Gene annotation
Transcriptome id Sobic.003G373800.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6Q789
Pfam -
Panther DB PTHR31509 PTHR31509:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G22030 : -
RAP-DB (Rice) LOC_Os01g65420.1 : expressed protein
MaizeGDB (Corn) Zm00025a039533 , Zm00025a026621
Brachypodium KQJ99863 , KQK10846
Barley HORVU3Hr1G082030.2 , HORVU3Hr1G082030.1 , HORVU7Hr1G077680.1 , HORVU7Hr1G077680.3 , HORVU7Hr1G077680.2
Wheat TraesCS3A02G385700 , TraesCS7D02G321400 , TraesCS7A02G324900 , TraesCS7B02G225400 , TraesCS3D02G378800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G337800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
2 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
3 Sobic.009G030200 homeobox protein knotted-1-like 6, putative, expressed -
4 Sobic.004G303600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.008G000500 exo70 exocyst complex subunit domain containing protein, expressed -
6 Sobic.010G071700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
7 Sobic.009G188100 serine/threonine-protein kinase receptor precursor, putative, expressed -
8 Sobic.003G278700 heavy metal-associated domain containing protein, expressed -
9 Sobic.003G129400 glycosyltransferase family 43 protein, putative, expressed K00735: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
10 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
11 Sobic.008G159100 similar to Calmodulin-2(PubMedID : 29862293)@Ca2+ sensors group(PubMedID : 30367619)@OsCML5 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
12 Sobic.002G210300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hypro1, putative, expressed -
13 Sobic.002G325900 aspartic proteinase nepenthesin precursor, putative, expressed -
14 Sobic.009G208800 hydrolase, acting on carbon-nitrogen, putative, expressed -
15 Sobic.001G050800 galactosyltransferase family protein, putative, expressed -
16 Sobic.003G338900 expressed protein -
17 Sobic.004G264500 DUF617 domain containing protein, expressed -
18 Sobic.001G460300 expressed protein -
19 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
20 Sobic.007G057100 expressed protein -


Gene co-expression network
sample Sobic003G373800 Sobic003G373800 Sobic002G337800 Sobic002G337800 Sobic003G373800--Sobic002G337800 Sobic005G231700 Sobic005G231700 Sobic003G373800--Sobic005G231700 Sobic009G030200 Sobic009G030200 Sobic003G373800--Sobic009G030200 Sobic004G303600 Sobic004G303600 Sobic003G373800--Sobic004G303600 Sobic008G000500 Sobic008G000500 Sobic003G373800--Sobic008G000500 Sobic010G071700 Sobic010G071700 Sobic003G373800--Sobic010G071700 Sobic009G188100 Sobic009G188100 Sobic003G373800--Sobic009G188100 Sobic003G278700 Sobic003G278700 Sobic003G373800--Sobic003G278700 Sobic003G129400 Sobic003G129400 Sobic003G373800--Sobic003G129400 Sobic002G337800--Sobic005G231700 Sobic008G159100 Sobic008G159100 Sobic002G337800--Sobic008G159100 Sobic006G087900 Sobic006G087900 Sobic002G337800--Sobic006G087900 Sobic001G063600 Sobic001G063600 Sobic002G337800--Sobic001G063600 Sobic007G057100 Sobic007G057100 Sobic002G337800--Sobic007G057100 Sobic001G051800 Sobic001G051800 Sobic002G337800--Sobic001G051800 Sobic002G210300 Sobic002G210300 Sobic002G337800--Sobic002G210300 Sobic002G337800--Sobic008G000500 Sobic005G121200 Sobic005G121200 Sobic002G337800--Sobic005G121200 Sobic005G231700--Sobic006G087900 Sobic005G231700--Sobic001G063600 Sobic002G325900 Sobic002G325900 