Gene annotation
Transcriptome id Sobic.004G296600.1
Synonym Sb04g033060
Functional annotation ribosome biogenesis protein NEP1, putative, expressed
UniProt C5XRZ6
Pfam PF03587
Panther DB PTHR12636 PTHR12636:SF5
NCBI CDD KOG3073; Protein required for 18S rRNA maturation and 40S ribosome biogenesis
KEGG Orthology K14568; EMG1, rRNA small subunit pseudouridine methyltransferase Nep1
Gene Ontology GO:0008168; methyltransferase activity


Orthologs (automatic annotation)
TAIR AT3G57000 : nucleolar essential protein-related
RAP-DB (Rice) LOC_Os02g18830.1 : ribosome biogenesis protein NEP1, putative, expressed
MaizeGDB (Corn) Zm00025a020891
Brachypodium KQJ94453
Barley HORVU7Hr1G105060.1 , HORVU6Hr1G053970.1 , HORVU7Hr1G105060.2
Wheat TraesCS6A02G211200 , TraesCS6A02G211200 , TraesCS7A02G455600 , TraesCS1A02G010700 , TraesCS7B02G356300 , TraesCS7B02G356100 , TraesCS6B02G240700 , TraesCS6D02G194300 , TraesCS6D02G194300
Populus -


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cDNA sequences
Sobic.004G296600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
2 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
3 Sobic.007G227100 expressed protein -
4 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
5 Sobic.004G092350 - -
6 Sobic.003G012400 flavin monooxygenase, putative, expressed -
7 Sobic.001G263100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
8 Sobic.001G077300 thioredoxin, putative, expressed -
9 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
10 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.006G235300 expressed protein -
12 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
13 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
14 Sobic.001G359300 cytochrome P450, putative, expressed -
15 Sobic.001G540600 expressed protein -
16 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
17 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
18 Sobic.003G409700 rieske domain containing protein, expressed -
19 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
20 Sobic.004G006800 expressed protein -


