Gene annotation
Transcriptome id Sobic.005G019400.1
Synonym
Functional annotation rp3 protein, putative, expressed
UniProt C5Y3N1
Pfam PF00931
Panther DB PTHR23155 PTHR23155:SF455
NCBI CDD KOG4658; Apoptotic ATPase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G14460 : LRR and NB-ARC domains-containing disease resistance protein
RAP-DB (Rice) LOC_Os05g23990.1 : rp3 protein, putative, expressed
MaizeGDB (Corn) Zm00025a033357 , Zm00025a033361
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G189700 DNAJ heat shock N-terminal domain-containing protein, putative, expressed -
2 Sobic.003G049300 expressed protein -
3 Sobic.004G053200 Cupin domain containing protein, expressed -
4 Sobic.003G035700 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA2 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
5 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
6 Sobic.003G429300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NADPH quinone oxidoreductase, putative, expressed -
7 Sobic.001G403600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
8 Sobic.010G225100 DUF640 domain containing protein, putative, expressed -
9 Sobic.001G290400 no apical meristem protein, putative, expressed -
10 Sobic.007G057500 - -
11 Sobic.003G296700 protein kinase domain containing protein, expressed -
12 Sobic.001G054400 expressed protein -
13 Sobic.006G228300 ethylene-responsive protein related, putative, expressed -
14 Sobic.006G179500 protein kinase APK1B, chloroplast precursor, putative, expressed -
15 Sobic.003G012800 AP2 domain containing protein, expressed -
16 Sobic.003G423500 SbGlu1 promoter sequences(-2000 bp to -1 bp) bound and upregulated by SbSTOP1(PubMedID : 30387379)@"beta-1,3-glucanase, localized throuout cytoplasm and nuclei with no specific subcellular localization"(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
17 Sobic.001G079500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ZOS3-18 - C2H2 zinc finger protein, expressed -
18 Sobic.009G028300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor TF2, putative, expressed -
19 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
20 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7


Gene co-expression network
sample Sobic005G019400 Sobic005G019400 Sobic001G189700 Sobic001G189700 Sobic005G019400--Sobic001G189700 Sobic003G049300 Sobic003G049300 Sobic005G019400--Sobic003G049300 Sobic004G053200 Sobic004G053200 Sobic005G019400--Sobic004G053200 Sobic003G035700 Sobic003G035700 Sobic005G019400--Sobic003G035700 Sobic005G231700 Sobic005G231700 Sobic005G019400--Sobic005G231700 Sobic003G429300 Sobic003G429300 Sobic005G019400--Sobic003G429300 Sobic001G403600 Sobic001G403600 Sobic005G019400--Sobic001G403600 Sobic010G225100 Sobic010G225100 Sobic005G019400--Sobic010G225100 Sobic001G290400 Sobic001G290400 Sobic005G019400--Sobic001G290400 Sobic001G189700--Sobic004G053200 Sobic003G338900 Sobic003G338900 Sobic001G189700--Sobic003G338900 Sobic002G080000 Sobic002G080000 Sobic001G189700--Sobic002G080000 Sobic004G280800 Sobic004G280800 Sobic001G189700--Sobic004G280800 Sobic001G189700--Sobic001G290400 Sobic001G189700--Sobic001G403600 Sobic003G012800 Sobic003G012800 Sobic001G189700--Sobic003G012800 Sobic009G044400 Sobic009G044400 Sobic001G189700--Sobic009G044400 Sobic005G139700 Sobic005G139700 Sobic001G189700--Sobic005G139700 Sobic002G242500 Sobic002G242500 Sobic003G049300--Sobic002G242500 Sobic004G145200 Sobic004G145200 Sobic003G049300--Sobic004G145200 Sobic003G049300--Sobic010G225100 Sobic006G076201 Sobic006G076201 Sobic003G049300--Sobic006G076201 Sobic002G210901 Sobic002G210901 Sobic003G049300--Sobic002G210901 Sobic009G149400 