Gene annotation
Transcriptome id Sobic.004G264200.1
Synonym Sb04g030230, RHD6
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt C5Y085
Pfam PF00010
Panther DB PTHR16223 PTHR16223:SF31
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G66470 : ROOT HAIR DEFECTIVE6
RAP-DB (Rice) LOC_Os02g48060.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021757
Brachypodium -
Barley HORVU6Hr1G069690.1 , HORVU6Hr1G069690.2 , HORVU6Hr1G069690.3
Wheat TraesCS6D02G256500 , TraesCS6D02G256300 , TraesCS6B02G303500 , TraesCS6A02G276100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G124200 expressed protein -
2 Sobic.002G232900 helix-loop-helix DNA-binding protein, putative, expressed -
3 Sobic.005G105600 stripe rust resistance protein Yr10, putative, expressed K13457: RPM1, disease resistance protein RPM1
4 Sobic.003G019400 expressed protein -
5 Sobic.009G208600 POEI52 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
6 Sobic.006G013300 receptor-like protein kinase 2 precursor, putative, expressed -
7 Sobic.001G197800 - -
8 Sobic.006G073800 DUF623 domain containing protein, expressed -
9 Sobic.004G214300 AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
10 Sobic.009G102400 "domain confirmed by Pfam database, expressed in root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
11 Sobic.004G347500 2-phosphoglycerate kinase-related, putative, expressed -
12 Sobic.010G090100 phosphoglycerate mutase, putative, expressed K01834: PGAM, 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
13 Sobic.001G261400 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
14 Sobic.004G029900 "transporter for metal ion into cytoplasm, an influx transporter for Al"(PubMedID : 28716414)@metal transporter Nramp6, putative, expressed -
15 Sobic.002G218600 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed -
16 Sobic.002G230900 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
17 Sobic.004G029450 - -
18 Sobic.001G386600 homeobox domain containing protein, expressed -
19 Sobic.002G177600 expressed protein -
20 Sobic.005G021000 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage


Gene co-expression network
sample Sobic004G264200 Sobic004G264200 Sobic006G124200 Sobic006G124200 Sobic004G264200--Sobic006G124200 Sobic002G232900 Sobic002G232900 Sobic004G264200--Sobic002G232900 Sobic005G105600 Sobic005G105600 Sobic004G264200--Sobic005G105600 Sobic003G019400 Sobic003G019400 Sobic004G264200--Sobic003G019400 Sobic009G208600 Sobic009G208600 Sobic004G264200--Sobic009G208600 Sobic006G013300 Sobic006G013300 Sobic004G264200--Sobic006G013300 Sobic001G197800 Sobic001G197800 Sobic004G264200--Sobic001G197800 Sobic006G073800 Sobic006G073800 Sobic004G264200--Sobic006G073800 Sobic004G214300 Sobic004G214300 Sobic004G264200--Sobic004G214300 Sobic009G102400 Sobic009G102400 Sobic006G124200--Sobic009G102400 Sobic006G124200--Sobic004G214300 Sobic001G261400 Sobic001G261400 Sobic006G124200--Sobic001G261400 Sobic006G124200--Sobic005G105600 Sobic006G124200--Sobic006G013300 Sobic010G134900 Sobic010G134900 Sobic006G124200--Sobic010G134900 Sobic006G124200--Sobic003G019400 Sobic010G177300 Sobic010G177300 Sobic006G124200--Sobic010G177300 Sobic003G395200 Sobic003G395200 Sobic006G124200--Sobic003G395200 Sobic002G232900--Sobic009G208600 