Gene annotation
Transcriptome id Sobic.004G024700.3,Sobic.004G024700.1,Sobic.004G024700.2
Synonym Sb04g002200
Functional annotation RNA polymerase II transcription factor B subunit 4, putative, expressed
UniProt A0A194YMB4 , A0A1Z5RKM1 , A0A194YNE3
Pfam PF03850
Panther DB PTHR12831 PTHR12831:SF0
NCBI CDD KOG2487; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4
KEGG Orthology K03143; TFIIH3, GTF2H3, transcription initiation factor TFIIH subunit 3
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0006289nucleotide-excision repair GO:0000439transcription factor TFIIH core complex


Orthologs (automatic annotation)
TAIR AT1G18340 : basal transcription factor complex subunit-related
RAP-DB (Rice) LOC_Os02g03340.2,LOC_Os02g03340.1,LOC_Os02g03340.5 : RNA polymerase II transcription factor B subunit 4, putative, expressed
MaizeGDB (Corn) Zm00025a018801 , Zm00025a034962
Brachypodium PNT65782 , KQJ93071 , KQJ93070
Barley HORVU6Hr1G014490.1 , HORVU6Hr1G014490.6 , HORVU6Hr1G014490.7 , HORVU6Hr1G014490.5 , HORVU6Hr1G014490.8 , HORVU6Hr1G014490.9 , HORVU6Hr1G014490.10 , HORVU6Hr1G014490.11
Wheat TraesCS6A02G084300 , TraesCS6B02G112700 , TraesCS6D02G077800
Populus -


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cDNA sequences
Sobic.004G024700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G147400 - -
2 Sobic.005G013200 BAH domain containing protein, expressed -
3 Sobic.007G103600 protein of unknown function DUF1296 domain containing protein, expressed -
4 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -
5 Sobic.009G017200 transporter family protein, putative, expressed K15276: SLC35B2, solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2
6 Sobic.002G165800 - -
7 Sobic.002G103600 glycosyl transferase, group 1 domain containing protein, expressed K03857: PIGA, phosphatidylinositol N-acetylglucosaminyltransferase subunit A
8 Sobic.002G063900 zinc ion binding protein, putative, expressed -
9 Sobic.001G295500 expressed protein -
10 Sobic.007G042400 HEAT repeat family protein, putative, expressed -
11 Sobic.003G444800 expressed protein -
12 Sobic.007G090430 - -
13 Sobic.003G039900 OsFBDUF1 - F-box and DUF domain containing protein, expressed -
14 Sobic.003G398400 expressed protein -
15 Sobic.001G425000 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
16 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
17 Sobic.002G357700 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
18 Sobic.001G035200 ThiF family domain containing protein, putative, expressed K04532: NAE1, amyloid beta precursor protein binding protein 1
19 Sobic.004G111700 tyrosine-protein phosphatase YVH1, putative, expressed K14819: DUSP12, dual specificity phosphatase 12
20 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B


