Gene annotation
Transcriptome id Sobic.003G427400.1,Sobic.003G427400.2
Synonym Sb03g045950
Functional annotation signal recognition particle 54 kDa protein, putative, expressed
UniProt A0A1B6Q880
Pfam PF02492 PF02881 PF02978
Panther DB PTHR11564 PTHR11564:SF5
NCBI CDD KOG0780; Signal recognition particle, subunit Srp54
KEGG Orthology K03106; SRP54, signal recognition particle subunit SRP54
Gene Ontology GO:0006614; SRP-dependent cotranslational protein targeting to membrane GO:0005525GTP binding GO:00083127S RNA binding


Orthologs (automatic annotation)
TAIR AT1G48900 : Signal recognition particle, SRP54 subunit protein
RAP-DB (Rice) LOC_Os01g56600.1 : signal recognition particle 54 kDa protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G163033 - -
2 Sobic.003G076100 limonoid UDP-glucosyltransferase, putative, expressed -
3 Sobic.001G052500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
4 Sobic.007G122866 - -
5 Sobic.004G271100 expressed protein -
6 Sobic.001G349300 organic cation transporter-related, putative, expressed -
7 Sobic.006G205800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@plant protein of unknown function domain containing protein, expressed -
8 Sobic.003G314200 TKL_IRAK_DUF26-lc.7 - DUF26 kinases have homology to DUF26 containing loci, expressed -
9 Sobic.004G338200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsWAK24 - OsWAK receptor-like protein kinase, expressed -
10 Sobic.006G184700 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
11 Sobic.010G234100 - -
12 Sobic.002G311300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
13 Sobic.001G206600 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
14 Sobic.002G248201 - -
15 Sobic.007G149400 expressed protein -
16 Sobic.001G138700 - -
17 Sobic.007G159300 basic helix-loop-helix, putative, expressed -
18 Sobic.002G278400 - -
19 Sobic.006G174000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cis-zeatin O-glucosyltransferase, putative, expressed K13495: cis-zeatin O-glucosyltransferase
20 Sobic.002G242100 expressed protein -


