Gene annotation
Transcriptome id Sobic.004G023700.5,Sobic.004G023700.7,Sobic.004G023700.8,Sobic.004G023700.1,Sobic.004G023700.9,Sobic.004G023700.2,Sobic.004G023700.6
Synonym Sb04g002100
Functional annotation N-dimethylguanosine tRNA methyltransferase, putative, expressed
UniProt A0A194YM95 , A0A194YND8 , A0A1Z5RKJ7
Pfam PF02005
Panther DB PTHR10631 PTHR10631:SF5 PTHR10631:SF5 PTHR10631
NCBI CDD -
KEGG Orthology K00555; TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
Gene Ontology GO:0008033; tRNA processing GO:0004809tRNA (guanine-N2-)-methyltransferase activity GO:0003723RNA binding GO:0003723RNA binding GO:0004809tRNA (guanine-N2-)-methyltransferase activity GO:0008033tRNA processing


Orthologs (automatic annotation)
TAIR AT3G02320 : N2,N2-dimethylguanosine tRNA methyltransferase
RAP-DB (Rice) LOC_Os10g21360.1 : N-dimethylguanosine tRNA methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a001810 , Zm00025a018789
Brachypodium PNT66707 , PNT66709 , PNT66708 , KQJ95240 , PNT66711 , PNT66712 , PNT66710 , KQJ95237 , KQJ95239 , KQJ95238
Barley HORVU2Hr1G017790.29 , HORVU2Hr1G017790.28 , HORVU2Hr1G017790.23 , HORVU2Hr1G017790.22 , HORVU2Hr1G017790.21 , HORVU2Hr1G017790.20 , HORVU2Hr1G017790.27 , HORVU2Hr1G017790.26 , HORVU2Hr1G017790.25 , HORVU2Hr1G017790.24 , HORVU2Hr1G017790.8 , HORVU2Hr1G017790.9 , HORVU2Hr1G017790.1 , HORVU2Hr1G017790.2 , HORVU2Hr1G017790.3 , HORVU2Hr1G017790.4 , HORVU2Hr1G017790.5 , HORVU2Hr1G017790.6 , HORVU2Hr1G017790.7 , HORVU2Hr1G017790.12 , HORVU2Hr1G017790.13 , HORVU2Hr1G017790.10 , HORVU2Hr1G017790.11 , HORVU2Hr1G017790.16 , HORVU2Hr1G017790.17 , HORVU2Hr1G017790.14 , HORVU2Hr1G017790.15 , HORVU2Hr1G017790.19
Wheat TraesCS2A02G105300 , TraesCS2A02G105300 , TraesCS2A02G105300 , TraesCS2D02G104900 , TraesCS2B02G122200 , TraesCS2B02G122200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G268850 - -
2 Sobic.003G261200 formyl transferase, putative, expressed K00604: MTFMT, methionyl-tRNA formyltransferase
3 Sobic.001G339100 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
4 Sobic.009G130800 tat pathway signal sequence family protein, expressed -
5 Sobic.001G333000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
6 Sobic.003G300500 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
7 Sobic.001G206200 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed K00218: protochlorophyllide reductase
8 Sobic.003G221700 psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed -
9 Sobic.001G531200 methylthioribose kinase, putative, expressed -
10 Sobic.003G030900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
12 Sobic.003G222500 phosphoglucomutase, putative, expressed K01835: phosphoglucomutase
13 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
14 Sobic.004G015700 serine/threonine-protein kinase receptor precursor, putative, expressed -
15 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
16 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
17 Sobic.007G162300 OsGrx_S12 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
18 Sobic.004G068300 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
19 Sobic.004G164100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.002G004000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3


