Gene annotation
Transcriptome id Sobic.004G059300.1,Sobic.004G059300.2
Synonym ATPCNA2, PCNA2, Sb04g004980
Functional annotation PCNA - Putative DNA replicative polymerase clamp, expressed
UniProt A0A1Z5RLY5 , A0A194YMY9
Pfam PF02747 PF00705
Panther DB PTHR11352 PTHR11352:SF4
NCBI CDD KOG1636; DNA polymerase delta processivity factor (proliferating cell nuclear antigen)
KEGG Orthology K04802; proliferating cell nuclear antigen
Gene Ontology GO:0006275; regulation of DNA replication GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G07370 : proliferating cellular nuclear antigen 1
RAP-DB (Rice) LOC_Os02g56130.1 : PCNA - Putative DNA replicative polymerase clamp, expressed
MaizeGDB (Corn) -
Brachypodium KQJ92713 , PNT65345 , PNT65342 , PNT65643
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G063300 reductase, putative, expressed -
2 Sobic.006G143000 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
3 Sobic.007G084300 kelch repeat protein, putative, expressed -
4 Sobic.001G190300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@loricrin, putative, expressed -
5 Sobic.001G016700 ion channel DMI1-like, chloroplast precursor, putative, expressed -
6 Sobic.001G248300 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase
7 Sobic.003G086900 C2 domain containing protein, putative, expressed -
8 Sobic.006G030600 xa21, putative, expressed -
9 Sobic.007G165600 aminopeptidase, putative, expressed K01256: aminopeptidase N
10 Sobic.001G291000 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
11 Sobic.003G185400 - -
12 Sobic.002G140700 triacylglycerol lipase 1 precursor, putative, expressed -
13 Sobic.003G010300 cytochrome P450, putative, expressed -
14 Sobic.010G192800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.009G016600 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.002G373100 strictosidine synthase, putative, expressed -
17 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
18 Sobic.004G063400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GDU1, putative, expressed -
19 Sobic.006G076800 serine/threonine-protein kinase receptor precursor, putative, expressed -
20 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1


Gene co-expression network
sample Sobic004G059300 Sobic004G059300 Sobic007G063300 Sobic007G063300 Sobic004G059300--Sobic007G063300 Sobic006G143000 Sobic006G143000 Sobic004G059300--Sobic006G143000 Sobic007G084300 Sobic007G084300 Sobic004G059300--Sobic007G084300 Sobic001G190300 Sobic001G190300 Sobic004G059300--Sobic001G190300 Sobic001G016700 Sobic001G016700 Sobic004G059300--Sobic001G016700 Sobic001G248300 Sobic001G248300 Sobic004G059300--Sobic001G248300 Sobic003G086900 Sobic003G086900 Sobic004G059300--Sobic003G086900 Sobic006G030600 Sobic006G030600 Sobic004G059300--Sobic006G030600 Sobic007G165600 Sobic007G165600 Sobic004G059300--Sobic007G165600 Sobic002G165140 Sobic002G165140 Sobic007G063300--Sobic002G165140 Sobic010G192800 Sobic010G192800 Sobic007G063300--Sobic010G192800 Sobic009G016600 Sobic009G016600 Sobic007G063300--Sobic009G016600 Sobic007G063300--Sobic001G016700 Sobic007G063300--Sobic006G143000 Sobic007G063300--Sobic004G059300 Sobic002G249300 Sobic002G249300 Sobic007G063300--Sobic002G249300 Sobic007G063300--Sobic007G084300 Sobic003G404200 Sobic003G404200 Sobic007G063300--Sobic003G404200 Sobic006G143000--Sobic007G084300 Sobic006G143000--Sobic009G016600 Sobic006G143000--Sobic003G086900 Sobic006G143000--Sobic006G030600 Sobic002G373100 Sobic002G373100 Sobic006G143000--Sobic002G373100 Sobic010G196500 Sobic010G196500 Sobic006G143000--Sobic010G196500 Sobic006G143000--Sobic007G063300 