Gene annotation
Transcriptome id Sobic.004G249200.1
Synonym
Functional annotation NADPH-dependent oxidoreductase, putative, expressed
UniProt A0A194YRJ8 , Q09EK3 , A0A109NDC3 , Q33066
Pfam PF00361
Panther DB PTHR22773 PTHR22773:SF50
NCBI CDD -
KEGG Orthology K03883; NADH-ubiquinone oxidoreductase chain 5
Gene Ontology -


Orthologs (automatic annotation)
TAIR ATMG00060 : NADH dehydrogenase subunit 5C
RAP-DB (Rice) LOC_Os10g21418.1 : NADPH-dependent oxidoreductase, putative, expressed
MaizeGDB (Corn) Zm00025a057958 , Zm00025a057529 , Zm00025a058105
Brachypodium -
Barley HORVU0Hr1G034160.1 , HORVU3Hr1G004710.1 , HORVU4Hr1G023920.1 , HORVU4Hr1G024000.1 , HORVU5Hr1G072300.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G108900 pentatricopeptide, putative, expressed -
2 Sobic.005G222000 protein transporter, putative, expressed -
3 Sobic.004G357600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Sucrose synthase genes(PubMedID : 24456189)@sucrose synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose synthase, putative, expressed K00695: sucrose synthase
4 Sobic.009G011100 SCARECROW, putative, expressed -
5 Sobic.004G138100 expressed protein -
6 Sobic.002G290900 no apical meristem protein, putative, expressed -
7 Sobic.001G296600 - -
8 Sobic.009G011000 SCARECROW, putative, expressed -
9 Sobic.009G011200 SCARECROW, putative, expressed -
10 Sobic.001G104050 - -
11 Sobic.002G053300 mla1, putative, expressed -
12 Sobic.008G085800 - -
13 Sobic.007G225050 - -
14 Sobic.004G203633 - -
15 Sobic.003G276700 "domain confirmed by Pfam database, expressed in flower, expression induced by IAA and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
16 Sobic.007G038200 lectin-like receptor kinase, putative, expressed -
17 Sobic.007G137100 - -
18 Sobic.007G174500 carrier, putative, expressed -
19 Sobic.002G117800 - -
20 Sobic.005G182100 Leucine Rich Repeat family protein, expressed -


Gene co-expression network
sample Sobic004G249200 Sobic004G249200 Sobic006G108900 Sobic006G108900 Sobic004G249200--Sobic006G108900 Sobic005G222000 Sobic005G222000 Sobic004G249200--Sobic005G222000 Sobic004G357600 Sobic004G357600 Sobic004G249200--Sobic004G357600 Sobic009G011100 Sobic009G011100 Sobic004G249200--Sobic009G011100 Sobic004G138100 Sobic004G138100 Sobic004G249200--Sobic004G138100 Sobic002G290900 Sobic002G290900 Sobic004G249200--Sobic002G290900 Sobic001G296600 Sobic001G296600 Sobic004G249200--Sobic001G296600 Sobic009G011000 Sobic009G011000 Sobic004G249200--Sobic009G011000 Sobic009G011200 Sobic009G011200 Sobic004G249200--Sobic009G011200 Sobic006G108900--Sobic004G249200 Sobic006G108900--Sobic009G011100 Sobic006G108900--Sobic005G222000 Sobic006G108900--Sobic009G011000 Sobic007G044350 Sobic007G044350 Sobic006G108900--Sobic007G044350 Sobic006G108900--Sobic004G357600 Sobic006G108900--Sobic009G011200 Sobic006G108900--Sobic001G296600 Sobic006G108900--Sobic004G138100 Sobic005G222000--Sobic004G249200 Sobic005G222000--Sobic006G108900 Sobic005G222000--Sobic004G357600 Sobic005G222000--Sobic009G011100 Sobic003G267600 Sobic003G267600 Sobic005G222000--Sobic003G267600 Sobic005G222000--Sobic001G296600 Sobic010G155000 Sobic010G155000 Sobic005G222000--Sobic010G155000 Sobic009G192400 Sobic009G192400 Sobic005G222000--Sobic009G192400 Sobic001G036400 Sobic001G036400 Sobic005G222000--Sobic001G036400 