Gene annotation
Transcriptome id Sobic.004G086000.1
Synonym Sb04g007110
Functional annotation zinc finger family protein, putative, expressed
UniProt A0A194YNI9
Pfam PF00641
Panther DB PTHR23111 PTHR23111:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G15680 : Ran BP2/NZF zinc finger-like superfamily protein
RAP-DB (Rice) LOC_Os02g10920.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a019505 , Zm00025a034605
Brachypodium KQJ93938 , KQJ93939 , KQJ93937 , KQJ93940
Barley HORVU6Hr1G037610.5 , HORVU6Hr1G037610.9 , HORVU6Hr1G037610.8 , HORVU6Hr1G037610.7 , HORVU6Hr1G037610.6 , HORVU6Hr1G037610.4 , HORVU6Hr1G037610.3 , HORVU6Hr1G037610.2 , HORVU6Hr1G037610.1 , HORVU6Hr1G037610.12 , HORVU6Hr1G037610.11 , HORVU6Hr1G037610.10
Wheat TraesCS6D02G167500 , TraesCS6A02G176400 , TraesCS6A02G176400 , TraesCS6B02G209100 , TraesCS6B02G209100
Populus PNT33679 , PNT33678


JBrowse

Open New Page


cDNA sequences
Sobic.004G086000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G033600 Leucine Rich Repeat family protein, expressed -
2 Sobic.005G178950 - -
3 Sobic.004G316800 RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
4 Sobic.004G042900 VIL2 protein, putative, expressed -
5 Sobic.001G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@squalene synthetase, putative, expressed K00801: farnesyl-diphosphate farnesyltransferase
6 Sobic.003G211700 expressed protein -
7 Sobic.009G199500 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
8 Sobic.001G136600 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
9 Sobic.005G009100 OsFBX184 - F-box domain containing protein, expressed -
10 Sobic.002G299100 SET domain containing protein, expressed -
11 Sobic.007G053400 nuclear matrix protein 1, putative, expressed -
12 Sobic.004G085300 Sel1 repeat domain containing protein, putative, expressed -
13 Sobic.002G268900 flap endonuclease, putative, expressed K15338: GEN1, flap endonuclease GEN
14 Sobic.002G306400 zinc finger family protein, putative, expressed -
15 Sobic.009G102000 OsFBX9 - F-box domain containing protein, expressed -
16 Sobic.004G242700 heat shock protein DnaJ, putative, expressed -
17 Sobic.006G100000 pentatricopeptide, putative, expressed -
18 Sobic.007G030600 NOL1/NOP2/sun family protein, putative, expressed -
19 Sobic.004G107300 "GW2(Ortholog in rice:Song et al., 2007(PubMedID : 31659880)@expressed protein -
20 Sobic.002G139000 OsFBX237 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic004G086000 Sobic004G086000 Sobic002G033600 Sobic002G033600 Sobic004G086000--Sobic002G033600 Sobic005G178950 Sobic005G178950 Sobic004G086000--Sobic005G178950 Sobic004G316800 Sobic004G316800 Sobic004G086000--Sobic004G316800 Sobic004G042900 Sobic004G042900 Sobic004G086000--Sobic004G042900 Sobic001G049600 Sobic001G049600 Sobic004G086000--Sobic001G049600 Sobic003G211700 Sobic003G211700 Sobic004G086000--Sobic003G211700 Sobic009G199500 Sobic009G199500 Sobic004G086000--Sobic009G199500 Sobic001G136600 Sobic001G136600 Sobic004G086000--Sobic001G136600 Sobic005G009100 Sobic005G009100 Sobic004G086000--Sobic005G009100 Sobic010G237650 Sobic010G237650 Sobic002G033600--Sobic010G237650 Sobic007G139400 Sobic007G139400 Sobic002G033600--Sobic007G139400 Sobic002G268900 Sobic002G268900 Sobic002G033600--Sobic002G268900 Sobic002G033600--Sobic001G049600 Sobic002G061400 Sobic002G061400 Sobic002G033600--Sobic002G061400 Sobic007G188900 Sobic007G188900 Sobic002G033600--Sobic007G188900 Sobic010G199800 Sobic010G199800 Sobic002G033600--Sobic010G199800 Sobic009G102000 Sobic009G102000 Sobic002G033600--Sobic009G102000 Sobic002G334600 Sobic002G334600 Sobic002G033600--Sobic002G334600 Sobic006G091000 Sobic006G091000 Sobic005G178950--Sobic006G091000 Sobic001G042200 Sobic001G042200 Sobic005G178950--Sobic001G042200 Sobic009G040800 Sobic009G040800 Sobic005G178950--Sobic009G040800 Sobic007G187600 Sobic007G187600 Sobic005G178950--Sobic007G187600 