Gene annotation
Transcriptome id Sobic.004G287400.1
Synonym MSL5, Sb04g032300
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
uncharacterized mscS family protein, putative, expressed
UniProt C5Y1C6
Pfam PF00924
Panther DB PTHR31618 PTHR31618:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT3G14810 : mechanosensitive channel of small conductance-like 5
RAP-DB (Rice) LOC_Os02g44770.1 : uncharacterized mscS family protein, putative, expressed
MaizeGDB (Corn) Zm00025a010221 , Zm00025a021457 , Zm00025a033992 , Zm00025a032262 , Zm00025a056822
Brachypodium KQJ84035 , KQK00700
Barley HORVU4Hr1G083980.8 , HORVU4Hr1G083980.9 , HORVU4Hr1G083980.6 , HORVU4Hr1G083980.7 , HORVU4Hr1G083980.4 , HORVU4Hr1G083980.5 , HORVU4Hr1G083980.2 , HORVU4Hr1G083980.3 , HORVU4Hr1G083980.1 , HORVU6Hr1G064470.7 , HORVU6Hr1G064470.6 , HORVU6Hr1G064470.5 , HORVU6Hr1G064470.4 , HORVU6Hr1G064470.3 , HORVU6Hr1G064470.2 , HORVU6Hr1G064470.1 , HORVU6Hr1G014650.1 , HORVU6Hr1G014650.2 , HORVU6Hr1G014650.5 , HORVU6Hr1G014650.6 , HORVU6Hr1G014650.3 , HORVU6Hr1G014650.4 , HORVU4Hr1G083980.14 , HORVU4Hr1G083980.15 , HORVU4Hr1G083980.16 , HORVU4Hr1G083980.17 , HORVU4Hr1G083980.10 , HORVU4Hr1G083980.11 , HORVU4Hr1G083980.12 , HORVU4Hr1G083980.13 , HORVU4Hr1G083980.18 , HORVU4Hr1G083980.19 , HORVU4Hr1G083980.20
Wheat TraesCS4D02G337000 , TraesCS5A02G510400 , TraesCS6B02G272700 , TraesCS6B02G272700 , TraesCS6A02G252600 , TraesCS6A02G252600 , TraesCS4B02G340900 , TraesCS5A02G510300 , TraesCS5A02G510300 , TraesCS1A02G021200 , TraesCS1D02G020800 , TraesCS6D02G234100 , TraesCS4B02G341000
Populus PNT33062 , PNT33061


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G170100 AP2 domain containing protein, expressed -
2 Sobic.002G039800 EDM2, putative, expressed -
3 Sobic.002G302900 calmodulin-binding heat-shock protein, putative, expressed -
4 Sobic.006G148700 kinase, pfkB family, putative, expressed K00856: E2.7.1.20, adenosine kinase
5 Sobic.003G188600 expressed protein -
6 Sobic.001G217300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor 18, putative, expressed -
7 Sobic.003G390700 glycosyltransferase, putative, expressed -
8 Sobic.003G204200 AP2/B3 transcription factor(PubMedID : 27016024)@B3 DNA binding domain containing protein, expressed -
9 Sobic.003G281800 membrane associated DUF588 domain containing protein, putative, expressed -
10 Sobic.001G333900 Diacylglycerol kinase 1 DGK1 (At)(PubMedID : 27208977)@diacylglycerol kinase 1, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
11 Sobic.002G076100 transcription factor, putative, expressed K09060: plant G-box-binding factor
12 Sobic.007G121650 - -
13 Sobic.007G121600 - -
14 Sobic.003G354000 similar to Putative uncharacterized protein(PubMedID : 29862293)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
15 Sobic.001G118800 homologous-pairing protein meu13, putative, expressed K06695: 26S proteasome regulatory subunit, ATPase 3, interacting protein
16 Sobic.004G146300 AP003256-AK101847 - NBS/LRR genes that are S-rich,divergent TIR, divergent NBS, expressed -
