Gene annotation
Transcriptome id Sobic.004G191901.1,Sobic.004G191901.2
Synonym -
Functional annotation -
UniProt A0A1Z5RN93 , A0A1Z5RN72
Pfam PF00319 PF01486
Panther DB PTHR11945 PTHR11945:SF144
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology K09264; MADS-box transcription factor, plant
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G57230 : AGAMOUS-like 16
RAP-DB (Rice) LOC_Os02g36924.1 : OsMADS27 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a037382 , Zm00025a031132 , Zm00025a016241 , Zm00025a031749 , Zm00025a037376 , Zm00025a011114 , Zm00025a048701 , Zm00025a037368 , Zm00025a044893
Brachypodium KQK15335 , KQK15334 , KQK15336 , KQK00037 , KQJ82998 , KQJ97593 , KQJ97594 , KQK23920
Barley HORVU1Hr1G051660.5 , HORVU1Hr1G051660.4 , HORVU1Hr1G051660.7 , HORVU1Hr1G051660.1 , HORVU1Hr1G051660.3 , HORVU1Hr1G051660.2 , HORVU1Hr1G051660.9 , HORVU1Hr1G051660.8 , HORVU2Hr1G080490.9 , HORVU2Hr1G080490.8 , HORVU2Hr1G080490.3 , HORVU2Hr1G080490.2 , HORVU2Hr1G080490.1 , HORVU2Hr1G080490.6 , HORVU2Hr1G080490.5 , HORVU2Hr1G080490.4 , HORVU2Hr1G080490.7 , HORVU1Hr1G051660.11 , HORVU6Hr1G073040.18 , HORVU6Hr1G032220.8 , HORVU6Hr1G032220.1 , HORVU6Hr1G073040.11 , HORVU6Hr1G032220.3 , HORVU6Hr1G032220.2 , HORVU6Hr1G032220.5 , HORVU6Hr1G032220.4 , HORVU6Hr1G032220.7 , HORVU6Hr1G032220.6 , HORVU1Hr1G051660.10 , HORVU1Hr1G051660.12 , HORVU6Hr1G073040.10 , HORVU6Hr1G073040.13 , HORVU6Hr1G073040.14 , HORVU6Hr1G073040.15 , HORVU6Hr1G073040.16 , HORVU6Hr1G073040.17 , HORVU6Hr1G073040.8 , HORVU6Hr1G073040.9 , HORVU6Hr1G073040.2 , HORVU6Hr1G073040.3 , HORVU2Hr1G080490.10 , HORVU6Hr1G073040.12
Wheat TraesCS6D02G147400 , TraesCS1D02G203300 , TraesCS1D02G203300 , TraesCS2A02G337900 , TraesCS5A02G515500 , TraesCS1D02G203400 , TraesCS6A02G292300 , TraesCS6A02G292300 , TraesCS2B02G344000 , TraesCS6B02G186700 , TraesCS1B02G214500 , TraesCS6A02G158100 , TraesCS4D02G341700 , TraesCS2D02G325000 , TraesCS6D02G273500 , TraesCS6D02G273500 , TraesCS4B02G346700 , TraesCS6A02G011700 , TraesCS6A02G011700 , TraesCS1A02G199900 , TraesCS6B02G322700 , TraesCS6B02G322700 , TraesCS1A02G199600 , TraesCS1A02G199600
Populus PNT20211 , PNT20210


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G016666 - -
2 Sobic.001G450900 UNE2, putative, expressed -
3 Sobic.010G035600 - -
4 Sobic.010G185250 - -
5 Sobic.007G065000 proton-dependent oligopeptide transport, putative, expressed -
6 Sobic.004G337850 - -
7 Sobic.007G145801 - K02712: photosystem II PsbK protein
8 Sobic.006G057100 - -
9 Sobic.009G101500 - -
10 Sobic.004G077700 - -
11 Sobic.005G139750 - -
12 Sobic.004G098100 expressed protein -
13 Sobic.006G183100 RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed K10755: replication factor C subunit 2/4
14 Sobic.009G123100 - K02710: photosystem II PsbI protein
K02712: photosystem II PsbK protein
15 Sobic.004G019550 - -
16 Sobic.006G131700 CRS1/YhbY domain containing protein, putative, expressed -
17 Sobic.003G218950 - -
18 Sobic.003G169000 - K02718: photosystem II PsbT protein
19 Sobic.001G022700 cytochrome P450, putative, expressed -
20 Sobic.010G206600 NADPH-dependent oxidoreductase, putative, expressed -


