Gene annotation
Transcriptome id Sobic.004G122800.1
Synonym Sb04g010240
Functional annotation aminotransferase domain containing protein, putative, expressed
UniProt A0A194YP88
Pfam PF01063
Panther DB PTHR11825 PTHR11825:SF48
NCBI CDD KOG0975; Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily
KEGG Orthology K18482; 4-amino-4-deoxychorismate lyase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT5G57850 : D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
RAP-DB (Rice) LOC_Os02g17330.1 : aminotransferase domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a019829
Brachypodium KQJ94359 , KQJ94360
Barley HORVU6Hr1G035160.6 , HORVU6Hr1G035160.5 , HORVU6Hr1G035160.3 , HORVU6Hr1G035160.2 , HORVU6Hr1G035160.1 , HORVU6Hr1G035160.7 , HORVU6Hr1G035160.4 , HORVU6Hr1G035160.8
Wheat TraesCS6A02G172200 , TraesCS6D02G161500 , TraesCS6B02G200000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G024900 major facilitator superfamily antiporter, putative, expressed -
2 Sobic.002G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
3 Sobic.003G440900 Invertase genes(PubMedID : 24456189)@"Beta-fructofuranosidase, cell wall Invertase 4 (Os)"(PubMedID : 27208977)@Sugar degradation(PubMedID : 27330561)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
4 Sobic.007G109900 bZIP transcription factor domain containing protein, expressed -
5 Sobic.003G241500 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
6 Sobic.001G273500 leucine-rich repeat receptor-like protein kinase 1, putative, expressed -
7 Sobic.003G428400 beta-galactosidase, putative, expressed K01190: beta-galactosidase
8 Sobic.008G182700 thaumatin, putative, expressed -
9 Sobic.003G204501 - -
10 Sobic.004G242500 glycosyl hydrolase family 47 domain contain protein, expressed K10084: ER degradation enhancer, mannosidase alpha-like 1
11 Sobic.002G084600 - -
12 Sobic.004G173600 OsPDIL5-3 protein disulfide isomerase PDIL5-3, expressed K09580: PDIA1, protein disulfide-isomerase A1
13 Sobic.007G128600 CC-NBS-LRR protein, putative, expressed -
14 Sobic.009G250200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed -
15 Sobic.002G210800 hypothetical protein -
16 Sobic.002G320100 expressed protein -
17 Sobic.003G061400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@basic helix-loop-helix, putative, expressed -
18 Sobic.003G442500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CESA2 - cellulose synthase, expressed -
19 Sobic.010G203600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
20 Sobic.002G141300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic004G122800 Sobic004G122800 Sobic005G024900 Sobic005G024900 Sobic004G122800--Sobic005G024900 Sobic002G087800 Sobic002G087800 Sobic004G122800--Sobic002G087800 Sobic003G440900 Sobic003G440900 Sobic004G122800--Sobic003G440900 Sobic007G109900 Sobic007G109900 Sobic004G122800--Sobic007G109900 Sobic003G241500 Sobic003G241500 Sobic004G122800--Sobic003G241500 Sobic001G273500 Sobic001G273500 Sobic004G122800--Sobic001G273500 Sobic003G428400 Sobic003G428400 Sobic004G122800--Sobic003G428400 Sobic008G182700 Sobic008G182700 Sobic004G122800--Sobic008G182700 Sobic003G204501 Sobic003G204501 Sobic004G122800--Sobic003G204501 Sobic005G024900--Sobic002G087800 Sobic001G132000 Sobic001G132000 Sobic005G024900--Sobic001G132000 Sobic003G061400 Sobic003G061400 Sobic005G024900--Sobic003G061400 Sobic005G024900--Sobic003G440900 Sobic005G024900--Sobic003G241500 Sobic004G333200 Sobic004G333200 Sobic005G024900--Sobic004G333200 Sobic006G244400 Sobic006G244400 Sobic005G024900--Sobic006G244400 Sobic005G152200 Sobic005G152200 Sobic005G024900--Sobic005G152200 Sobic006G127100 Sobic006G127100 Sobic005G024900--Sobic006G127100 Sobic002G087800--Sobic005G024900 Sobic009G057300 Sobic009G057300 Sobic002G087800--Sobic009G057300 Sobic003G388251 Sobic003G388251 Sobic002G087800--Sobic003G388251 Sobic009G226600 Sobic009G226600 