Gene annotation
Transcriptome id Sobic.005G045100.2,Sobic.005G045100.1
Synonym Sb05g003740, LHW
Functional annotation helix-loop-helix DNA-binding protein, putative, expressed
UniProt A0A1Z5RGL1 , C5Y549
Pfam PF14215
Panther DB PTHR13902 PTHR13902:SF66
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27230 : transcription factor-related
RAP-DB (Rice) LOC_Os11g06010.1 : helix-loop-helix DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a012935 , Zm00025a034142 , Zm00025a025792 , Zm00025a053958
Brachypodium KQJ92159
Barley HORVU4Hr1G020740.17 , HORVU4Hr1G020740.16 , HORVU4Hr1G020740.15 , HORVU4Hr1G020740.14 , HORVU4Hr1G020740.13 , HORVU4Hr1G020740.12 , HORVU4Hr1G020740.11 , HORVU4Hr1G020740.10 , HORVU4Hr1G020740.7 , HORVU4Hr1G020740.6 , HORVU5Hr1G040090.11 , HORVU4Hr1G020740.3 , HORVU5Hr1G040090.2 , HORVU5Hr1G040090.3 , HORVU5Hr1G040090.8 , HORVU5Hr1G040090.9 , HORVU4Hr1G020740.5 , HORVU4Hr1G020740.9 , HORVU4Hr1G020740.8 , HORVU5Hr1G040090.12 , HORVU5Hr1G040090.13 , HORVU5Hr1G040090.10 , HORVU4Hr1G020740.4 , HORVU5Hr1G040090.16 , HORVU4Hr1G020740.2 , HORVU5Hr1G040090.14 , HORVU5Hr1G040090.15 , HORVU4Hr1G020740.1
Wheat TraesCS4A02G200700 , TraesCS5A02G125200 , TraesCS5A02G125200 , TraesCS5A02G125200 , TraesCS5D02G132900 , TraesCS5D02G132900 , TraesCS4B02G114800 , TraesCS4B02G114800 , TraesCS4B02G114800 , TraesCS4B02G114800 , TraesCS4B02G114800 , TraesCS4B02G114800 , TraesCS4B02G114800 , TraesCS4B02G114800 , TraesCS5D02G132900 , TraesCS5D02G132900 , TraesCS5D02G132900 , TraesCS5D02G132900 , TraesCS5B02G124700 , TraesCS4D02G112100 , TraesCS5B02G124700 , TraesCS4D02G112100 , TraesCS5B02G124700 , TraesCS4D02G112100 , TraesCS4A02G200700 , TraesCS4A02G200700 , TraesCS4A02G200700 , TraesCS4A02G200700 , TraesCS5B02G124700 , TraesCS4D02G112100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G110523 - -
2 Sobic.002G090400 polygalacturonase, putative, expressed -
3 Sobic.001G094000 expressed protein -
4 Sobic.002G010800 NBS-LRR disease resistance protein, putative, expressed K13457: RPM1, disease resistance protein RPM1
5 Sobic.003G023400 SCAR-like protein 2, putative, expressed -
6 Sobic.003G315332 - K15421: secretion-regulating guanine nucleotide exchange factor
7 Sobic.002G049000 frigida, putative, expressed -
8 Sobic.005G001100 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed -
9 Sobic.008G063000 transcriptional corepressor SEUSS, putative, expressed -
10 Sobic.005G084100 Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(PubMedID : 31721651)@inactive receptor kinase At1g27190 precursor, putative, expressed -
11 Sobic.006G028200 glycine-rich protein, putative, expressed -
12 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
13 Sobic.004G030700 expressed protein -
14 Sobic.006G145000 disease resistance RPP13-like protein 1, putative, expressed -
15 Sobic.008G068800 cytokinin inducible protein, putative, expressed -
16 Sobic.006G129700 amine oxidase, flavin-containing, domain containing protein, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
17 Sobic.004G138000 expressed protein -
18 Sobic.007G116400 - -
19 Sobic.010G050700 protein kinase, putative, expressed -
20 Sobic.002G409600 protein kinase APK1B, chloroplast precursor, putative, expressed -