Gene co-expression network
sample Sobic004G191901 Sobic004G191901 Sobic009G016666 Sobic009G016666 Sobic004G191901--Sobic009G016666 Sobic001G450900 Sobic001G450900 Sobic004G191901--Sobic001G450900 Sobic010G035600 Sobic010G035600 Sobic004G191901--Sobic010G035600 Sobic010G185250 Sobic010G185250 Sobic004G191901--Sobic010G185250 Sobic007G065000 Sobic007G065000 Sobic004G191901--Sobic007G065000 Sobic004G337850 Sobic004G337850 Sobic004G191901--Sobic004G337850 Sobic007G145801 Sobic007G145801 Sobic004G191901--Sobic007G145801 Sobic006G057100 Sobic006G057100 Sobic004G191901--Sobic006G057100 Sobic009G101500 Sobic009G101500 Sobic004G191901--Sobic009G101500 Sobic009G016666--Sobic007G145801 Sobic009G016666--Sobic004G337850 Sobic009G016666--Sobic010G035600 Sobic005G139750 Sobic005G139750 Sobic009G016666--Sobic005G139750 Sobic009G016666--Sobic007G065000 Sobic009G123100 Sobic009G123100 Sobic009G016666--Sobic009G123100 Sobic009G016666--Sobic001G450900 Sobic001G022700 Sobic001G022700 Sobic009G016666--Sobic001G022700 Sobic006G183100 Sobic006G183100 Sobic009G016666--Sobic006G183100 Sobic004G019550 Sobic004G019550 Sobic001G450900--Sobic004G019550 Sobic001G154000 Sobic001G154000 Sobic001G450900--Sobic001G154000 Sobic001G450900--Sobic010G035600 Sobic003G286450 Sobic003G286450 Sobic001G450900--Sobic003G286450 Sobic001G476800 Sobic001G476800 Sobic001G450900--Sobic001G476800 Sobic001G535850 Sobic001G535850 Sobic001G450900--Sobic001G535850 Sobic001G450900--Sobic007G065000 Sobic001G450900--Sobic005G139750 Sobic008G171200 Sobic008G171200 Sobic001G450900--Sobic008G171200 Sobic010G035600--Sobic007G065000 Sobic001G182900 Sobic001G182900 Sobic010G035600--Sobic001G182900 Sobic010G035600--Sobic004G337850 Sobic010G035600--Sobic010G185250 SobicK029400 SobicK029400 Sobic010G035600--SobicK029400 Sobic010G035600--Sobic004G019550 Sobic010G035600--Sobic001G476800 Sobic003G172500 Sobic003G172500 Sobic010G035600--Sobic003G172500 Sobic010G206600 Sobic010G206600 Sobic010G035600--Sobic010G206600 Sobic002G165200 Sobic002G165200 Sobic010G185250--Sobic002G165200 Sobic010G185250--Sobic001G182900 Sobic010G185250--Sobic010G035600 Sobic010G185250--SobicK029400 Sobic003G369533 Sobic003G369533 Sobic010G185250--Sobic003G369533 Sobic010G185250--Sobic006G057100 Sobic003G218950 Sobic003G218950 Sobic010G185250--Sobic003G218950 Sobic003G168800 Sobic003G168800 Sobic010G185250--Sobic003G168800 Sobic010G185250--Sobic003G172500 Sobic007G065000--Sobic010G035600 Sobic003G169000 Sobic003G169000 Sobic007G065000--Sobic003G169000 Sobic003G169100 Sobic003G169100 Sobic007G065000--Sobic003G169100 Sobic007G065000--Sobic003G369533 Sobic007G065000--SobicK029400 Sobic007G065000--Sobic007G145801 Sobic007G065000--Sobic010G206600 Sobic003G352000 Sobic003G352000 Sobic007G065000--Sobic003G352000 Sobic003G168200 Sobic003G168200 Sobic007G065000--Sobic003G168200 Sobic006G057050 Sobic006G057050 Sobic004G337850--Sobic006G057050 Sobic004G337850--Sobic009G123100 Sobic004G337850--Sobic003G352000 Sobic004G337850--Sobic010G035600 Sobic004G337850--Sobic007G145801 Sobic004G337850--Sobic003G172500 Sobic004G337850--SobicK029400 Sobic004G337850--Sobic003G168200 Sobic009G148950 Sobic009G148950 Sobic004G337850--Sobic009G148950 Sobic007G145801--Sobic009G123100 Sobic007G145801--Sobic003G169100 Sobic007G145801--Sobic005G139750 Sobic006G124800 Sobic006G124800 Sobic007G145801--Sobic006G124800 SobicK032300 SobicK032300 Sobic007G145801--SobicK032300 Sobic007G145801--Sobic010G206600 Sobic007G145801--Sobic006G183100 Sobic007G145801--Sobic009G148950 Sobic006G124700 Sobic006G124700 Sobic007G145801--Sobic006G124700 Sobic006G057100--Sobic003G218950 Sobic006G057100--Sobic003G352000 Sobic007G085900 Sobic007G085900 Sobic006G057100--Sobic007G085900 Sobic006G057100--SobicK029400 Sobic006G131700 Sobic006G131700 Sobic006G057100--Sobic006G131700 Sobic003G113100 Sobic003G113100 Sobic006G057100--Sobic003G113100 Sobic006G057100--Sobic003G369533 Sobic003G160400 Sobic003G160400 Sobic006G057100--Sobic003G160400 Sobic006G057100--Sobic010G185250 Sobic004G077700 Sobic004G077700 Sobic009G101500--Sobic004G077700 Sobic009G101500--Sobic005G139750 Sobic009G101500--Sobic001G022700 Sobic009G101500--Sobic006G131700 Sobic009G101500--Sobic007G145801 Sobic001G094550 Sobic001G094550 Sobic009G101500--Sobic001G094550 Sobic009G101500--Sobic004G337850 Sobic001G182700 Sobic001G182700 Sobic009G101500--Sobic001G182700 Sobic001G182800 Sobic001G182800 Sobic009G101500--Sobic001G182800
Octagon: transcription factors


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