Gene annotation
Transcriptome id Sobic.004G326800.2,Sobic.004G326800.1
Synonym Sb04g035620
Functional annotation expressed protein
UniProt C5XUD1
Pfam -
Panther DB PTHR33124 PTHR33124:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G30410 : sequence-specific DNA binding transcription factors
RAP-DB (Rice) LOC_Os02g54870.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQK01094
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G229700 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
2 Sobic.003G319900 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.1 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
3 Sobic.001G183500 cysteine proteinase inhibitor precursor, putative, expressed -
4 Sobic.005G062600 MLO domain containing protein, putative, expressed K08472: mlo protein
5 Sobic.005G168400 expressed protein -
6 Sobic.001G079900 expressed protein -
7 Sobic.001G384700 RNA-binding zinc finger protein, putative, expressed -
8 Sobic.003G035400 "GW5/qSW5(Ortholog in rice:Liu et al., 2017)"(PubMedID : 31659867)@IQ calmodulin-binding motif family protein, expressed -
9 Sobic.006G232900 expressed protein -
10 Sobic.010G220800 zinc-binding protein, putative, expressed -
11 Sobic.009G141700 expressed protein -
12 Sobic.003G316601 - -
13 Sobic.004G237000 down-regulated TF in developmental senescence(PubMedID : 27586543)@"PGL2(Ortholog in rice:Heang and Sassa, 2012b(PubMedID : 31659886)@helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.007G023100 CCT motif family protein, expressed -
15 Sobic.007G132900 linker histone H1 and H5 family protein, expressed -
16 Sobic.010G169200 homeobox domain containing protein, expressed -
17 Sobic.007G121200 YDG/SRA domain containing protein, expressed -
18 Sobic.001G138800 GCRP4 - Glycine and cysteine rich family protein precursor, expressed -
19 Sobic.001G463301 - -
20 Sobic.010G022000 hydrolase, alpha/beta fold family domain containing protein, expressed -


Gene co-expression network
sample Sobic004G326800 Sobic004G326800 Sobic004G229700 Sobic004G229700 Sobic004G326800--Sobic004G229700 Sobic003G319900 Sobic003G319900 Sobic004G326800--Sobic003G319900 Sobic001G183500 Sobic001G183500 Sobic004G326800--Sobic001G183500 Sobic005G062600 Sobic005G062600 Sobic004G326800--Sobic005G062600 Sobic005G168400 Sobic005G168400 Sobic004G326800--Sobic005G168400 Sobic001G079900 Sobic001G079900 Sobic004G326800--Sobic001G079900 Sobic001G384700 Sobic001G384700 Sobic004G326800--Sobic001G384700 Sobic003G035400 Sobic003G035400 Sobic004G326800--Sobic003G035400 Sobic006G232900 Sobic006G232900 Sobic004G326800--Sobic006G232900 Sobic004G229700--Sobic004G326800 Sobic003G365800 Sobic003G365800 Sobic004G229700--Sobic003G365800 Sobic004G229700--Sobic005G062600 Sobic001G271600 Sobic001G271600 Sobic004G229700--Sobic001G271600 Sobic003G383700 Sobic003G383700 Sobic004G229700--Sobic003G383700 Sobic003G295100 Sobic003G295100 Sobic004G229700--Sobic003G295100 Sobic005G104100 Sobic005G104100 Sobic004G229700--Sobic005G104100 Sobic007G023100 Sobic007G023100 Sobic004G229700--Sobic007G023100 Sobic001G463301 Sobic001G463301 Sobic004G229700--Sobic001G463301 Sobic003G319900--Sobic005G168400 Sobic010G220800 Sobic010G220800 Sobic003G319900--Sobic010G220800 Sobic002G205000 Sobic002G205000 Sobic003G319900--Sobic002G205000 Sobic010G169200 Sobic010G169200 Sobic003G319900--Sobic010G169200 Sobic004G237000 Sobic004G237000 Sobic003G319900--Sobic004G237000 Sobic002G268300 Sobic002G268300 Sobic003G319900--Sobic002G268300 Sobic003G091700 Sobic003G091700 Sobic003G319900--Sobic003G091700 Sobic001G160100 