Gene annotation
Transcriptome id Sobic.004G276900.2
Synonym
Functional annotation leucyl-tRNA synthetase, cytoplasmic, putative, expressed
UniProt A0A1Z5RPC8
Pfam PF09334 PF00133
Panther DB PTHR11946 PTHR11946:SF51
NCBI CDD -
KEGG Orthology K01869; LARS, leucyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT1G09620 : ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases
RAP-DB (Rice) LOC_Os09g32650.1 : leucyl-tRNA synthetase, cytoplasmic, putative, expressed
MaizeGDB (Corn) Zm00025a009401 , Zm00025a013695
Brachypodium -
Barley HORVU2Hr1G026750.4 , HORVU2Hr1G026750.5 , HORVU2Hr1G026750.6 , HORVU2Hr1G026750.7 , HORVU2Hr1G026750.8 , HORVU2Hr1G026750.9 , HORVU2Hr1G026750.10 , HORVU3Hr1G032730.2 , HORVU3Hr1G032730.3 , HORVU3Hr1G032730.1 , HORVU3Hr1G032730.4 , HORVU3Hr1G032730.5
Wheat TraesCS3B02G194400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G348000 SAC3/GANP family protein, putative, expressed -
2 Sobic.005G201000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
3 Sobic.003G029500 zinc finger, C3HC4 type family protein, expressed -
4 Sobic.006G051800 calmodulin-binding transcription activator 4, putative, expressed -
5 Sobic.009G040400 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
6 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
7 Sobic.010G092350 - -
8 Sobic.004G267900 expressed protein K10756: replication factor C subunit 3/5
9 Sobic.006G041000 "Oxidoreductase, zinc-binding dehydrogenase family protein"("PubMedID : 26759170,PubMedID : 24597475")@dehydrogenase, putative, expressed -
10 Sobic.002G275200 PPR repeat containing protein, expressed -
11 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
12 Sobic.005G038500 pentatricopeptide containing protein, putative, expressed -
13 Sobic.006G257800 actin-6, putative, expressed K16616: actin-related protein 8, plant
14 Sobic.003G105900 expressed protein -
15 Sobic.002G291800 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
16 Sobic.002G383600 zinc finger, C3HC4 type domain containing protein, expressed K12169: KPC1, Kip1 ubiquitination-promoting complex protein 1
17 Sobic.007G146400 chaperonin Cpn60/TCP-1, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
18 Sobic.009G259100 CCT motif family protein, expressed -
19 Sobic.002G169400 Leucine Rich Repeat family protein, expressed -
20 Sobic.002G060800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf45, putative, expressed -


Gene co-expression network
sample Sobic004G276900 Sobic004G276900 Sobic003G348000 Sobic003G348000 Sobic004G276900--Sobic003G348000 Sobic005G201000 Sobic005G201000 Sobic004G276900--Sobic005G201000 Sobic003G029500 Sobic003G029500 Sobic004G276900--Sobic003G029500 Sobic006G051800 Sobic006G051800 Sobic004G276900--Sobic006G051800 Sobic009G040400 Sobic009G040400 Sobic004G276900--Sobic009G040400 Sobic005G132000 Sobic005G132000 Sobic004G276900--Sobic005G132000 Sobic010G092350 Sobic010G092350 Sobic004G276900--Sobic010G092350 Sobic004G267900 Sobic004G267900 Sobic004G276900--Sobic004G267900 Sobic006G041000 Sobic006G041000 Sobic004G276900--Sobic006G041000 Sobic003G227501 Sobic003G227501 Sobic003G348000--Sobic003G227501 Sobic004G154532 Sobic004G154532 Sobic003G348000--Sobic004G154532 Sobic003G348000--Sobic004G276900 Sobic004G239700 Sobic004G239700 Sobic003G348000--Sobic004G239700 Sobic005G205200 Sobic005G205200 Sobic003G348000--Sobic005G205200 Sobic008G167600 Sobic008G167600 Sobic003G348000--Sobic008G167600 Sobic001G052600 Sobic001G052600 Sobic003G348000--Sobic001G052600 Sobic002G213300 Sobic002G213300 Sobic003G348000--Sobic002G213300 Sobic002G043800 Sobic002G043800 Sobic003G348000--Sobic002G043800 Sobic005G201000--Sobic003G029500 Sobic005G201000--Sobic005G132000 Sobic005G201000--Sobic009G040400 