Gene co-expression network
sample Sobic004G024700 Sobic004G024700 Sobic007G147400 Sobic007G147400 Sobic004G024700--Sobic007G147400 Sobic005G013200 Sobic005G013200 Sobic004G024700--Sobic005G013200 Sobic007G103600 Sobic007G103600 Sobic004G024700--Sobic007G103600 Sobic006G186400 Sobic006G186400 Sobic004G024700--Sobic006G186400 Sobic009G017200 Sobic009G017200 Sobic004G024700--Sobic009G017200 Sobic002G165800 Sobic002G165800 Sobic004G024700--Sobic002G165800 Sobic002G103600 Sobic002G103600 Sobic004G024700--Sobic002G103600 Sobic002G063900 Sobic002G063900 Sobic004G024700--Sobic002G063900 Sobic001G295500 Sobic001G295500 Sobic004G024700--Sobic001G295500 SobicK028600 SobicK028600 Sobic007G147400--SobicK028600 Sobic007G147400--Sobic002G063900 Sobic002G317400 Sobic002G317400 Sobic007G147400--Sobic002G317400 Sobic003G444800 Sobic003G444800 Sobic007G147400--Sobic003G444800 Sobic001G376200 Sobic001G376200 Sobic007G147400--Sobic001G376200 Sobic002G147100 Sobic002G147100 Sobic007G147400--Sobic002G147100 Sobic007G147400--Sobic002G103600 Sobic003G039900 Sobic003G039900 Sobic007G147400--Sobic003G039900 Sobic002G357700 Sobic002G357700 Sobic007G147400--Sobic002G357700 Sobic005G013200--Sobic002G103600 Sobic010G129200 Sobic010G129200 Sobic005G013200--Sobic010G129200 Sobic008G162900 Sobic008G162900 Sobic005G013200--Sobic008G162900 Sobic001G407200 Sobic001G407200 Sobic005G013200--Sobic001G407200 Sobic001G222500 Sobic001G222500 Sobic005G013200--Sobic001G222500 Sobic002G408200 Sobic002G408200 Sobic005G013200--Sobic002G408200 Sobic008G028700 Sobic008G028700 Sobic005G013200--Sobic008G028700 Sobic001G251700 Sobic001G251700 Sobic005G013200--Sobic001G251700 Sobic004G084300 Sobic004G084300 Sobic005G013200--Sobic004G084300 Sobic003G059750 Sobic003G059750 Sobic007G103600--Sobic003G059750 Sobic005G207500 Sobic005G207500 Sobic007G103600--Sobic005G207500 Sobic005G118600 Sobic005G118600 Sobic007G103600--Sobic005G118600 Sobic007G103600--Sobic003G444800 Sobic002G071500 Sobic002G071500 Sobic007G103600--Sobic002G071500 Sobic008G153000 Sobic008G153000 Sobic007G103600--Sobic008G153000 Sobic003G119000 Sobic003G119000 Sobic007G103600--Sobic003G119000 Sobic002G264200 Sobic002G264200 Sobic007G103600--Sobic002G264200 Sobic006G032500 Sobic006G032500 Sobic007G103600--Sobic006G032500 Sobic006G186400--Sobic008G153000 Sobic001G176200 Sobic001G176200 Sobic006G186400--Sobic001G176200 Sobic004G067700 Sobic004G067700 Sobic006G186400--Sobic004G067700 Sobic008G173100 Sobic008G173100 Sobic006G186400--Sobic008G173100 Sobic007G056500 Sobic007G056500 Sobic006G186400--Sobic007G056500 Sobic002G260400 Sobic002G260400 Sobic006G186400--Sobic002G260400 Sobic006G046700 Sobic006G046700 Sobic006G186400--Sobic006G046700 Sobic003G073000 Sobic003G073000 Sobic006G186400--Sobic003G073000 Sobic001G408700 Sobic001G408700 Sobic006G186400--Sobic001G408700 Sobic004G180900 Sobic004G180900 Sobic009G017200--Sobic004G180900 Sobic009G059400 Sobic009G059400 Sobic009G017200--Sobic009G059400 Sobic009G137900 Sobic009G137900 Sobic009G017200--Sobic009G137900 Sobic008G058800 Sobic008G058800 Sobic009G017200--Sobic008G058800 Sobic006G144000 Sobic006G144000 Sobic009G017200--Sobic006G144000 Sobic001G425000 Sobic001G425000 Sobic009G017200--Sobic001G425000 Sobic001G042200 Sobic001G042200 Sobic009G017200--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic009G017200--Sobic010G077500 Sobic005G198200 Sobic005G198200 Sobic009G017200--Sobic005G198200 Sobic004G209700 Sobic004G209700 Sobic002G165800--Sobic004G209700 Sobic002G165800--Sobic005G207500 Sobic006G096900 Sobic006G096900 Sobic002G165800--Sobic006G096900 Sobic002G165800--Sobic010G077500 Sobic010G226000 Sobic010G226000 Sobic002G165800--Sobic010G226000 Sobic002G165800--Sobic007G103600 Sobic009G228000 Sobic009G228000 Sobic002G165800--Sobic009G228000 Sobic006G056700 Sobic006G056700 Sobic002G165800--Sobic006G056700 Sobic009G092400 Sobic009G092400 Sobic002G165800--Sobic009G092400 Sobic002G103600--Sobic003G444800 Sobic002G103600--Sobic005G013200 Sobic002G103600--SobicK028600 Sobic002G103600--Sobic003G059750 Sobic001G311500 Sobic001G311500 Sobic002G103600--Sobic001G311500 Sobic009G247400 Sobic009G247400 Sobic002G103600--Sobic009G247400 Sobic002G103600--Sobic002G408200 Sobic002G103600--Sobic008G028700 Sobic007G042400 Sobic007G042400 Sobic002G103600--Sobic007G042400 Sobic002G063900--Sobic008G173100 Sobic006G116100 Sobic006G116100 Sobic002G063900--Sobic006G116100 Sobic004G357100 Sobic004G357100 Sobic002G063900--Sobic004G357100 Sobic002G063900--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic002G063900--Sobic007G090430 Sobic004G246100 Sobic004G246100 Sobic002G063900--Sobic004G246100 Sobic002G278000 Sobic002G278000 Sobic002G063900--Sobic002G278000 Sobic008G149800 Sobic008G149800 Sobic002G063900--Sobic008G149800 Sobic002G063900--SobicK028600 Sobic001G295500--Sobic001G176200 Sobic001G295500--Sobic001G425000 Sobic003G417900 Sobic003G417900 Sobic001G295500--Sobic003G417900 Sobic001G295500--Sobic005G013200 Sobic004G111700 Sobic004G111700 Sobic001G295500--Sobic004G111700 Sobic001G295500--Sobic006G186400 Sobic001G295500--Sobic008G173100 Sobic006G215900 Sobic006G215900 Sobic001G295500--Sobic006G215900 Sobic005G154500 Sobic005G154500 Sobic001G295500--Sobic005G154500
Octagon: transcription factors


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