Sobic001G160100 Sobic003G319900--Sobic001G160100 Sobic002G426000 Sobic002G426000 Sobic003G319900--Sobic002G426000 Sobic009G000600 Sobic009G000600 Sobic001G183500--Sobic009G000600 Sobic002G050700 Sobic002G050700 Sobic001G183500--Sobic002G050700 Sobic001G183500--Sobic001G079900 Sobic006G171050 Sobic006G171050 Sobic001G183500--Sobic006G171050 Sobic001G183500--Sobic004G326800 Sobic009G077300 Sobic009G077300 Sobic001G183500--Sobic009G077300 Sobic007G199600 Sobic007G199600 Sobic001G183500--Sobic007G199600 Sobic001G038450 Sobic001G038450 Sobic001G183500--Sobic001G038450 Sobic010G026100 Sobic010G026100 Sobic001G183500--Sobic010G026100 Sobic004G267600 Sobic004G267600 Sobic005G062600--Sobic004G267600 Sobic010G092400 Sobic010G092400 Sobic005G062600--Sobic010G092400 Sobic007G121600 Sobic007G121600 Sobic005G062600--Sobic007G121600 Sobic005G062600--Sobic001G079900 Sobic010G129700 Sobic010G129700 Sobic005G062600--Sobic010G129700 Sobic007G161600 Sobic007G161600 Sobic005G062600--Sobic007G161600 Sobic001G493900 Sobic001G493900 Sobic005G062600--Sobic001G493900 Sobic008G070700 Sobic008G070700 Sobic005G062600--Sobic008G070700 Sobic003G019900 Sobic003G019900 Sobic005G062600--Sobic003G019900 Sobic010G168700 Sobic010G168700 Sobic005G168400--Sobic010G168700 Sobic001G143400 Sobic001G143400 Sobic005G168400--Sobic001G143400 Sobic004G003700 Sobic004G003700 Sobic005G168400--Sobic004G003700 Sobic005G168400--Sobic003G319900 Sobic001G393200 Sobic001G393200 Sobic005G168400--Sobic001G393200 Sobic009G047500 Sobic009G047500 Sobic005G168400--Sobic009G047500 Sobic005G199700 Sobic005G199700 Sobic005G168400--Sobic005G199700 Sobic001G379900 Sobic001G379900 Sobic005G168400--Sobic001G379900 Sobic007G152300 Sobic007G152300 Sobic005G168400--Sobic007G152300 Sobic005G032600 Sobic005G032600 Sobic001G079900--Sobic005G032600 Sobic001G079900--Sobic001G384700 Sobic001G079900--Sobic005G062600 Sobic001G079900--Sobic002G050700 Sobic003G351900 Sobic003G351900 Sobic001G079900--Sobic003G351900 Sobic001G079900--Sobic001G493900 Sobic008G151600 Sobic008G151600 Sobic001G079900--Sobic008G151600 Sobic002G027600 Sobic002G027600 Sobic001G079900--Sobic002G027600 Sobic009G141700 Sobic009G141700 Sobic001G079900--Sobic009G141700 Sobic002G216600 Sobic002G216600 Sobic001G384700--Sobic002G216600 Sobic001G384700--Sobic001G079900 Sobic001G384700--Sobic009G141700 Sobic006G046600 Sobic006G046600 Sobic001G384700--Sobic006G046600 Sobic005G204100 Sobic005G204100 Sobic001G384700--Sobic005G204100 Sobic004G052800 Sobic004G052800 Sobic001G384700--Sobic004G052800 Sobic001G384700--Sobic005G168400 Sobic001G384700--Sobic001G379900 Sobic001G434100 Sobic001G434100 Sobic001G384700--Sobic001G434100 Sobic003G035400--Sobic004G326800 Sobic003G035400--Sobic005G168400 Sobic003G035400--Sobic003G319900 Sobic003G035400--Sobic001G384700 Sobic003G035400--Sobic007G152300 Sobic007G132900 Sobic007G132900 Sobic003G035400--Sobic007G132900 Sobic002G007200 Sobic002G007200 Sobic003G035400--Sobic002G007200 Sobic004G012700 Sobic004G012700 Sobic003G035400--Sobic004G012700 Sobic003G035400--Sobic006G232900 Sobic006G221800 Sobic006G221800 Sobic006G232900--Sobic006G221800 Sobic006G232900--Sobic005G168400 Sobic006G232900--Sobic001G143400 Sobic006G232900--Sobic004G003700 Sobic001G101700 Sobic001G101700 Sobic006G232900--Sobic001G101700 Sobic010G255000 Sobic010G255000 Sobic006G232900--Sobic010G255000 Sobic004G198100 Sobic004G198100 Sobic006G232900--Sobic004G198100 Sobic006G232900--Sobic010G220800 Sobic007G147200 Sobic007G147200 Sobic006G232900--Sobic007G147200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.