Sobic002G232900--Sobic006G013300 Sobic005G021000 Sobic005G021000 Sobic002G232900--Sobic005G021000 Sobic001G254800 Sobic001G254800 Sobic002G232900--Sobic001G254800 Sobic003G419500 Sobic003G419500 Sobic002G232900--Sobic003G419500 Sobic004G347500 Sobic004G347500 Sobic002G232900--Sobic004G347500 Sobic004G029900 Sobic004G029900 Sobic002G232900--Sobic004G029900 Sobic002G240000 Sobic002G240000 Sobic002G232900--Sobic002G240000 Sobic002G232900--Sobic005G105600 Sobic005G105600--Sobic006G013300 Sobic005G105600--Sobic009G208600 Sobic005G105600--Sobic004G029900 Sobic005G105600--Sobic002G232900 Sobic005G105600--Sobic004G347500 Sobic005G105600--Sobic003G419500 Sobic005G105600--Sobic005G021000 Sobic005G105600--Sobic006G124200 Sobic001G508200 Sobic001G508200 Sobic005G105600--Sobic001G508200 Sobic003G019400--Sobic004G214300 Sobic003G419300 Sobic003G419300 Sobic003G019400--Sobic003G419300 Sobic010G090100 Sobic010G090100 Sobic003G019400--Sobic010G090100 Sobic003G019400--Sobic001G197800 Sobic003G019400--Sobic001G261400 Sobic003G019400--Sobic006G124200 Sobic003G019400--Sobic009G102400 Sobic004G029450 Sobic004G029450 Sobic003G019400--Sobic004G029450 Sobic002G091000 Sobic002G091000 Sobic003G019400--Sobic002G091000 Sobic009G208600--Sobic006G013300 Sobic009G208600--Sobic005G105600 Sobic009G208600--Sobic002G232900 Sobic009G208600--Sobic003G419500 Sobic009G208600--Sobic004G029900 Sobic009G208600--Sobic005G021000 Sobic009G208600--Sobic004G347500 Sobic009G208600--Sobic001G254800 Sobic009G208600--Sobic002G240000 Sobic006G013300--Sobic009G208600 Sobic006G013300--Sobic005G105600 Sobic006G013300--Sobic002G232900 Sobic006G013300--Sobic004G029900 Sobic006G013300--Sobic001G508200 Sobic006G013300--Sobic003G419500 Sobic006G013300--Sobic005G021000 Sobic006G013300--Sobic004G347500 Sobic006G013300--Sobic002G240000 Sobic008G075350 Sobic008G075350 Sobic001G197800--Sobic008G075350 Sobic001G386600 Sobic001G386600 Sobic001G197800--Sobic001G386600 Sobic001G197800--Sobic010G090100 Sobic001G197800--Sobic003G019400 Sobic008G170500 Sobic008G170500 Sobic001G197800--Sobic008G170500 Sobic001G197800--Sobic004G347500 Sobic001G296700 Sobic001G296700 Sobic001G197800--Sobic001G296700 Sobic001G197800--Sobic006G013300 Sobic001G197800--Sobic002G232900 Sobic006G255300 Sobic006G255300 Sobic006G073800--Sobic006G255300 Sobic004G263700 Sobic004G263700 Sobic006G073800--Sobic004G263700 Sobic002G230900 Sobic002G230900 Sobic006G073800--Sobic002G230900 Sobic006G073800--Sobic001G261400 Sobic001G276800 Sobic001G276800 Sobic006G073800--Sobic001G276800 Sobic002G218600 Sobic002G218600 Sobic006G073800--Sobic002G218600 Sobic001G304800 Sobic001G304800 Sobic006G073800--Sobic001G304800 Sobic006G016700 Sobic006G016700 Sobic006G073800--Sobic006G016700 Sobic004G311600 Sobic004G311600 Sobic006G073800--Sobic004G311600 Sobic004G214300--Sobic009G102400 Sobic004G214300--Sobic006G124200 Sobic010G155100 Sobic010G155100 Sobic004G214300--Sobic010G155100 Sobic004G214300--Sobic010G134900 Sobic004G214300--Sobic001G261400 Sobic004G214300--Sobic003G419300 Sobic004G214300--Sobic003G019400 Sobic002G239700 Sobic002G239700 Sobic004G214300--Sobic002G239700 Sobic004G112200 Sobic004G112200 Sobic004G214300--Sobic004G112200
Octagon: transcription factors


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