900 Sobic003G105900 Sobic009G040400--Sobic003G105900 Sobic005G201000 Sobic005G201000 Sobic009G040400--Sobic005G201000 Sobic003G029500 Sobic003G029500 Sobic009G040400--Sobic003G029500 Sobic010G092350 Sobic010G092350 Sobic009G040400--Sobic010G092350 Sobic002G275200 Sobic002G275200 Sobic009G040400--Sobic002G275200 Sobic002G356900 Sobic002G356900 Sobic009G040400--Sobic002G356900 Sobic002G138100 Sobic002G138100 Sobic009G040400--Sobic002G138100 Sobic002G417300 Sobic002G417300 Sobic004G323400--Sobic002G417300 Sobic002G295100 Sobic002G295100 Sobic004G323400--Sobic002G295100 Sobic003G188200 Sobic003G188200 Sobic004G323400--Sobic003G188200 Sobic001G104900 Sobic001G104900 Sobic004G323400--Sobic001G104900 Sobic004G323400--Sobic003G440300 Sobic003G425300 Sobic003G425300 Sobic004G323400--Sobic003G425300 Sobic006G041000 Sobic006G041000 Sobic004G323400--Sobic006G041000 Sobic004G282900 Sobic004G282900 Sobic004G323400--Sobic004G282900 Sobic004G323400--Sobic002G291800 Sobic002G060800 Sobic002G060800 Sobic010G223200--Sobic002G060800 Sobic010G223200--Sobic002G291800 Sobic007G006200 Sobic007G006200 Sobic010G223200--Sobic007G006200 Sobic002G351200 Sobic002G351200 Sobic010G223200--Sobic002G351200 Sobic004G271600 Sobic004G271600 Sobic010G223200--Sobic004G271600 Sobic004G317700 Sobic004G317700 Sobic010G223200--Sobic004G317700 Sobic010G223200--Sobic002G275100 Sobic010G207100 Sobic010G207100 Sobic010G223200--Sobic010G207100 Sobic002G132400 Sobic002G132400 Sobic010G223200--Sobic002G132400 Sobic005G132000--Sobic003G029500 Sobic005G132000--Sobic005G201000 Sobic009G259100 Sobic009G259100 Sobic005G132000--Sobic009G259100 Sobic005G132000--Sobic009G040400 Sobic005G132000--Sobic007G010800 Sobic007G146400 Sobic007G146400 Sobic005G132000--Sobic007G146400 Sobic010G132600 Sobic010G132600 Sobic005G132000--Sobic010G132600 Sobic005G132000--Sobic002G295100 Sobic003G003450 Sobic003G003450 Sobic005G132000--Sobic003G003450 Sobic006G257800 Sobic006G257800 Sobic008G167600--Sobic006G257800 Sobic004G151300 Sobic004G151300 Sobic008G167600--Sobic004G151300 Sobic008G167600--Sobic002G291800 Sobic004G312600 Sobic004G312600 Sobic008G167600--Sobic004G312600 Sobic008G167600--Sobic004G127800 Sobic002G293500 Sobic002G293500 Sobic008G167600--Sobic002G293500 Sobic002G081400 Sobic002G081400 Sobic008G167600--Sobic002G081400 Sobic006G090100 Sobic006G090100 Sobic008G167600--Sobic006G090100 Sobic001G333800 Sobic001G333800 Sobic008G167600--Sobic001G333800 Sobic004G047300--Sobic002G291800 Sobic004G047300--Sobic001G112900 Sobic008G002400 Sobic008G002400 Sobic004G047300--Sobic008G002400 Sobic004G047300--Sobic003G162400 Sobic004G047300--Sobic010G223200 Sobic004G217500 Sobic004G217500 Sobic004G047300--Sobic004G217500 Sobic005G002400 Sobic005G002400 Sobic004G047300--Sobic005G002400 Sobic010G113200 Sobic010G113200 Sobic004G047300--Sobic010G113200 Sobic004G047300--Sobic002G293500 Sobic003G227501 Sobic003G227501 Sobic003G348000--Sobic003G227501 Sobic004G154532 Sobic004G154532 Sobic003G348000--Sobic004G154532 Sobic004G276900 Sobic004G276900 Sobic003G348000--Sobic004G276900 Sobic004G239700 Sobic004G239700 Sobic003G348000--Sobic004G239700 Sobic005G205200 Sobic005G205200 Sobic003G348000--Sobic005G205200 Sobic003G348000--Sobic008G167600 Sobic003G348000--Sobic001G052600 Sobic002G213300 Sobic002G213300 Sobic003G348000--Sobic002G213300 Sobic002G043800 Sobic002G043800 Sobic003G348000--Sobic002G043800 Sobic003G440300--Sobic004G190100 Sobic003G440300--Sobic003G162400 Sobic003G326000 Sobic003G326000 Sobic003G440300--Sobic003G326000 Sobic003G440300--Sobic003G188200 Sobic003G440300--Sobic002G291800 Sobic003G440300--Sobic001G112900 Sobic003G440300--Sobic005G002400 Sobic006G154800 Sobic006G154800 Sobic003G440300--Sobic006G154800 Sobic003G440300--Sobic004G323400
Octagon: transcription factors


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