17 Sobic.002G203500 protein binding protein, putative, expressed -
18 Sobic.002G345800 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.005G150900 growth regulating factor protein, putative, expressed -
20 Sobic.003G266600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CPuORF25 - conserved peptide uORF-containing transcript, expressed K05929: E2.1.1.103, phosphoethanolamine N-methyltransferase


Gene co-expression network
sample Sobic004G287400 Sobic004G287400 Sobic006G170100 Sobic006G170100 Sobic004G287400--Sobic006G170100 Sobic002G039800 Sobic002G039800 Sobic004G287400--Sobic002G039800 Sobic002G302900 Sobic002G302900 Sobic004G287400--Sobic002G302900 Sobic006G148700 Sobic006G148700 Sobic004G287400--Sobic006G148700 Sobic003G188600 Sobic003G188600 Sobic004G287400--Sobic003G188600 Sobic001G217300 Sobic001G217300 Sobic004G287400--Sobic001G217300 Sobic003G390700 Sobic003G390700 Sobic004G287400--Sobic003G390700 Sobic003G204200 Sobic003G204200 Sobic004G287400--Sobic003G204200 Sobic003G281800 Sobic003G281800 Sobic004G287400--Sobic003G281800 Sobic006G170100--Sobic003G390700 Sobic007G137101 Sobic007G137101 Sobic006G170100--Sobic007G137101 Sobic002G255600 Sobic002G255600 Sobic006G170100--Sobic002G255600 Sobic001G158200 Sobic001G158200 Sobic006G170100--Sobic001G158200 Sobic002G343600 Sobic002G343600 Sobic006G170100--Sobic002G343600 Sobic010G255000 Sobic010G255000 Sobic006G170100--Sobic010G255000 Sobic010G048600 Sobic010G048600 Sobic006G170100--Sobic010G048600 Sobic006G076000 Sobic006G076000 Sobic006G170100--Sobic006G076000 Sobic006G170100--Sobic003G204200 Sobic010G262100 Sobic010G262100 Sobic002G039800--Sobic010G262100 Sobic008G063600 Sobic008G063600 Sobic002G039800--Sobic008G063600 Sobic002G052700 Sobic002G052700 Sobic002G039800--Sobic002G052700 Sobic003G435500 Sobic003G435500 Sobic002G039800--Sobic003G435500 Sobic003G123100 Sobic003G123100 Sobic002G039800--Sobic003G123100 Sobic010G188000 Sobic010G188000 Sobic002G039800--Sobic010G188000 Sobic004G038100 Sobic004G038100 Sobic002G039800--Sobic004G038100 Sobic010G138900 Sobic010G138900 Sobic002G039800--Sobic010G138900 Sobic001G397800 Sobic001G397800 Sobic002G039800--Sobic001G397800 Sobic006G267600 Sobic006G267600 Sobic002G302900--Sobic006G267600 Sobic002G302900--Sobic002G052700 Sobic002G302900--Sobic002G039800 Sobic001G051700 Sobic001G051700 Sobic002G302900--Sobic001G051700 Sobic001G384000 Sobic001G384000 Sobic002G302900--Sobic001G384000 Sobic002G048700 Sobic002G048700 Sobic002G302900--Sobic002G048700 Sobic007G168300 Sobic007G168300 Sobic002G302900--Sobic007G168300 Sobic003G042400 Sobic003G042400 Sobic002G302900--Sobic003G042400 Sobic010G186700 Sobic010G186700 Sobic002G302900--Sobic010G186700 Sobic009G002000 Sobic009G002000 Sobic006G148700--Sobic009G002000 Sobic001G168500 Sobic001G168500 Sobic006G148700--Sobic001G168500 Sobic010G169300 Sobic010G169300 Sobic006G148700--Sobic010G169300 Sobic005G084900 Sobic005G084900 Sobic006G148700--Sobic005G084900 Sobic004G282100 Sobic004G282100 Sobic006G148700--Sobic004G282100 Sobic008G040700 Sobic008G040700 