Sobic005G201000--Sobic006G051800 Sobic007G010800 Sobic007G010800 Sobic005G201000--Sobic007G010800 Sobic010G150100 Sobic010G150100 Sobic005G201000--Sobic010G150100 Sobic005G201000--Sobic010G092350 Sobic003G057233 Sobic003G057233 Sobic005G201000--Sobic003G057233 Sobic001G298900 Sobic001G298900 Sobic005G201000--Sobic001G298900 Sobic003G029500--Sobic005G201000 Sobic003G029500--Sobic005G132000 Sobic003G029500--Sobic006G051800 Sobic003G029500--Sobic009G040400 Sobic003G003450 Sobic003G003450 Sobic003G029500--Sobic003G003450 Sobic004G312600 Sobic004G312600 Sobic003G029500--Sobic004G312600 Sobic003G029500--Sobic010G092350 Sobic005G106600 Sobic005G106600 Sobic003G029500--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic003G029500--Sobic003G220100 Sobic006G051800--Sobic003G029500 Sobic009G074400 Sobic009G074400 Sobic006G051800--Sobic009G074400 Sobic004G231900 Sobic004G231900 Sobic006G051800--Sobic004G231900 Sobic002G383600 Sobic002G383600 Sobic006G051800--Sobic002G383600 Sobic006G219600 Sobic006G219600 Sobic006G051800--Sobic006G219600 Sobic004G189200 Sobic004G189200 Sobic006G051800--Sobic004G189200 Sobic006G257800 Sobic006G257800 Sobic006G051800--Sobic006G257800 Sobic006G051800--Sobic005G201000 Sobic006G051800--Sobic008G167600 Sobic009G040400--Sobic007G010800 Sobic009G040400--Sobic005G132000 Sobic003G105900 Sobic003G105900 Sobic009G040400--Sobic003G105900 Sobic009G040400--Sobic005G201000 Sobic009G040400--Sobic003G029500 Sobic009G040400--Sobic010G092350 Sobic002G275200 Sobic002G275200 Sobic009G040400--Sobic002G275200 Sobic002G356900 Sobic002G356900 Sobic009G040400--Sobic002G356900 Sobic002G138100 Sobic002G138100 Sobic009G040400--Sobic002G138100 Sobic005G132000--Sobic003G029500 Sobic005G132000--Sobic005G201000 Sobic009G259100 Sobic009G259100 Sobic005G132000--Sobic009G259100 Sobic005G132000--Sobic009G040400 Sobic005G132000--Sobic007G010800 Sobic007G146400 Sobic007G146400 Sobic005G132000--Sobic007G146400 Sobic010G132600 Sobic010G132600 Sobic005G132000--Sobic010G132600 Sobic002G295100 Sobic002G295100 Sobic005G132000--Sobic002G295100 Sobic005G132000--Sobic003G003450 Sobic010G223200 Sobic010G223200 Sobic010G092350--Sobic010G223200 Sobic010G092350--Sobic009G040400 Sobic010G207100 Sobic010G207100 Sobic010G092350--Sobic010G207100 Sobic004G300100 Sobic004G300100 Sobic010G092350--Sobic004G300100 Sobic010G092350--Sobic002G356900 Sobic004G271600 Sobic004G271600 Sobic010G092350--Sobic004G271600 Sobic010G092350--Sobic003G029500 Sobic002G060800 Sobic002G060800 Sobic010G092350--Sobic002G060800 Sobic002G291800 Sobic002G291800 Sobic010G092350--Sobic002G291800 Sobic002G105700 Sobic002G105700 Sobic004G267900--Sobic002G105700 Sobic004G243600 Sobic004G243600 Sobic004G267900--Sobic004G243600 Sobic003G186900 Sobic003G186900 Sobic004G267900--Sobic003G186900 Sobic004G267900--Sobic010G132600 Sobic010G038100 Sobic010G038100 Sobic004G267900--Sobic010G038100 Sobic008G054000 Sobic008G054000 Sobic004G267900--Sobic008G054000 Sobic003G101700 Sobic003G101700 Sobic004G267900--Sobic003G101700 Sobic010G135250 Sobic010G135250 Sobic004G267900--Sobic010G135250 Sobic006G119400 Sobic006G119400 Sobic004G267900--Sobic006G119400 Sobic006G041000--Sobic009G259100 Sobic004G190100 Sobic004G190100 Sobic006G041000--Sobic004G190100 Sobic001G112900 Sobic001G112900 Sobic006G041000--Sobic001G112900 Sobic003G440300 Sobic003G440300 Sobic006G041000--Sobic003G440300 Sobic004G267700 Sobic004G267700 Sobic006G041000--Sobic004G267700 Sobic002G351200 Sobic002G351200 Sobic006G041000--Sobic002G351200 Sobic002G213400 Sobic002G213400 Sobic006G041000--Sobic002G213400 Sobic007G121300 Sobic007G121300 Sobic006G041000--Sobic007G121300 Sobic003G304300 Sobic003G304300 Sobic006G041000--Sobic003G304300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.