Gene annotation
Transcriptome id Sobic.004G267900.1
Synonym RFC3, EMB2775, EMB251, EMB161
Functional annotation expressed protein
UniProt C5Y0B5
Pfam PF08542 PF13177
Panther DB PTHR11669 PTHR11669:SF25
NCBI CDD KOG2035; Replication factor C, subunit RFC3
KEGG Orthology K10756; replication factor C subunit 3/5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G27740 : ATPase family associated with various cellular activities (AAA)
RAP-DB (Rice) LOC_Os02g47605.1 : expressed protein
MaizeGDB (Corn) Zm00025a032422
Brachypodium KQK00936
Barley HORVU6Hr1G068810.10 , HORVU6Hr1G068850.5 , HORVU6Hr1G068850.2 , HORVU6Hr1G068850.9 , HORVU6Hr1G068850.8 , HORVU6Hr1G068810.9 , HORVU6Hr1G068810.8 , HORVU6Hr1G068810.1 , HORVU6Hr1G068810.3 , HORVU6Hr1G068810.2 , HORVU6Hr1G068810.5 , HORVU6Hr1G068810.4 , HORVU6Hr1G068810.7 , HORVU6Hr1G068810.6 , HORVU6Hr1G068850.3 , HORVU6Hr1G068810.11 , HORVU6Hr1G068850.11 , HORVU6Hr1G068850.10
Wheat TraesCS6B02G299900 , TraesCS6D02G252500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G105700 protein binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
2 Sobic.004G243600 AAA-type ATPase family protein, putative, expressed -
3 Sobic.003G186900 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
4 Sobic.010G132600 selenoprotein O, putative, expressed -
5 Sobic.010G038100 OsFBDUF30 - F-box and DUF domain containing protein, expressed -
6 Sobic.008G054000 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
7 Sobic.003G101700 dnaJ domain containing protein, expressed -
8 Sobic.010G135250 - -
9 Sobic.006G119400 SWIM zinc finger family protein, putative, expressed -
10 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
11 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
12 Sobic.002G405200 AMP deaminase, putative, expressed K01488: add, adenosine deaminase
13 Sobic.004G276900 leucyl-tRNA synthetase, cytoplasmic, putative, expressed K01869: LARS, leucyl-tRNA synthetase
14 Sobic.010G183300 - -
15 Sobic.001G340000 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
16 Sobic.001G298900 agenet domain containing protein, putative, expressed -
17 Sobic.006G019300 F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed K04508: transducin (beta)-like 1
18 Sobic.009G185700 mutS domain V family protein, expressed K08741: DNA mismatch repair protein MSH5
19 Sobic.010G121100 NBS-LRR disease resistance protein, putative, expressed -
20 Sobic.001G518100 DNA-binding bromodomain-containing protein, putative, expressed K11723: bromodomain-containing protein 7


Gene co-expression network
sample Sobic004G267900 Sobic004G267900 Sobic002G105700 Sobic002G105700 Sobic004G267900--Sobic002G105700 Sobic004G243600 Sobic004G243600 Sobic004G267900--Sobic004G243600 Sobic003G186900 Sobic003G186900 Sobic004G267900--Sobic003G186900 Sobic010G132600 Sobic010G132600 Sobic004G267900--Sobic010G132600 Sobic010G038100 Sobic010G038100 Sobic004G267900--Sobic010G038100 Sobic008G054000 Sobic008G054000 Sobic004G267900--Sobic008G054000 Sobic003G101700 Sobic003G101700 Sobic004G267900--Sobic003G101700 Sobic010G135250 Sobic010G135250 Sobic004G267900--Sobic010G135250 Sobic006G119400 Sobic006G119400 Sobic004G267900--Sobic006G119400 Sobic002G105700--Sobic004G267900 Sobic002G105700--Sobic004G243600 Sobic002G405200 Sobic002G405200 Sobic002G105700--Sobic002G405200 Sobic010G057500 Sobic010G057500 Sobic002G105700--Sobic010G057500 Sobic002G374300 Sobic002G374300 Sobic002G105700--Sobic002G374300 Sobic010G027900 Sobic010G027900 Sobic002G105700--Sobic010G027900 Sobic006G019300 Sobic006G019300 Sobic002G105700--Sobic006G019300 Sobic007G018400 Sobic007G018400 Sobic002G105700--Sobic007G018400 Sobic007G103500 Sobic007G103500 Sobic002G105700--Sobic007G103500 Sobic004G243600--Sobic002G374300 Sobic004G243600--Sobic008G054000 Sobic004G243600--Sobic010G057500 Sobic004G243600--Sobic006G019300 Sobic008G002300 Sobic008G002300 Sobic004G243600--Sobic008G002300 Sobic010G183300 Sobic010G183300 Sobic004G243600--Sobic010G183300 Sobic004G344000 