Gene annotation
| Transcriptome id | Sobic.004G281600.2,Sobic.004G281600.3 |
|---|---|
| Synonym | Sb04g031805 |
| Functional annotation | uncharacterized mscS family protein, putative, expressed |
| UniProt | A0A194YRZ3 |
| Pfam | PF00924 |
| Panther DB | PTHR30566 PTHR30566:SF5 |
| NCBI CDD | - |
| KEGG Orthology | K16052; ynaI, MscS family membrane protein |
| Gene Ontology | GO:0016020; membrane |
Orthologs (automatic annotation)
| TAIR | AT4G00290 : Mechanosensitive ion channel protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g45690.1 : uncharacterized mscS family protein, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G081800 | bZIP transcription factor, putative, expressed | K14432: ABA responsive element binding factor |
| 2 | Sobic.001G114600 | expressed protein | - |
| 3 | Sobic.002G122900 | lysine ketoglutarate reductase trans-splicing related 1, putative, expressed | - |
| 4 | Sobic.006G057300 | expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@leucoanthocyanidin dioxygenase, putative, expressed | - |
| 5 | Sobic.002G384100 | expressed protein | - |
| 6 | Sobic.004G101100 | STIGL3 - Stigma-specific Stig1 family protein precursor, putative, expressed | - |
| 7 | Sobic.002G241700 | phosphatidylinositol transfer, putative, expressed | - |
| 8 | Sobic.009G194100 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 9 | Sobic.002G316900 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@aconitate hydratase protein, putative, expressed | K01681: ACO, aconitate hydratase |
| 10 | Sobic.010G101300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@dehydrogenase E1 component domain containing protein, expressed | K00161: PDHA, pyruvate dehydrogenase E1 component alpha subunit |
| 11 | Sobic.006G104000 | ethylene-insensitive 3, putative, expressed | K14514: ethylene-insensitive protein 3 |
| 12 | Sobic.003G292400 | NADP-dependent malic enzyme(PubMedID : 26186930)@NADP-malic enzyme(PubMedID : 26904072)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@C4 carbon fixation(PubMedID : 28620409)@NADP-dependent malic enzyme, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 13 | Sobic.004G233900 | CRAL/TRIO domain containing protein, expressed | - |
| 14 | Sobic.003G194400 | HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 15 | Sobic.001G200700 | expressed protein | - |
| 16 | Sobic.003G011400 | similar to Os01g0225600 protein(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed | - |
| 17 | Sobic.009G046200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@peripheral-type benzodiazepine receptor, putative, expressed | - |
| 18 | Sobic.006G114700 | Up-reguralion under drought(PubMedID : 24916767)@phosphofructokinase 2("PubMedID : 26759170,PubMedID : 24597475")@phosphofructokinase, putative, expressed | K00850: pfkA, 6-phosphofructokinase 1 |
| 19 | Sobic.003G024600 | CAMK_KIN1/SNF1/Nim1_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 20 | Sobic.002G132500 | - | - |
Gene co-expression network
Octagon: transcription factors
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