Gene annotation
Transcriptome id Sobic.004G107300.2,Sobic.004G107300.1
Synonym Sb04g008760
Functional annotation "GW2(Ortholog in rice:Song et al., 2007 (PubMedID : 31659880)
expressed protein
UniProt A0A194YNZ0 , A0A194YNY3
Pfam -
Panther DB PTHR31315
NCBI CDD KOG2789; Putative Zn-finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G78420 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g14720.1 : expressed protein
MaizeGDB (Corn) Zm00025a034470 , Zm00025a019986
Brachypodium KQJ94216 , KQJ94214 , KQJ94215
Barley HORVU6Hr1G044080.16 , HORVU6Hr1G044080.14 , HORVU6Hr1G044080.15 , HORVU6Hr1G044080.12 , HORVU6Hr1G044080.13 , HORVU6Hr1G044080.11 , HORVU6Hr1G044080.8 , HORVU6Hr1G044080.9 , HORVU6Hr1G044080.4 , HORVU6Hr1G044080.7 , HORVU6Hr1G044080.1 , HORVU6Hr1G044080.2
Wheat TraesCS6B02G215300 , TraesCS6D02G176900 , TraesCS6D02G176900 , TraesCS6A02G189300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G084401 - -
2 Sobic.002G139000 OsFBX237 - F-box domain containing protein, expressed -
3 Sobic.002G033600 Leucine Rich Repeat family protein, expressed -
4 Sobic.001G497000 RNA helicase SDE3, putative, expressed K18422: helicase MOV-10
5 Sobic.006G279900 RING finger protein 13, putative, expressed K15692: RNF13, E3 ubiquitin-protein ligase RNF13
6 Sobic.001G533100 GHMP kinases ATP-binding protein, putative, expressed K05305: fucokinase
7 Sobic.001G335201 - -
8 Sobic.003G173400 tetratricopeptide repeat protein 5, putative, expressed -
9 Sobic.003G402900 HYS1, putative, expressed -
10 Sobic.007G070300 OsFBL41 - F-box domain and LRR containing protein, expressed -
11 Sobic.003G045000 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
12 Sobic.010G237650 - -
13 Sobic.001G296800 WD repeat-containing protein 8, putative, expressed -
14 Sobic.008G090300 - -
15 Sobic.007G139400 OsFBL33 - F-box domain and LRR containing protein, expressed -
16 Sobic.006G104100 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
17 Sobic.007G053400 nuclear matrix protein 1, putative, expressed -
18 Sobic.004G086000 zinc finger family protein, putative, expressed -
19 Sobic.004G229000 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
20 Sobic.002G268900 flap endonuclease, putative, expressed K15338: GEN1, flap endonuclease GEN


Gene co-expression network
sample Sobic004G107300 Sobic004G107300 Sobic008G084401 Sobic008G084401 Sobic004G107300--Sobic008G084401 Sobic002G139000 Sobic002G139000 Sobic004G107300--Sobic002G139000 Sobic002G033600 Sobic002G033600 Sobic004G107300--Sobic002G033600 Sobic001G497000 Sobic001G497000 Sobic004G107300--Sobic001G497000 Sobic006G279900 Sobic006G279900 Sobic004G107300--Sobic006G279900 Sobic001G533100 Sobic001G533100 Sobic004G107300--Sobic001G533100 Sobic001G335201 Sobic001G335201 Sobic004G107300--Sobic001G335201 Sobic003G173400 Sobic003G173400 Sobic004G107300--Sobic003G173400 Sobic003G402900 Sobic003G402900 Sobic004G107300--Sobic003G402900 Sobic001G361200 Sobic001G361200 Sobic008G084401--Sobic001G361200 Sobic008G090300 Sobic008G090300 Sobic008G084401--Sobic008G090300 Sobic003G045000 Sobic003G045000 Sobic008G084401--Sobic003G045000 Sobic006G066000 Sobic006G066000 Sobic008G084401--Sobic006G066000 Sobic001G242300 Sobic001G242300 Sobic008G084401--Sobic001G242300 Sobic009G122900 Sobic009G122900 Sobic008G084401--Sobic009G122900 Sobic008G084401--Sobic001G533100 Sobic005G216800 Sobic005G216800 Sobic008G084401--Sobic005G216800 Sobic003G397100 Sobic003G397100 Sobic008G084401--Sobic003G397100 Sobic004G027000 Sobic004G027000 Sobic002G139000--Sobic004G027000 Sobic001G422700 Sobic001G422700 Sobic002G139000--Sobic001G422700 Sobic001G217100 Sobic001G217100 Sobic002G139000--Sobic001G217100 Sobic006G167300 Sobic006G167300 Sobic002G139000--Sobic006G167300 Sobic006G067700 Sobic006G067700 Sobic002G139000--Sobic006G067700 Sobic009G056300 Sobic009G056300 Sobic002G139000--Sobic009G056300 Sobic001G296800 Sobic001G296800 Sobic002G139000--Sobic001G296800 Sobic010G217100 Sobic010G217100 Sobic002G139000--Sobic010G217100 Sobic004G225300 Sobic004G225300 Sobic002G139000--Sobic004G225300 