Gene co-expression network
sample Sobic004G296600 Sobic004G296600 Sobic003G073800 Sobic003G073800 Sobic004G296600--Sobic003G073800 Sobic001G378100 Sobic001G378100 Sobic004G296600--Sobic001G378100 Sobic007G227100 Sobic007G227100 Sobic004G296600--Sobic007G227100 Sobic004G127800 Sobic004G127800 Sobic004G296600--Sobic004G127800 Sobic004G092350 Sobic004G092350 Sobic004G296600--Sobic004G092350 Sobic003G012400 Sobic003G012400 Sobic004G296600--Sobic003G012400 Sobic001G263100 Sobic001G263100 Sobic004G296600--Sobic001G263100 Sobic001G077300 Sobic001G077300 Sobic004G296600--Sobic001G077300 Sobic006G161500 Sobic006G161500 Sobic004G296600--Sobic006G161500 Sobic003G073800--Sobic001G378100 Sobic003G073800--Sobic001G077300 Sobic001G180200 Sobic001G180200 Sobic003G073800--Sobic001G180200 Sobic009G207900 Sobic009G207900 Sobic003G073800--Sobic009G207900 Sobic001G536700 Sobic001G536700 Sobic003G073800--Sobic001G536700 Sobic009G073900 Sobic009G073900 Sobic003G073800--Sobic009G073900 Sobic006G090100 Sobic006G090100 Sobic003G073800--Sobic006G090100 Sobic007G058100 Sobic007G058100 Sobic003G073800--Sobic007G058100 Sobic002G206300 Sobic002G206300 Sobic003G073800--Sobic002G206300 Sobic001G378100--Sobic003G073800 Sobic001G217900 Sobic001G217900 Sobic001G378100--Sobic001G217900 Sobic001G504400 Sobic001G504400 Sobic001G378100--Sobic001G504400 Sobic001G378100--Sobic001G077300 Sobic001G540600 Sobic001G540600 Sobic001G378100--Sobic001G540600 Sobic001G378100--Sobic001G536700 Sobic006G232600 Sobic006G232600 Sobic001G378100--Sobic006G232600 Sobic009G170200 Sobic009G170200 Sobic001G378100--Sobic009G170200 Sobic001G258200 Sobic001G258200 Sobic001G378100--Sobic001G258200 Sobic004G312600 Sobic004G312600 Sobic007G227100--Sobic004G312600 Sobic007G227100--Sobic004G127800 Sobic007G227100--Sobic001G077300 Sobic001G331600 Sobic001G331600 Sobic007G227100--Sobic001G331600 Sobic008G038500 Sobic008G038500 Sobic007G227100--Sobic008G038500 Sobic002G382700 Sobic002G382700 Sobic007G227100--Sobic002G382700 Sobic006G235400 Sobic006G235400 Sobic007G227100--Sobic006G235400 Sobic003G341300 Sobic003G341300 Sobic007G227100--Sobic003G341300 Sobic001G485100 Sobic001G485100 Sobic007G227100--Sobic001G485100 Sobic004G127800--Sobic007G227100 Sobic004G127800--Sobic001G077300 Sobic006G235300 Sobic006G235300 Sobic004G127800--Sobic006G235300 Sobic004G127800--Sobic004G312600 Sobic004G127800--Sobic006G235400 Sobic004G127800--Sobic006G090100 Sobic004G127800--Sobic001G331600 Sobic006G191500 Sobic006G191500 Sobic004G127800--Sobic006G191500 Sobic004G127800--Sobic009G073900 Sobic002G137850 Sobic002G137850 Sobic004G092350--Sobic002G137850 Sobic006G037900 Sobic006G037900 Sobic004G092350--Sobic006G037900 Sobic004G124601 Sobic004G124601 Sobic004G092350--Sobic004G124601 Sobic004G117000 Sobic004G117000 Sobic004G092350--Sobic004G117000 Sobic002G171101 Sobic002G171101 Sobic004G092350--Sobic002G171101 Sobic004G154532 Sobic004G154532 Sobic004G092350--Sobic004G154532 Sobic010G100300 Sobic010G100300 Sobic004G092350--Sobic010G100300 Sobic004G092350--Sobic004G296600 Sobic002G119100 Sobic002G119100 Sobic004G092350--Sobic002G119100 Sobic004G128900 Sobic004G128900 Sobic003G012400--Sobic004G128900 Sobic004G153900 Sobic004G153900 Sobic003G012400--Sobic004G153900 Sobic002G161400 Sobic002G161400 Sobic003G012400--Sobic002G161400 Sobic003G012400--Sobic006G161500 Sobic003G012400--Sobic001G263100 Sobic004G035100 Sobic004G035100 Sobic003G012400--Sobic004G035100 Sobic003G012400--Sobic006G235400 Sobic009G246400 Sobic009G246400 Sobic003G012400--Sobic009G246400 Sobic003G012400--Sobic001G331600 Sobic001G263100--Sobic007G058100 Sobic010G231300 Sobic010G231300 Sobic001G263100--Sobic010G231300 Sobic008G129900 Sobic008G129900 Sobic001G263100--Sobic008G129900 Sobic002G162400 Sobic002G162400 Sobic001G263100--Sobic002G162400 Sobic001G263100--Sobic001G180200 Sobic001G263100--Sobic001G217900 Sobic001G263100--Sobic003G341300 Sobic001G263100--Sobic002G206300 Sobic001G263100--Sobic006G235400 Sobic001G077300--Sobic009G073900 Sobic001G077300--Sobic006G090100 Sobic001G077300--Sobic006G235400 Sobic001G077300--Sobic004G127800 Sobic001G359300 Sobic001G359300 Sobic001G077300--Sobic001G359300 Sobic009G093100 Sobic009G093100 Sobic001G077300--Sobic009G093100 Sobic001G077300--Sobic003G341300 Sobic006G212800 Sobic006G212800 Sobic001G077300--Sobic006G212800 Sobic003G003450 Sobic003G003450 Sobic001G077300--Sobic003G003450 Sobic006G161500--Sobic004G128900 Sobic006G161500--Sobic010G231300 Sobic003G409700 Sobic003G409700 Sobic006G161500--Sobic003G409700 Sobic006G161500--Sobic006G235400 Sobic004G322600 Sobic004G322600 Sobic006G161500--Sobic004G322600 Sobic006G161500--Sobic004G035100 Sobic001G073300 Sobic001G073300 Sobic006G161500--Sobic001G073300 Sobic006G161500--Sobic002G119100 Sobic009G194500 Sobic009G194500 Sobic006G161500--Sobic009G194500
Octagon: transcription factors


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