Gene co-expression network
sample Sobic003G427400 Sobic003G427400 Sobic006G163033 Sobic006G163033 Sobic003G427400--Sobic006G163033 Sobic003G076100 Sobic003G076100 Sobic003G427400--Sobic003G076100 Sobic001G052500 Sobic001G052500 Sobic003G427400--Sobic001G052500 Sobic007G122866 Sobic007G122866 Sobic003G427400--Sobic007G122866 Sobic004G271100 Sobic004G271100 Sobic003G427400--Sobic004G271100 Sobic001G349300 Sobic001G349300 Sobic003G427400--Sobic001G349300 Sobic006G205800 Sobic006G205800 Sobic003G427400--Sobic006G205800 Sobic003G314200 Sobic003G314200 Sobic003G427400--Sobic003G314200 Sobic004G338200 Sobic004G338200 Sobic003G427400--Sobic004G338200 Sobic003G223600 Sobic003G223600 Sobic006G163033--Sobic003G223600 Sobic007G159300 Sobic007G159300 Sobic006G163033--Sobic007G159300 Sobic004G279900 Sobic004G279900 Sobic006G163033--Sobic004G279900 Sobic006G174000 Sobic006G174000 Sobic006G163033--Sobic006G174000 Sobic007G079500 Sobic007G079500 Sobic006G163033--Sobic007G079500 Sobic006G163033--Sobic007G122866 Sobic004G093300 Sobic004G093300 Sobic006G163033--Sobic004G093300 Sobic006G163033--Sobic006G205800 Sobic006G209200 Sobic006G209200 Sobic006G163033--Sobic006G209200 Sobic003G076100--Sobic007G122866 Sobic003G076100--Sobic007G159300 Sobic003G076100--Sobic001G052500 Sobic003G076100--Sobic004G271100 Sobic003G076100--Sobic006G163033 Sobic005G103800 Sobic005G103800 Sobic003G076100--Sobic005G103800 Sobic001G206600 Sobic001G206600 Sobic003G076100--Sobic001G206600 Sobic003G277850 Sobic003G277850 Sobic003G076100--Sobic003G277850 Sobic003G225000 Sobic003G225000 Sobic003G076100--Sobic003G225000 Sobic001G052500--Sobic007G122866 Sobic001G052500--Sobic003G076100 Sobic004G280000 Sobic004G280000 Sobic001G052500--Sobic004G280000 Sobic010G072200 Sobic010G072200 Sobic001G052500--Sobic010G072200 Sobic006G253700 Sobic006G253700 Sobic001G052500--Sobic006G253700 Sobic001G108800 Sobic001G108800 Sobic001G052500--Sobic001G108800 Sobic008G050500 Sobic008G050500 Sobic001G052500--Sobic008G050500 Sobic003G085750 Sobic003G085750 Sobic001G052500--Sobic003G085750 Sobic006G252532 Sobic006G252532 Sobic001G052500--Sobic006G252532 Sobic007G122866--Sobic001G052500 Sobic007G122866--Sobic003G076100 Sobic003G043550 Sobic003G043550 Sobic007G122866--Sobic003G043550 Sobic007G122866--Sobic004G279900 Sobic007G122866--Sobic006G163033 Sobic001G194401 Sobic001G194401 Sobic007G122866--Sobic001G194401 Sobic007G122866--Sobic003G277850 Sobic007G122866--Sobic006G253700 Sobic004G195500 Sobic004G195500 Sobic007G122866--Sobic004G195500 Sobic004G271100--Sobic003G076100 Sobic004G271100--Sobic007G122866 Sobic004G271100--Sobic006G163033 Sobic004G271100--Sobic007G159300 Sobic008G028900 Sobic008G028900 Sobic004G271100--Sobic008G028900 Sobic004G271100--Sobic006G252532 Sobic004G271100--Sobic003G427400 Sobic004G271100--Sobic003G225000 Sobic002G204800 Sobic002G204800 Sobic004G271100--Sobic002G204800 Sobic001G349300--Sobic006G163033 Sobic002G117300 Sobic002G117300 Sobic001G349300--Sobic002G117300 Sobic001G349300--Sobic003G427400 Sobic001G349300--Sobic001G052500 Sobic004G044700 Sobic004G044700 Sobic001G349300--Sobic004G044700 Sobic001G349300--Sobic007G079500 Sobic001G349300--Sobic003G223600 Sobic008G017400 Sobic008G017400 Sobic001G349300--Sobic008G017400 Sobic003G079466 Sobic003G079466 Sobic001G349300--Sobic003G079466 Sobic001G207301 Sobic001G207301 Sobic006G205800--Sobic001G207301 Sobic006G112000 Sobic006G112000 Sobic006G205800--Sobic006G112000 Sobic006G205800--Sobic003G314200 Sobic003G348900 Sobic003G348900 Sobic006G205800--Sobic003G348900 Sobic001G097800 Sobic001G097800 Sobic006G205800--Sobic001G097800 Sobic006G094800 Sobic006G094800 Sobic006G205800--Sobic006G094800 Sobic008G040800 Sobic008G040800 Sobic006G205800--Sobic008G040800 Sobic006G205800--Sobic007G159300 Sobic002G215866 Sobic002G215866 Sobic006G205800--Sobic002G215866 Sobic003G314200--Sobic008G040800 Sobic003G314200--Sobic006G205800 Sobic003G314200--Sobic006G094800 Sobic001G148000 Sobic001G148000 Sobic003G314200--Sobic001G148000 Sobic003G226600 Sobic003G226600 Sobic003G314200--Sobic003G226600 Sobic009G027200 Sobic009G027200 Sobic003G314200--Sobic009G027200 Sobic003G314200--Sobic001G207301 Sobic001G501701 Sobic001G501701 Sobic003G314200--Sobic001G501701 Sobic003G314200--Sobic004G338200 Sobic001G020200 Sobic001G020200 Sobic004G338200--Sobic001G020200 Sobic004G243000 Sobic004G243000 Sobic004G338200--Sobic004G243000 Sobic004G338200--Sobic003G314200 Sobic007G227500 Sobic007G227500 Sobic004G338200--Sobic007G227500 Sobic004G338200--Sobic008G040800 Sobic009G182500 Sobic009G182500 Sobic004G338200--Sobic009G182500 Sobic003G268800 Sobic003G268800 Sobic004G338200--Sobic003G268800 Sobic009G161700 Sobic009G161700 Sobic004G338200--Sobic009G161700 Sobic004G338200--Sobic006G094800
Octagon: transcription factors


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