Sobic004G344000 Sobic004G243600--Sobic004G344000 Sobic001G178300 Sobic001G178300 Sobic004G243600--Sobic001G178300 Sobic004G243600--Sobic002G105700 Sobic003G166200 Sobic003G166200 Sobic003G186900--Sobic003G166200 Sobic003G264800 Sobic003G264800 Sobic003G186900--Sobic003G264800 Sobic005G106600 Sobic005G106600 Sobic003G186900--Sobic005G106600 Sobic006G219600 Sobic006G219600 Sobic003G186900--Sobic006G219600 Sobic002G072400 Sobic002G072400 Sobic003G186900--Sobic002G072400 Sobic004G337400 Sobic004G337400 Sobic003G186900--Sobic004G337400 Sobic010G171600 Sobic010G171600 Sobic003G186900--Sobic010G171600 Sobic001G333800 Sobic001G333800 Sobic003G186900--Sobic001G333800 Sobic001G207800 Sobic001G207800 Sobic003G186900--Sobic001G207800 Sobic002G257750 Sobic002G257750 Sobic010G132600--Sobic002G257750 Sobic004G146600 Sobic004G146600 Sobic010G132600--Sobic004G146600 Sobic010G132600--Sobic005G106600 Sobic005G132000 Sobic005G132000 Sobic010G132600--Sobic005G132000 Sobic004G356700 Sobic004G356700 Sobic010G132600--Sobic004G356700 Sobic003G057233 Sobic003G057233 Sobic010G132600--Sobic003G057233 Sobic003G398700 Sobic003G398700 Sobic010G132600--Sobic003G398700 Sobic003G029500 Sobic003G029500 Sobic010G132600--Sobic003G029500 Sobic004G231900 Sobic004G231900 Sobic010G132600--Sobic004G231900 Sobic005G200900 Sobic005G200900 Sobic010G038100--Sobic005G200900 Sobic010G026600 Sobic010G026600 Sobic010G038100--Sobic010G026600 Sobic001G440100 Sobic001G440100 Sobic010G038100--Sobic001G440100 Sobic004G235300 Sobic004G235300 Sobic010G038100--Sobic004G235300 Sobic006G080400 Sobic006G080400 Sobic010G038100--Sobic006G080400 Sobic008G002500 Sobic008G002500 Sobic010G038100--Sobic008G002500 Sobic001G501800 Sobic001G501800 Sobic010G038100--Sobic001G501800 Sobic010G038100--Sobic003G101700 Sobic009G185700 Sobic009G185700 Sobic010G038100--Sobic009G185700 Sobic004G244900 Sobic004G244900 Sobic008G054000--Sobic004G244900 Sobic008G054000--Sobic004G356700 Sobic004G334300 Sobic004G334300 Sobic008G054000--Sobic004G334300 Sobic008G054000--Sobic002G257750 Sobic008G044100 Sobic008G044100 Sobic008G054000--Sobic008G044100 Sobic008G054000--Sobic003G398700 Sobic008G054000--Sobic003G101700 Sobic002G316600 Sobic002G316600 Sobic008G054000--Sobic002G316600 Sobic002G344000 Sobic002G344000 Sobic008G054000--Sobic002G344000 Sobic003G101700--Sobic002G316600 Sobic010G079500 Sobic010G079500 Sobic003G101700--Sobic010G079500 Sobic002G308700 Sobic002G308700 Sobic003G101700--Sobic002G308700 Sobic003G260400 Sobic003G260400 Sobic003G101700--Sobic003G260400 Sobic001G298900 Sobic001G298900 Sobic003G101700--Sobic001G298900 Sobic001G230000 Sobic001G230000 Sobic003G101700--Sobic001G230000 Sobic003G101700--Sobic008G054000 Sobic004G134200 Sobic004G134200 Sobic003G101700--Sobic004G134200 Sobic003G101700--Sobic004G334300 Sobic010G137100 Sobic010G137100 Sobic010G135250--Sobic010G137100 Sobic005G100250 Sobic005G100250 Sobic010G135250--Sobic005G100250 Sobic003G251100 Sobic003G251100 Sobic010G135250--Sobic003G251100 Sobic010G132900 Sobic010G132900 Sobic010G135250--Sobic010G132900 Sobic010G163400 Sobic010G163400 Sobic010G135250--Sobic010G163400 Sobic003G207500 Sobic003G207500 Sobic010G135250--Sobic003G207500 Sobic010G102366 Sobic010G102366 Sobic010G135250--Sobic010G102366 Sobic007G163001 Sobic007G163001 Sobic010G135250--Sobic007G163001 Sobic008G111200 Sobic008G111200 Sobic010G135250--Sobic008G111200 Sobic006G119400--Sobic010G079500 Sobic005G142800 Sobic005G142800 Sobic006G119400--Sobic005G142800 Sobic004G107200 Sobic004G107200 Sobic006G119400--Sobic004G107200 Sobic010G053600 Sobic010G053600 Sobic006G119400--Sobic010G053600 Sobic002G043100 Sobic002G043100 Sobic006G119400--Sobic002G043100 Sobic006G049900 Sobic006G049900 Sobic006G119400--Sobic006G049900 Sobic008G132900 Sobic008G132900 Sobic006G119400--Sobic008G132900 Sobic008G016300 Sobic008G016300 Sobic006G119400--Sobic008G016300 Sobic006G119400--Sobic001G298900
Octagon: transcription factors


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