Gene annotation
Transcriptome id Sobic.006G170100.1
Synonym
Functional annotation AP2 domain containing protein, expressed
UniProt A0A1Z5RES4
Pfam PF00847
Panther DB PTHR31985 PTHR31985:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT2G44940 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os04g46440.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035855 , Zm00025a022970 , Zm00025a010316 , Zm00025a010312 , Zm00025a032201 , Zm00025a020882 , Zm00025a020881 , Zm00025a056876 , Zm00025a056875
Brachypodium KQK03191 , KQK00606 , KQK00605 , KQJ83929 , KQJ94139
Barley HORVU0Hr1G016370.1 , HORVU0Hr1G018290.1 , HORVU3Hr1G026950.1 , HORVU0Hr1G018280.1 , HORVU0Hr1G030500.1 , HORVU0Hr1G018240.1 , HORVU6Hr1G062940.1 , HORVU2Hr1G097850.6 , HORVU2Hr1G097850.5 , HORVU2Hr1G097850.4 , HORVU2Hr1G097850.3 , HORVU2Hr1G097850.1 , HORVU3Hr1G086870.2 , HORVU3Hr1G086870.1
Wheat -
Populus -


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cDNA sequences
Sobic.006G170100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G390700 glycosyltransferase, putative, expressed -
2 Sobic.007G137101 R2R3 MYB transcription factor(PubMedID : 33633216) K09422: transcription factor MYB, plant
3 Sobic.002G255600 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
4 Sobic.001G158200 PLA IIIA/PLP7, putative, expressed -
5 Sobic.002G343600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 23108465)@polygalacturonase inhibitor 1 precursor, putative, expressed -
6 Sobic.010G255000 uncharacterized protein At4g06744 precursor, putative, expressed -
7 Sobic.010G048600 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
8 Sobic.006G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@- -
9 Sobic.003G204200 AP2/B3 transcription factor(PubMedID : 27016024)@B3 DNA binding domain containing protein, expressed -
10 Sobic.005G070700 - -
11 Sobic.006G031900 expansin precursor, putative, expressed -
12 Sobic.001G459300 - -
13 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
14 Sobic.003G316601 - -
15 Sobic.004G075900 CSLA1 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
16 Sobic.003G244000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
17 Sobic.003G060700 expressed protein -
18 Sobic.003G250100 homeobox domain containing protein, expressed -
19 Sobic.001G157700 PLA IIIA/PLP7, putative, expressed -
20 Sobic.004G070900 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic006G170100 Sobic006G170100 Sobic003G390700 Sobic003G390700 Sobic006G170100--Sobic003G390700 Sobic007G137101 Sobic007G137101 Sobic006G170100--Sobic007G137101 Sobic002G255600 Sobic002G255600 Sobic006G170100--Sobic002G255600 Sobic001G158200 Sobic001G158200 Sobic006G170100--Sobic001G158200 Sobic002G343600 Sobic002G343600 Sobic006G170100--Sobic002G343600 Sobic010G255000 Sobic010G255000 Sobic006G170100--Sobic010G255000 Sobic010G048600 Sobic010G048600 Sobic006G170100--Sobic010G048600 Sobic006G076000 Sobic006G076000 Sobic006G170100--Sobic006G076000 Sobic003G204200 Sobic003G204200 Sobic006G170100--Sobic003G204200 Sobic003G250100 Sobic003G250100 Sobic003G390700--Sobic003G250100 Sobic002G196500 Sobic002G196500 Sobic003G390700--Sobic002G196500 Sobic003G390700--Sobic006G170100 Sobic003G390700--Sobic010G255000 Sobic003G390700--Sobic003G204200 Sobic007G201900 Sobic007G201900 Sobic003G390700--Sobic007G201900 Sobic002G112000 Sobic002G112000 Sobic003G390700--Sobic002G112000 Sobic007G121600 Sobic007G121600 Sobic003G390700--Sobic007G121600 Sobic003G244000 Sobic003G244000 Sobic003G390700--Sobic003G244000 Sobic007G121200 Sobic007G121200 Sobic007G137101--Sobic007G121200 Sobic001G106500 Sobic001G106500 Sobic007G137101--Sobic001G106500 Sobic001G456000 