Sobic005G231700--Sobic002G325900 Sobic003G296700 Sobic003G296700 Sobic005G231700--Sobic003G296700 Sobic010G080400 Sobic010G080400 Sobic005G231700--Sobic010G080400 Sobic009G208800 Sobic009G208800 Sobic005G231700--Sobic009G208800 Sobic005G231700--Sobic008G159100 Sobic005G231700--Sobic002G337800 Sobic004G025000 Sobic004G025000 Sobic005G231700--Sobic004G025000 Sobic001G050800 Sobic001G050800 Sobic009G030200--Sobic001G050800 Sobic001G157400 Sobic001G157400 Sobic009G030200--Sobic001G157400 Sobic009G030200--Sobic003G278700 Sobic009G030200--Sobic010G071700 Sobic009G030200--Sobic005G231700 Sobic003G227600 Sobic003G227600 Sobic009G030200--Sobic003G227600 Sobic003G342600 Sobic003G342600 Sobic009G030200--Sobic003G342600 Sobic009G159900 Sobic009G159900 Sobic009G030200--Sobic009G159900 Sobic006G032200 Sobic006G032200 Sobic009G030200--Sobic006G032200 Sobic004G303600--Sobic003G373800 Sobic004G264600 Sobic004G264600 Sobic004G303600--Sobic004G264600 Sobic004G261200 Sobic004G261200 Sobic004G303600--Sobic004G261200 Sobic010G008600 Sobic010G008600 Sobic004G303600--Sobic010G008600 Sobic004G303600--Sobic003G129400 Sobic001G396400 Sobic001G396400 Sobic004G303600--Sobic001G396400 Sobic004G303600--Sobic002G337800 Sobic001G080300 Sobic001G080300 Sobic004G303600--Sobic001G080300 Sobic004G303600--Sobic008G159100 Sobic008G000500--Sobic008G159100 Sobic004G264500 Sobic004G264500 Sobic008G000500--Sobic004G264500 Sobic008G000500--Sobic005G231700 Sobic008G000500--Sobic002G337800 Sobic001G235800 Sobic001G235800 Sobic008G000500--Sobic001G235800 Sobic001G444700 Sobic001G444700 Sobic008G000500--Sobic001G444700 Sobic008G000500--Sobic001G080300 Sobic008G000500--Sobic002G325900 Sobic004G245850 Sobic004G245850 Sobic008G000500--Sobic004G245850 Sobic010G071700--Sobic003G342600 Sobic003G141800 Sobic003G141800 Sobic010G071700--Sobic003G141800 Sobic010G071700--Sobic001G063600 Sobic009G170100 Sobic009G170100 Sobic010G071700--Sobic009G170100 Sobic010G071700--Sobic003G129400 Sobic010G071700--Sobic009G030200 Sobic010G071700--Sobic005G231700 Sobic010G265600 Sobic010G265600 Sobic010G071700--Sobic010G265600 Sobic010G071700--Sobic006G032200 Sobic009G188100--Sobic003G373800 Sobic003G198400 Sobic003G198400 Sobic009G188100--Sobic003G198400 Sobic001G460300 Sobic001G460300 Sobic009G188100--Sobic001G460300 Sobic009G188100--Sobic003G278700 Sobic009G188100--Sobic009G030200 Sobic009G188100--Sobic001G157400 Sobic004G257800 Sobic004G257800 Sobic009G188100--Sobic004G257800 Sobic005G060766 Sobic005G060766 Sobic009G188100--Sobic005G060766 Sobic001G450800 Sobic001G450800 Sobic009G188100--Sobic001G450800 Sobic009G099000 Sobic009G099000 Sobic003G278700--Sobic009G099000 Sobic003G278700--Sobic001G157400 Sobic003G278700--Sobic001G460300 Sobic003G278700--Sobic001G050800 Sobic003G278700--Sobic005G231700 Sobic003G278700--Sobic009G030200 Sobic010G272101 Sobic010G272101 Sobic003G278700--Sobic010G272101 Sobic003G278700--Sobic001G063600 Sobic003G278700--Sobic003G227600 Sobic003G129400--Sobic003G342600 Sobic003G129400--Sobic010G071700 Sobic003G129400--Sobic001G063600 Sobic001G379000 Sobic001G379000 Sobic003G129400--Sobic001G379000 Sobic007G180300 Sobic007G180300 Sobic003G129400--Sobic007G180300 Sobic003G129400--Sobic009G030200 Sobic003G129400--Sobic005G231700 Sobic002G185300 Sobic002G185300 Sobic003G129400--Sobic002G185300 Sobic001G403600 Sobic001G403600 Sobic003G129400--Sobic001G403600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.