Sobic006G143000--Sobic004G059300 Sobic008G146900 Sobic008G146900 Sobic006G143000--Sobic008G146900 Sobic007G084300--Sobic006G030600 Sobic007G084300--Sobic006G143000 Sobic007G084300--Sobic010G196500 Sobic004G034600 Sobic004G034600 Sobic007G084300--Sobic004G034600 Sobic007G084300--Sobic002G373100 Sobic007G084300--Sobic003G086900 Sobic007G084300--Sobic009G016600 Sobic007G084300--Sobic002G249300 Sobic002G193100 Sobic002G193100 Sobic007G084300--Sobic002G193100 Sobic001G190300--Sobic004G059300 Sobic007G034000 Sobic007G034000 Sobic001G190300--Sobic007G034000 Sobic007G092700 Sobic007G092700 Sobic001G190300--Sobic007G092700 Sobic006G082000 Sobic006G082000 Sobic001G190300--Sobic006G082000 Sobic001G190300--Sobic006G143000 Sobic004G028600 Sobic004G028600 Sobic001G190300--Sobic004G028600 Sobic008G074400 Sobic008G074400 Sobic001G190300--Sobic008G074400 Sobic001G190300--Sobic009G016600 Sobic009G226600 Sobic009G226600 Sobic001G190300--Sobic009G226600 Sobic002G430000 Sobic002G430000 Sobic001G016700--Sobic002G430000 Sobic002G111000 Sobic002G111000 Sobic001G016700--Sobic002G111000 Sobic001G207400 Sobic001G207400 Sobic001G016700--Sobic001G207400 Sobic010G139600 Sobic010G139600 Sobic001G016700--Sobic010G139600 Sobic003G110000 Sobic003G110000 Sobic001G016700--Sobic003G110000 Sobic001G390800 Sobic001G390800 Sobic001G016700--Sobic001G390800 Sobic006G204900 Sobic006G204900 Sobic001G016700--Sobic006G204900 Sobic003G322700 Sobic003G322700 Sobic001G016700--Sobic003G322700 Sobic001G016700--Sobic003G086900 Sobic004G355000 Sobic004G355000 Sobic001G248300--Sobic004G355000 Sobic002G169900 Sobic002G169900 Sobic001G248300--Sobic002G169900 Sobic001G178700 Sobic001G178700 Sobic001G248300--Sobic001G178700 Sobic004G052900 Sobic004G052900 Sobic001G248300--Sobic004G052900 Sobic005G001000 Sobic005G001000 Sobic001G248300--Sobic005G001000 Sobic009G094300 Sobic009G094300 Sobic001G248300--Sobic009G094300 Sobic010G112000 Sobic010G112000 Sobic001G248300--Sobic010G112000 Sobic004G329400 Sobic004G329400 Sobic001G248300--Sobic004G329400 Sobic004G113400 Sobic004G113400 Sobic001G248300--Sobic004G113400 Sobic007G193700 Sobic007G193700 Sobic003G086900--Sobic007G193700 Sobic006G225900 Sobic006G225900 Sobic003G086900--Sobic006G225900 Sobic003G086900--Sobic010G196500 Sobic004G174200 Sobic004G174200 Sobic003G086900--Sobic004G174200 Sobic003G086900--Sobic001G016700 Sobic003G086900--Sobic001G390800 Sobic001G268200 Sobic001G268200 Sobic003G086900--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic003G086900--Sobic001G121200 Sobic003G422500 Sobic003G422500 Sobic003G086900--Sobic003G422500 Sobic006G030600--Sobic007G084300 Sobic006G030600--Sobic004G034600 Sobic006G030600--Sobic007G193700 Sobic004G131040 Sobic004G131040 Sobic006G030600--Sobic004G131040 Sobic006G030600--Sobic010G196500 Sobic006G030600--Sobic003G086900 Sobic006G030600--Sobic002G193100 Sobic006G030600--Sobic006G143000 Sobic002G181300 Sobic002G181300 Sobic006G030600--Sobic002G181300 Sobic007G103100 Sobic007G103100 Sobic007G165600--Sobic007G103100 Sobic006G055200 Sobic006G055200 Sobic007G165600--Sobic006G055200 Sobic001G004400 Sobic001G004400 Sobic007G165600--Sobic001G004400 Sobic005G122700 Sobic005G122700 Sobic007G165600--Sobic005G122700 Sobic002G133300 Sobic002G133300 Sobic007G165600--Sobic002G133300 Sobic009G056200 Sobic009G056200 Sobic007G165600--Sobic009G056200 Sobic001G194200 Sobic001G194200 Sobic007G165600--Sobic001G194200 Sobic002G316600 Sobic002G316600 Sobic007G165600--Sobic002G316600 Sobic003G186000 Sobic003G186000 Sobic007G165600--Sobic003G186000
Octagon: transcription factors


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