Sobic004G357600--Sobic004G249200 Sobic004G357600--Sobic001G296600 Sobic001G104050 Sobic001G104050 Sobic004G357600--Sobic001G104050 Sobic004G357600--Sobic005G222000 Sobic007G174500 Sobic007G174500 Sobic004G357600--Sobic007G174500 Sobic007G174000 Sobic007G174000 Sobic004G357600--Sobic007G174000 Sobic004G357600--Sobic004G138100 Sobic010G265400 Sobic010G265400 Sobic004G357600--Sobic010G265400 Sobic004G357600--Sobic009G011100 Sobic009G011100--Sobic009G011000 Sobic010G142501 Sobic010G142501 Sobic009G011100--Sobic010G142501 Sobic009G011100--Sobic004G138100 Sobic009G011100--Sobic007G174500 Sobic009G011100--Sobic009G011200 Sobic007G190600 Sobic007G190600 Sobic009G011100--Sobic007G190600 Sobic009G011100--Sobic004G249200 Sobic009G011100--Sobic006G108900 Sobic007G190466 Sobic007G190466 Sobic009G011100--Sobic007G190466 Sobic008G085800 Sobic008G085800 Sobic004G138100--Sobic008G085800 Sobic004G127766 Sobic004G127766 Sobic004G138100--Sobic004G127766 Sobic005G231000 Sobic005G231000 Sobic004G138100--Sobic005G231000 Sobic001G431600 Sobic001G431600 Sobic004G138100--Sobic001G431600 Sobic004G138100--Sobic007G190600 Sobic004G138100--Sobic007G174500 Sobic004G310800 Sobic004G310800 Sobic004G138100--Sobic004G310800 Sobic002G154450 Sobic002G154450 Sobic004G138100--Sobic002G154450 Sobic010G254401 Sobic010G254401 Sobic004G138100--Sobic010G254401 Sobic002G117800 Sobic002G117800 Sobic002G290900--Sobic002G117800 Sobic003G024450 Sobic003G024450 Sobic002G290900--Sobic003G024450 Sobic004G092950 Sobic004G092950 Sobic002G290900--Sobic004G092950 Sobic004G023800 Sobic004G023800 Sobic002G290900--Sobic004G023800 Sobic008G060800 Sobic008G060800 Sobic002G290900--Sobic008G060800 Sobic004G143550 Sobic004G143550 Sobic002G290900--Sobic004G143550 Sobic006G065000 Sobic006G065000 Sobic002G290900--Sobic006G065000 Sobic010G023132 Sobic010G023132 Sobic002G290900--Sobic010G023132 Sobic003G388201 Sobic003G388201 Sobic002G290900--Sobic003G388201 Sobic001G296600--Sobic001G104050 Sobic001G296600--Sobic007G044350 Sobic004G223350 Sobic004G223350 Sobic001G296600--Sobic004G223350 Sobic001G296600--Sobic004G357600 Sobic001G296600--Sobic003G267600 Sobic007G173901 Sobic007G173901 Sobic001G296600--Sobic007G173901 Sobic004G205900 Sobic004G205900 Sobic001G296600--Sobic004G205900 Sobic003G276700 Sobic003G276700 Sobic001G296600--Sobic003G276700 Sobic002G008701 Sobic002G008701 Sobic001G296600--Sobic002G008701 Sobic009G011000--Sobic009G011100 Sobic009G011000--Sobic009G011200 Sobic001G208133 Sobic001G208133 Sobic009G011000--Sobic001G208133 Sobic009G011000--Sobic007G174500 Sobic009G011000--Sobic010G142501 Sobic009G011000--Sobic004G138100 Sobic003G311300 Sobic003G311300 Sobic009G011000--Sobic003G311300 Sobic009G011000--Sobic007G190600 Sobic004G079400 Sobic004G079400 Sobic009G011000--Sobic004G079400 Sobic009G011200--Sobic009G011000 Sobic009G011200--Sobic009G011100 Sobic001G372400 Sobic001G372400 Sobic009G011200--Sobic001G372400 Sobic008G187450 Sobic008G187450 Sobic009G011200--Sobic008G187450 Sobic009G011200--Sobic001G208133 Sobic009G011200--Sobic002G117800 Sobic007G043050 Sobic007G043050 Sobic009G011200--Sobic007G043050 Sobic005G198150 Sobic005G198150 Sobic009G011200--Sobic005G198150 Sobic004G352750 Sobic004G352750 Sobic009G011200--Sobic004G352750
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.