Sobic009G149400 Sobic003G049300--Sobic009G149400 Sobic010G228000 Sobic010G228000 Sobic003G049300--Sobic010G228000 Sobic009G155200 Sobic009G155200 Sobic003G049300--Sobic009G155200 Sobic010G236500 Sobic010G236500 Sobic003G049300--Sobic010G236500 Sobic004G053200--Sobic001G189700 Sobic004G053200--Sobic001G290400 Sobic004G053200--Sobic004G280800 Sobic004G053200--Sobic003G338900 Sobic001G473900 Sobic001G473900 Sobic004G053200--Sobic001G473900 Sobic004G025000 Sobic004G025000 Sobic004G053200--Sobic004G025000 Sobic001G476400 Sobic001G476400 Sobic004G053200--Sobic001G476400 Sobic001G081600 Sobic001G081600 Sobic004G053200--Sobic001G081600 Sobic006G095600 Sobic006G095600 Sobic004G053200--Sobic006G095600 Sobic003G423500 Sobic003G423500 Sobic003G035700--Sobic003G423500 Sobic004G147900 Sobic004G147900 Sobic003G035700--Sobic004G147900 Sobic010G200700 Sobic010G200700 Sobic003G035700--Sobic010G200700 Sobic004G195300 Sobic004G195300 Sobic003G035700--Sobic004G195300 Sobic004G297200 Sobic004G297200 Sobic003G035700--Sobic004G297200 Sobic010G078600 Sobic010G078600 Sobic003G035700--Sobic010G078600 Sobic003G035700--Sobic001G290400 Sobic003G035700--Sobic003G012800 Sobic001G482700 Sobic001G482700 Sobic003G035700--Sobic001G482700 Sobic006G087900 Sobic006G087900 Sobic005G231700--Sobic006G087900 Sobic001G063600 Sobic001G063600 Sobic005G231700--Sobic001G063600 Sobic002G325900 Sobic002G325900 Sobic005G231700--Sobic002G325900 Sobic003G296700 Sobic003G296700 Sobic005G231700--Sobic003G296700 Sobic010G080400 Sobic010G080400 Sobic005G231700--Sobic010G080400 Sobic009G208800 Sobic009G208800 Sobic005G231700--Sobic009G208800 Sobic008G159100 Sobic008G159100 Sobic005G231700--Sobic008G159100 Sobic002G337800 Sobic002G337800 Sobic005G231700--Sobic002G337800 Sobic005G231700--Sobic004G025000 Sobic007G171000 Sobic007G171000 Sobic003G429300--Sobic007G171000 Sobic006G179500 Sobic006G179500 Sobic003G429300--Sobic006G179500 Sobic008G111100 Sobic008G111100 Sobic003G429300--Sobic008G111100 Sobic002G224100 Sobic002G224100 Sobic003G429300--Sobic002G224100 Sobic003G019200 Sobic003G019200 Sobic003G429300--Sobic003G019200 Sobic002G195900 Sobic002G195900 Sobic003G429300--Sobic002G195900 Sobic006G228300 Sobic006G228300 Sobic003G429300--Sobic006G228300 Sobic003G429300--Sobic010G200700 Sobic002G359300 Sobic002G359300 Sobic003G429300--Sobic002G359300 Sobic002G118600 Sobic002G118600 Sobic001G403600--Sobic002G118600 Sobic001G403600--Sobic001G290400 Sobic001G403600--Sobic001G081600 Sobic001G403600--Sobic010G228000 Sobic001G403600--Sobic004G280800 Sobic001G403600--Sobic001G189700 Sobic007G011000 Sobic007G011000 Sobic001G403600--Sobic007G011000 Sobic001G403600--Sobic005G139700 Sobic001G403600--Sobic001G482700 Sobic004G333900 Sobic004G333900 Sobic010G225100--Sobic004G333900 Sobic006G131400 Sobic006G131400 Sobic010G225100--Sobic006G131400 Sobic010G225100--Sobic006G179500 Sobic010G225100--Sobic002G359300 Sobic003G300800 Sobic003G300800 Sobic010G225100--Sobic003G300800 Sobic002G272900 Sobic002G272900 Sobic010G225100--Sobic002G272900 Sobic005G103300 Sobic005G103300 Sobic010G225100--Sobic005G103300 Sobic001G516600 Sobic001G516600 Sobic010G225100--Sobic001G516600 Sobic002G294700 Sobic002G294700 Sobic010G225100--Sobic002G294700 Sobic001G290400--Sobic002G118600 Sobic001G290400--Sobic002G294700 Sobic001G051800 Sobic001G051800 Sobic001G290400--Sobic001G051800 Sobic001G290400--Sobic004G053200 Sobic001G290400--Sobic003G338900 Sobic001G290400--Sobic001G473900 Sobic001G290400--Sobic010G228000 Sobic001G290400--Sobic005G139700 Sobic001G538866 Sobic001G538866 Sobic001G290400--Sobic001G538866
Octagon: transcription factors


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