Sobic001G456000 Sobic007G137101--Sobic001G456000 Sobic010G183800 Sobic010G183800 Sobic007G137101--Sobic010G183800 Sobic007G137101--Sobic010G255000 Sobic007G137101--Sobic010G048600 Sobic001G459300 Sobic001G459300 Sobic007G137101--Sobic001G459300 Sobic003G092300 Sobic003G092300 Sobic007G137101--Sobic003G092300 Sobic001G459400 Sobic001G459400 Sobic007G137101--Sobic001G459400 Sobic010G220800 Sobic010G220800 Sobic002G255600--Sobic010G220800 Sobic002G255600--Sobic010G255000 Sobic002G255600--Sobic006G076000 Sobic001G313800 Sobic001G313800 Sobic002G255600--Sobic001G313800 Sobic002G255600--Sobic002G343600 Sobic006G006400 Sobic006G006400 Sobic002G255600--Sobic006G006400 Sobic010G261700 Sobic010G261700 Sobic002G255600--Sobic010G261700 Sobic004G086500 Sobic004G086500 Sobic002G255600--Sobic004G086500 Sobic009G059800 Sobic009G059800 Sobic002G255600--Sobic009G059800 Sobic003G060700 Sobic003G060700 Sobic001G158200--Sobic003G060700 Sobic005G070101 Sobic005G070101 Sobic001G158200--Sobic005G070101 Sobic004G168000 Sobic004G168000 Sobic001G158200--Sobic004G168000 Sobic002G159000 Sobic002G159000 Sobic001G158200--Sobic002G159000 Sobic009G179000 Sobic009G179000 Sobic001G158200--Sobic009G179000 Sobic002G239101 Sobic002G239101 Sobic001G158200--Sobic002G239101 Sobic006G134700 Sobic006G134700 Sobic001G158200--Sobic006G134700 Sobic006G213900 Sobic006G213900 Sobic001G158200--Sobic006G213900 Sobic001G158200--Sobic010G048600 Sobic002G343600--Sobic006G076000 Sobic002G343600--Sobic004G086500 Sobic004G277700 Sobic004G277700 Sobic002G343600--Sobic004G277700 Sobic006G031900 Sobic006G031900 Sobic002G343600--Sobic006G031900 Sobic002G343600--Sobic009G059800 Sobic002G343600--Sobic010G048600 Sobic002G343600--Sobic001G456000 Sobic007G218400 Sobic007G218400 Sobic002G343600--Sobic007G218400 Sobic009G059932 Sobic009G059932 Sobic002G343600--Sobic009G059932 Sobic007G147200 Sobic007G147200 Sobic010G255000--Sobic007G147200 Sobic001G101700 Sobic001G101700 Sobic010G255000--Sobic001G101700 Sobic010G255000--Sobic007G201900 Sobic003G046400 Sobic003G046400 Sobic010G255000--Sobic003G046400 Sobic010G255000--Sobic002G255600 Sobic010G255000--Sobic007G137101 Sobic010G255000--Sobic001G106500 Sobic010G255000--Sobic007G121200 Sobic010G255000--Sobic010G220800 Sobic010G048600--Sobic001G459300 Sobic005G070700 Sobic005G070700 Sobic010G048600--Sobic005G070700 Sobic010G048600--Sobic001G459400 Sobic010G048600--Sobic001G106500 Sobic001G274300 Sobic001G274300 Sobic010G048600--Sobic001G274300 Sobic010G048600--Sobic001G456000 Sobic010G048600--Sobic003G092300 Sobic002G078900 Sobic002G078900 Sobic010G048600--Sobic002G078900 Sobic010G048600--Sobic010G183800 Sobic004G254300 Sobic004G254300 Sobic006G076000--Sobic004G254300 Sobic006G076000--Sobic002G343600 Sobic006G076000--Sobic007G218400 Sobic001G139850 Sobic001G139850 Sobic006G076000--Sobic001G139850 Sobic009G059866 Sobic009G059866 Sobic006G076000--Sobic009G059866 Sobic006G076000--Sobic009G059932 Sobic006G076000--Sobic004G086500 Sobic006G076000--Sobic009G059800 Sobic006G076000--Sobic010G220800 Sobic002G237000 Sobic002G237000 Sobic003G204200--Sobic002G237000 Sobic004G321400 Sobic004G321400 Sobic003G204200--Sobic004G321400 Sobic001G105800 Sobic001G105800 Sobic003G204200--Sobic001G105800 Sobic003G204200--Sobic010G255000 Sobic004G035800 Sobic004G035800 Sobic003G204200--Sobic004G035800 Sobic009G172950 Sobic009G172950 Sobic003G204200--Sobic009G172950 Sobic010G092400 Sobic010G092400 Sobic003G204200--Sobic010G092400 Sobic004G190500 Sobic004G190500 Sobic003G204200--Sobic004G190500 Sobic002G223900 Sobic002G223900 Sobic003G204200--Sobic002G223900
Octagon: transcription factors


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