Sobic002G087800--Sobic009G226600 Sobic002G087800--Sobic003G241500 Sobic001G474500 Sobic001G474500 Sobic002G087800--Sobic001G474500 Sobic003G061800 Sobic003G061800 Sobic002G087800--Sobic003G061800 Sobic001G305800 Sobic001G305800 Sobic002G087800--Sobic001G305800 Sobic005G178100 Sobic005G178100 Sobic002G087800--Sobic005G178100 Sobic002G117900 Sobic002G117900 Sobic003G440900--Sobic002G117900 Sobic003G440900--Sobic005G024900 Sobic002G422500 Sobic002G422500 Sobic003G440900--Sobic002G422500 Sobic007G196300 Sobic007G196300 Sobic003G440900--Sobic007G196300 Sobic004G173600 Sobic004G173600 Sobic003G440900--Sobic004G173600 Sobic003G440900--Sobic002G087800 Sobic010G193900 Sobic010G193900 Sobic003G440900--Sobic010G193900 Sobic006G247100 Sobic006G247100 Sobic003G440900--Sobic006G247100 Sobic007G136100 Sobic007G136100 Sobic003G440900--Sobic007G136100 Sobic007G109900--Sobic003G204501 Sobic004G008800 Sobic004G008800 Sobic007G109900--Sobic004G008800 Sobic007G109900--Sobic002G087800 Sobic005G169400 Sobic005G169400 Sobic007G109900--Sobic005G169400 Sobic007G128600 Sobic007G128600 Sobic007G109900--Sobic007G128600 Sobic007G109900--Sobic006G244400 Sobic007G109900--Sobic003G428400 Sobic007G109900--Sobic005G024900 Sobic001G322700 Sobic001G322700 Sobic007G109900--Sobic001G322700 Sobic003G241500--Sobic002G087800 Sobic002G315800 Sobic002G315800 Sobic003G241500--Sobic002G315800 Sobic002G415900 Sobic002G415900 Sobic003G241500--Sobic002G415900 Sobic003G241500--Sobic005G024900 Sobic004G345800 Sobic004G345800 Sobic003G241500--Sobic004G345800 Sobic003G241500--Sobic009G057300 Sobic004G127700 Sobic004G127700 Sobic003G241500--Sobic004G127700 Sobic003G241500--Sobic001G474500 Sobic003G241500--Sobic003G428400 Sobic003G316300 Sobic003G316300 Sobic001G273500--Sobic003G316300 Sobic009G000200 Sobic009G000200 Sobic001G273500--Sobic009G000200 Sobic009G079300 Sobic009G079300 Sobic001G273500--Sobic009G079300 Sobic006G149600 Sobic006G149600 Sobic001G273500--Sobic006G149600 Sobic003G332000 Sobic003G332000 Sobic001G273500--Sobic003G332000 Sobic001G298500 Sobic001G298500 Sobic001G273500--Sobic001G298500 Sobic007G025800 Sobic007G025800 Sobic001G273500--Sobic007G025800 Sobic004G162400 Sobic004G162400 Sobic001G273500--Sobic004G162400 Sobic009G200300 Sobic009G200300 Sobic001G273500--Sobic009G200300 Sobic007G068100 Sobic007G068100 Sobic003G428400--Sobic007G068100 Sobic003G428400--Sobic001G474500 Sobic001G325200 Sobic001G325200 Sobic003G428400--Sobic001G325200 Sobic001G015500 Sobic001G015500 Sobic003G428400--Sobic001G015500 Sobic010G205200 Sobic010G205200 Sobic003G428400--Sobic010G205200 Sobic001G069900 Sobic001G069900 Sobic003G428400--Sobic001G069900 Sobic003G428400--Sobic009G057300 Sobic001G438600 Sobic001G438600 Sobic003G428400--Sobic001G438600 Sobic010G112300 Sobic010G112300 Sobic003G428400--Sobic010G112300 Sobic002G324000 Sobic002G324000 Sobic008G182700--Sobic002G324000 Sobic003G184900 Sobic003G184900 Sobic008G182700--Sobic003G184900 Sobic008G182700--Sobic009G226600 Sobic008G079300 Sobic008G079300 Sobic008G182700--Sobic008G079300 Sobic008G182700--Sobic005G169400 Sobic002G190500 Sobic002G190500 Sobic008G182700--Sobic002G190500 Sobic009G207600 Sobic009G207600 Sobic008G182700--Sobic009G207600 Sobic004G063400 Sobic004G063400 Sobic008G182700--Sobic004G063400 Sobic008G182700--Sobic002G087800 Sobic003G204501--Sobic004G008800 Sobic002G013000 Sobic002G013000 Sobic003G204501--Sobic002G013000 Sobic002G088900 Sobic002G088900 Sobic003G204501--Sobic002G088900 Sobic002G089100 Sobic002G089100 Sobic003G204501--Sobic002G089100 Sobic006G246600 Sobic006G246600 Sobic003G204501--Sobic006G246600 Sobic003G204501--Sobic007G109900 Sobic001G316400 Sobic001G316400 Sobic003G204501--Sobic001G316400 Sobic002G122800 Sobic002G122800 Sobic003G204501--Sobic002G122800 Sobic009G114000 Sobic009G114000 Sobic003G204501--Sobic009G114000
Octagon: transcription factors


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