Sobic002G299100 Sobic002G299100 Sobic005G178950--Sobic002G299100 Sobic007G056500 Sobic007G056500 Sobic005G178950--Sobic007G056500 Sobic010G077500 Sobic010G077500 Sobic005G178950--Sobic010G077500 Sobic010G074900 Sobic010G074900 Sobic005G178950--Sobic010G074900 Sobic009G151200 Sobic009G151200 Sobic005G178950--Sobic009G151200 Sobic007G115900 Sobic007G115900 Sobic004G316800--Sobic007G115900 Sobic004G316800--Sobic003G211700 Sobic001G522900 Sobic001G522900 Sobic004G316800--Sobic001G522900 Sobic006G092800 Sobic006G092800 Sobic004G316800--Sobic006G092800 Sobic006G258900 Sobic006G258900 Sobic004G316800--Sobic006G258900 Sobic002G378200 Sobic002G378200 Sobic004G316800--Sobic002G378200 Sobic003G374000 Sobic003G374000 Sobic004G316800--Sobic003G374000 Sobic004G316800--Sobic010G074900 Sobic004G007300 Sobic004G007300 Sobic004G316800--Sobic004G007300 Sobic002G147100 Sobic002G147100 Sobic004G042900--Sobic002G147100 Sobic001G017200 Sobic001G017200 Sobic004G042900--Sobic001G017200 Sobic004G042900--Sobic005G009100 Sobic004G353400 Sobic004G353400 Sobic004G042900--Sobic004G353400 Sobic007G030100 Sobic007G030100 Sobic004G042900--Sobic007G030100 Sobic003G190200 Sobic003G190200 Sobic004G042900--Sobic003G190200 Sobic006G144000 Sobic006G144000 Sobic004G042900--Sobic006G144000 Sobic002G147200 Sobic002G147200 Sobic004G042900--Sobic002G147200 Sobic004G218300 Sobic004G218300 Sobic004G042900--Sobic004G218300 Sobic004G061900 Sobic004G061900 Sobic001G049600--Sobic004G061900 Sobic004G242700 Sobic004G242700 Sobic001G049600--Sobic004G242700 Sobic001G049600--Sobic002G033600 Sobic002G076400 Sobic002G076400 Sobic001G049600--Sobic002G076400 Sobic001G049600--Sobic007G188900 Sobic007G191100 Sobic007G191100 Sobic001G049600--Sobic007G191100 Sobic001G049600--Sobic006G092800 Sobic004G030700 Sobic004G030700 Sobic001G049600--Sobic004G030700 Sobic006G262600 Sobic006G262600 Sobic001G049600--Sobic006G262600 Sobic003G211700--Sobic007G115900 Sobic003G211700--Sobic004G316800 Sobic007G053400 Sobic007G053400 Sobic003G211700--Sobic007G053400 Sobic007G158900 Sobic007G158900 Sobic003G211700--Sobic007G158900 Sobic003G113400 Sobic003G113400 Sobic003G211700--Sobic003G113400 Sobic007G212800 Sobic007G212800 Sobic003G211700--Sobic007G212800 Sobic003G211700--Sobic005G178950 Sobic010G048900 Sobic010G048900 Sobic003G211700--Sobic010G048900 Sobic003G131300 Sobic003G131300 Sobic003G211700--Sobic003G131300 Sobic009G199500--Sobic007G158900 Sobic009G227100 Sobic009G227100 Sobic009G199500--Sobic009G227100 Sobic003G445200 Sobic003G445200 Sobic009G199500--Sobic003G445200 Sobic009G199500--Sobic002G299100 Sobic002G131400 Sobic002G131400 Sobic009G199500--Sobic002G131400 Sobic004G122900 Sobic004G122900 Sobic009G199500--Sobic004G122900 Sobic004G084400 Sobic004G084400 Sobic009G199500--Sobic004G084400 Sobic001G043200 Sobic001G043200 Sobic009G199500--Sobic001G043200 Sobic002G398500 Sobic002G398500 Sobic009G199500--Sobic002G398500 Sobic001G136600--Sobic004G122900 Sobic001G136600--Sobic009G102000 Sobic001G136600--Sobic005G009100 Sobic001G521700 Sobic001G521700 Sobic001G136600--Sobic001G521700 Sobic009G162100 Sobic009G162100 Sobic001G136600--Sobic009G162100 Sobic006G103700 Sobic006G103700 Sobic001G136600--Sobic006G103700 Sobic002G203600 Sobic002G203600 Sobic001G136600--Sobic002G203600 Sobic005G025300 Sobic005G025300 Sobic001G136600--Sobic005G025300 Sobic009G156100 Sobic009G156100 Sobic001G136600--Sobic009G156100 Sobic001G141400 Sobic001G141400 Sobic005G009100--Sobic001G141400 Sobic005G009100--Sobic004G122900 Sobic005G009100--Sobic002G147200 Sobic005G009100--Sobic009G199500 Sobic005G009100--Sobic004G042900 Sobic007G192400 Sobic007G192400 Sobic005G009100--Sobic007G192400 Sobic010G181600 Sobic010G181600 Sobic005G009100--Sobic010G181600 Sobic005G123400 Sobic005G123400 Sobic005G009100--Sobic005G123400 Sobic005G009100--Sobic007G030100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.