Sobic006G148700--Sobic008G040700 Sobic002G280900 Sobic002G280900 Sobic006G148700--Sobic002G280900 Sobic001G294600 Sobic001G294600 Sobic006G148700--Sobic001G294600 Sobic003G410400 Sobic003G410400 Sobic006G148700--Sobic003G410400 Sobic001G242500 Sobic001G242500 Sobic003G188600--Sobic001G242500 Sobic002G112000 Sobic002G112000 Sobic003G188600--Sobic002G112000 Sobic003G370300 Sobic003G370300 Sobic003G188600--Sobic003G370300 Sobic002G317700 Sobic002G317700 Sobic003G188600--Sobic002G317700 Sobic003G259300 Sobic003G259300 Sobic003G188600--Sobic003G259300 Sobic007G121650 Sobic007G121650 Sobic003G188600--Sobic007G121650 Sobic003G188600--Sobic008G063600 Sobic002G335500 Sobic002G335500 Sobic003G188600--Sobic002G335500 Sobic004G078500 Sobic004G078500 Sobic003G188600--Sobic004G078500 Sobic001G163300 Sobic001G163300 Sobic001G217300--Sobic001G163300 Sobic005G202000 Sobic005G202000 Sobic001G217300--Sobic005G202000 Sobic003G031500 Sobic003G031500 Sobic001G217300--Sobic003G031500 Sobic001G152600 Sobic001G152600 Sobic001G217300--Sobic001G152600 Sobic001G316900 Sobic001G316900 Sobic001G217300--Sobic001G316900 Sobic004G262600 Sobic004G262600 Sobic001G217300--Sobic004G262600 Sobic003G356300 Sobic003G356300 Sobic001G217300--Sobic003G356300 Sobic003G223900 Sobic003G223900 Sobic001G217300--Sobic003G223900 Sobic006G203400 Sobic006G203400 Sobic001G217300--Sobic006G203400 Sobic003G250100 Sobic003G250100 Sobic003G390700--Sobic003G250100 Sobic002G196500 Sobic002G196500 Sobic003G390700--Sobic002G196500 Sobic003G390700--Sobic006G170100 Sobic003G390700--Sobic010G255000 Sobic003G390700--Sobic003G204200 Sobic007G201900 Sobic007G201900 Sobic003G390700--Sobic007G201900 Sobic003G390700--Sobic002G112000 Sobic007G121600 Sobic007G121600 Sobic003G390700--Sobic007G121600 Sobic003G244000 Sobic003G244000 Sobic003G390700--Sobic003G244000 Sobic002G237000 Sobic002G237000 Sobic003G204200--Sobic002G237000 Sobic004G321400 Sobic004G321400 Sobic003G204200--Sobic004G321400 Sobic001G105800 Sobic001G105800 Sobic003G204200--Sobic001G105800 Sobic003G204200--Sobic010G255000 Sobic004G035800 Sobic004G035800 Sobic003G204200--Sobic004G035800 Sobic009G172950 Sobic009G172950 Sobic003G204200--Sobic009G172950 Sobic010G092400 Sobic010G092400 Sobic003G204200--Sobic010G092400 Sobic004G190500 Sobic004G190500 Sobic003G204200--Sobic004G190500 Sobic002G223900 Sobic002G223900 Sobic003G204200--Sobic002G223900 Sobic004G343800 Sobic004G343800 Sobic003G281800--Sobic004G343800 Sobic002G239900 Sobic002G239900 Sobic003G281800--Sobic002G239900 Sobic008G119400 Sobic008G119400 Sobic003G281800--Sobic008G119400 Sobic001G424400 Sobic001G424400 Sobic003G281800--Sobic001G424400 Sobic001G241600 Sobic001G241600 Sobic003G281800--Sobic001G241600 Sobic006G206800 Sobic006G206800 Sobic003G281800--Sobic006G206800 Sobic004G146300 Sobic004G146300 Sobic003G281800--Sobic004G146300 Sobic010G186500 Sobic010G186500 Sobic003G281800--Sobic010G186500 Sobic009G161900 Sobic009G161900 Sobic003G281800--Sobic009G161900
Octagon: transcription factors


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