Gene co-expression network
sample Sobic004G023700 Sobic004G023700 Sobic001G268850 Sobic001G268850 Sobic004G023700--Sobic001G268850 Sobic003G261200 Sobic003G261200 Sobic004G023700--Sobic003G261200 Sobic001G339100 Sobic001G339100 Sobic004G023700--Sobic001G339100 Sobic009G130800 Sobic009G130800 Sobic004G023700--Sobic009G130800 Sobic001G333000 Sobic001G333000 Sobic004G023700--Sobic001G333000 Sobic003G300500 Sobic003G300500 Sobic004G023700--Sobic003G300500 Sobic001G206200 Sobic001G206200 Sobic004G023700--Sobic001G206200 Sobic003G221700 Sobic003G221700 Sobic004G023700--Sobic003G221700 Sobic001G531200 Sobic001G531200 Sobic004G023700--Sobic001G531200 Sobic003G055300 Sobic003G055300 Sobic001G268850--Sobic003G055300 Sobic001G269000 Sobic001G269000 Sobic001G268850--Sobic001G269000 Sobic001G268850--Sobic001G206200 Sobic009G165200 Sobic009G165200 Sobic001G268850--Sobic009G165200 Sobic002G338000 Sobic002G338000 Sobic001G268850--Sobic002G338000 Sobic002G289100 Sobic002G289100 Sobic001G268850--Sobic002G289100 Sobic002G352100 Sobic002G352100 Sobic001G268850--Sobic002G352100 Sobic010G000500 Sobic010G000500 Sobic001G268850--Sobic010G000500 Sobic002G414400 Sobic002G414400 Sobic001G268850--Sobic002G414400 Sobic007G013400 Sobic007G013400 Sobic003G261200--Sobic007G013400 Sobic003G261200--Sobic009G130800 Sobic003G383500 Sobic003G383500 Sobic003G261200--Sobic003G383500 Sobic003G295800 Sobic003G295800 Sobic003G261200--Sobic003G295800 Sobic010G095200 Sobic010G095200 Sobic003G261200--Sobic010G095200 Sobic009G001500 Sobic009G001500 Sobic003G261200--Sobic009G001500 Sobic007G090537 Sobic007G090537 Sobic003G261200--Sobic007G090537 Sobic007G211100 Sobic007G211100 Sobic003G261200--Sobic007G211100 Sobic001G069500 Sobic001G069500 Sobic003G261200--Sobic001G069500 Sobic009G028400 Sobic009G028400 Sobic001G339100--Sobic009G028400 Sobic007G023300 Sobic007G023300 Sobic001G339100--Sobic007G023300 Sobic001G407900 Sobic001G407900 Sobic001G339100--Sobic001G407900 Sobic001G006000 Sobic001G006000 Sobic001G339100--Sobic001G006000 Sobic007G178500 Sobic007G178500 Sobic001G339100--Sobic007G178500 Sobic005G021600 Sobic005G021600 Sobic001G339100--Sobic005G021600 Sobic008G063500 Sobic008G063500 Sobic001G339100--Sobic008G063500 Sobic001G339100--Sobic003G221700 Sobic006G197700 Sobic006G197700 Sobic001G339100--Sobic006G197700 Sobic009G130800--Sobic007G090537 Sobic009G130800--Sobic003G261200 Sobic009G130800--Sobic010G095200 Sobic009G130800--Sobic007G013400 Sobic009G130800--Sobic003G295800 Sobic004G164100 Sobic004G164100 Sobic009G130800--Sobic004G164100 Sobic009G130800--Sobic009G001500 Sobic001G475600 Sobic001G475600 Sobic009G130800--Sobic001G475600 Sobic009G130800--Sobic007G211100 Sobic001G333000--Sobic003G221700 Sobic002G305700 Sobic002G305700 Sobic001G333000--Sobic002G305700 Sobic001G333000--Sobic001G531200 Sobic001G333000--Sobic010G095200 Sobic006G248200 Sobic006G248200 Sobic001G333000--Sobic006G248200 Sobic001G240000 Sobic001G240000 Sobic001G333000--Sobic001G240000 Sobic003G386300 Sobic003G386300 Sobic001G333000--Sobic003G386300 Sobic002G251400 Sobic002G251400 Sobic001G333000--Sobic002G251400 Sobic002G297400 Sobic002G297400 Sobic001G333000--Sobic002G297400 Sobic002G328900 Sobic002G328900 Sobic003G300500--Sobic002G328900 Sobic002G351000 Sobic002G351000 Sobic003G300500--Sobic002G351000 Sobic003G328200 Sobic003G328200 Sobic003G300500--Sobic003G328200 Sobic004G317900 Sobic004G317900 Sobic003G300500--Sobic004G317900 Sobic004G193400 Sobic004G193400 Sobic003G300500--Sobic004G193400 Sobic004G234200 Sobic004G234200 Sobic003G300500--Sobic004G234200 Sobic004G114800 Sobic004G114800 Sobic003G300500--Sobic004G114800 Sobic001G017000 Sobic001G017000 Sobic003G300500--Sobic001G017000 Sobic003G300500--Sobic003G295800 Sobic001G206200--Sobic002G338000 Sobic001G206200--Sobic003G055300 Sobic001G206200--Sobic010G000500 Sobic001G206200--Sobic002G414400 Sobic002G030200 Sobic002G030200 Sobic001G206200--Sobic002G030200 Sobic009G234600 Sobic009G234600 Sobic001G206200--Sobic009G234600 Sobic001G206200--Sobic004G234200 Sobic001G046900 Sobic001G046900 Sobic001G206200--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic001G206200--Sobic002G329600 Sobic003G221700--Sobic001G333000 Sobic006G111600 Sobic006G111600 Sobic003G221700--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic003G221700--Sobic004G179200 Sobic003G330100 Sobic003G330100 Sobic003G221700--Sobic003G330100 Sobic003G221700--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic003G221700--Sobic002G131700 Sobic003G245800 Sobic003G245800 Sobic003G221700--Sobic003G245800 Sobic009G234200 Sobic009G234200 Sobic003G221700--Sobic009G234200 Sobic008G072300 Sobic008G072300 Sobic003G221700--Sobic008G072300 Sobic001G531200--Sobic006G248200 Sobic001G531200--Sobic003G386300 Sobic001G531200--Sobic001G240000 Sobic001G527100 Sobic001G527100 Sobic001G531200--Sobic001G527100 Sobic001G531200--Sobic001G475600 Sobic001G531200--Sobic001G333000 Sobic001G040000 Sobic001G040000 Sobic001G531200--Sobic001G040000 Sobic002G198600 Sobic002G198600 Sobic001G531200--Sobic002G198600 Sobic001G122400 Sobic001G122400 Sobic001G531200--Sobic001G122400
Octagon: transcription factors


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