Sobic010G237650 Sobic010G237650 Sobic002G033600--Sobic010G237650 Sobic007G139400 Sobic007G139400 Sobic002G033600--Sobic007G139400 Sobic002G268900 Sobic002G268900 Sobic002G033600--Sobic002G268900 Sobic001G049600 Sobic001G049600 Sobic002G033600--Sobic001G049600 Sobic002G061400 Sobic002G061400 Sobic002G033600--Sobic002G061400 Sobic007G188900 Sobic007G188900 Sobic002G033600--Sobic007G188900 Sobic010G199800 Sobic010G199800 Sobic002G033600--Sobic010G199800 Sobic009G102000 Sobic009G102000 Sobic002G033600--Sobic009G102000 Sobic002G334600 Sobic002G334600 Sobic002G033600--Sobic002G334600 Sobic009G120400 Sobic009G120400 Sobic001G497000--Sobic009G120400 Sobic004G006000 Sobic004G006000 Sobic001G497000--Sobic004G006000 Sobic002G173400 Sobic002G173400 Sobic001G497000--Sobic002G173400 Sobic003G194800 Sobic003G194800 Sobic001G497000--Sobic003G194800 Sobic003G299500 Sobic003G299500 Sobic001G497000--Sobic003G299500 Sobic001G497000--Sobic003G045000 Sobic010G143600 Sobic010G143600 Sobic001G497000--Sobic010G143600 Sobic002G052800 Sobic002G052800 Sobic001G497000--Sobic002G052800 Sobic007G034200 Sobic007G034200 Sobic001G497000--Sobic007G034200 Sobic008G008400 Sobic008G008400 Sobic006G279900--Sobic008G008400 Sobic003G151300 Sobic003G151300 Sobic006G279900--Sobic003G151300 Sobic006G213100 Sobic006G213100 Sobic006G279900--Sobic006G213100 Sobic010G046400 Sobic010G046400 Sobic006G279900--Sobic010G046400 Sobic004G232000 Sobic004G232000 Sobic006G279900--Sobic004G232000 Sobic003G128000 Sobic003G128000 Sobic006G279900--Sobic003G128000 Sobic007G003600 Sobic007G003600 Sobic006G279900--Sobic007G003600 Sobic006G100000 Sobic006G100000 Sobic006G279900--Sobic006G100000 Sobic003G229400 Sobic003G229400 Sobic006G279900--Sobic003G229400 Sobic002G125800 Sobic002G125800 Sobic001G533100--Sobic002G125800 Sobic005G031000 Sobic005G031000 Sobic001G533100--Sobic005G031000 Sobic004G034300 Sobic004G034300 Sobic001G533100--Sobic004G034300 Sobic004G336300 Sobic004G336300 Sobic001G533100--Sobic004G336300 Sobic003G130900 Sobic003G130900 Sobic001G533100--Sobic003G130900 Sobic002G426100 Sobic002G426100 Sobic001G533100--Sobic002G426100 Sobic005G129201 Sobic005G129201 Sobic001G533100--Sobic005G129201 Sobic007G173000 Sobic007G173000 Sobic001G533100--Sobic007G173000 Sobic003G005900 Sobic003G005900 Sobic001G533100--Sobic003G005900 Sobic007G088900 Sobic007G088900 Sobic001G335201--Sobic007G088900 Sobic003G311000 Sobic003G311000 Sobic001G335201--Sobic003G311000 Sobic001G335201--Sobic007G139400 Sobic006G216000 Sobic006G216000 Sobic001G335201--Sobic006G216000 Sobic001G309100 Sobic001G309100 Sobic001G335201--Sobic001G309100 Sobic001G472100 Sobic001G472100 Sobic001G335201--Sobic001G472100 Sobic001G537800 Sobic001G537800 Sobic001G335201--Sobic001G537800 Sobic010G217200 Sobic010G217200 Sobic001G335201--Sobic010G217200 Sobic001G335201--Sobic009G056300 Sobic002G362200 Sobic002G362200 Sobic003G173400--Sobic002G362200 Sobic003G173400--Sobic002G426100 Sobic008G111600 Sobic008G111600 Sobic003G173400--Sobic008G111600 Sobic007G047600 Sobic007G047600 Sobic003G173400--Sobic007G047600 Sobic006G181800 Sobic006G181800 Sobic003G173400--Sobic006G181800 Sobic009G049200 Sobic009G049200 Sobic003G173400--Sobic009G049200 Sobic003G173400--Sobic001G533100 Sobic001G140700 Sobic001G140700 Sobic003G173400--Sobic001G140700 Sobic004G001600 Sobic004G001600 Sobic003G173400--Sobic004G001600 Sobic007G030100 Sobic007G030100 Sobic003G402900--Sobic007G030100 Sobic003G368400 Sobic003G368400 Sobic003G402900--Sobic003G368400 Sobic001G385000 Sobic001G385000 Sobic003G402900--Sobic001G385000 Sobic004G017900 Sobic004G017900 Sobic003G402900--Sobic004G017900 Sobic007G189100 Sobic007G189100 Sobic003G402900--Sobic007G189100 Sobic002G147100 Sobic002G147100 Sobic003G402900--Sobic002G147100 Sobic006G215100 Sobic006G215100 Sobic003G402900--Sobic006G215100 Sobic002G147200 Sobic002G147200 Sobic003G402900--Sobic002G147200 Sobic007G043700 Sobic007G043700 Sobic003G402900--Sobic007G043700
Octagon: transcription factors


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