Gene co-expression network
sample Sobic005G045100 Sobic005G045100 Sobic005G110523 Sobic005G110523 Sobic005G045100--Sobic005G110523 Sobic002G090400 Sobic002G090400 Sobic005G045100--Sobic002G090400 Sobic001G094000 Sobic001G094000 Sobic005G045100--Sobic001G094000 Sobic002G010800 Sobic002G010800 Sobic005G045100--Sobic002G010800 Sobic003G023400 Sobic003G023400 Sobic005G045100--Sobic003G023400 Sobic003G315332 Sobic003G315332 Sobic005G045100--Sobic003G315332 Sobic002G049000 Sobic002G049000 Sobic005G045100--Sobic002G049000 Sobic005G001100 Sobic005G001100 Sobic005G045100--Sobic005G001100 Sobic008G063000 Sobic008G063000 Sobic005G045100--Sobic008G063000 Sobic009G004700 Sobic009G004700 Sobic005G110523--Sobic009G004700 Sobic006G009400 Sobic006G009400 Sobic005G110523--Sobic006G009400 Sobic005G005000 Sobic005G005000 Sobic005G110523--Sobic005G005000 Sobic001G477800 Sobic001G477800 Sobic005G110523--Sobic001G477800 Sobic001G464200 Sobic001G464200 Sobic005G110523--Sobic001G464200 Sobic007G059300 Sobic007G059300 Sobic005G110523--Sobic007G059300 Sobic004G169501 Sobic004G169501 Sobic005G110523--Sobic004G169501 Sobic003G089650 Sobic003G089650 Sobic005G110523--Sobic003G089650 Sobic009G113600 Sobic009G113600 Sobic005G110523--Sobic009G113600 Sobic007G099500 Sobic007G099500 Sobic002G090400--Sobic007G099500 Sobic002G090400--Sobic002G049000 Sobic008G068800 Sobic008G068800 Sobic002G090400--Sobic008G068800 Sobic002G090400--Sobic004G169501 Sobic004G143700 Sobic004G143700 Sobic002G090400--Sobic004G143700 Sobic009G059600 Sobic009G059600 Sobic002G090400--Sobic009G059600 Sobic003G424100 Sobic003G424100 Sobic002G090400--Sobic003G424100 Sobic007G073400 Sobic007G073400 Sobic002G090400--Sobic007G073400 Sobic006G145000 Sobic006G145000 Sobic002G090400--Sobic006G145000 Sobic007G011400 Sobic007G011400 Sobic001G094000--Sobic007G011400 Sobic009G040700 Sobic009G040700 Sobic001G094000--Sobic009G040700 Sobic001G094000--Sobic001G477800 Sobic002G157000 Sobic002G157000 Sobic001G094000--Sobic002G157000 Sobic003G268300 Sobic003G268300 Sobic001G094000--Sobic003G268300 Sobic002G157300 Sobic002G157300 Sobic001G094000--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic001G094000--Sobic003G187400 Sobic004G031700 Sobic004G031700 Sobic001G094000--Sobic004G031700 Sobic006G080300 Sobic006G080300 Sobic001G094000--Sobic006G080300 Sobic005G084100 Sobic005G084100 Sobic002G010800--Sobic005G084100 Sobic002G423200 Sobic002G423200 Sobic002G010800--Sobic002G423200 Sobic002G010800--Sobic002G049000 Sobic001G303675 Sobic001G303675 Sobic002G010800--Sobic001G303675 Sobic002G010800--Sobic001G094000 Sobic006G052300 Sobic006G052300 Sobic002G010800--Sobic006G052300 Sobic007G043900 Sobic007G043900 Sobic002G010800--Sobic007G043900 Sobic002G076000 Sobic002G076000 Sobic002G010800--Sobic002G076000 Sobic006G056000 Sobic006G056000 Sobic002G010800--Sobic006G056000 Sobic004G193800 Sobic004G193800 Sobic003G023400--Sobic004G193800 Sobic003G023400--Sobic002G049000 Sobic006G210200 Sobic006G210200 Sobic003G023400--Sobic006G210200 Sobic003G185250 Sobic003G185250 Sobic003G023400--Sobic003G185250 Sobic003G023400--Sobic002G090400 Sobic003G023400--Sobic008G068800 Sobic001G367100 Sobic001G367100 Sobic003G023400--Sobic001G367100 Sobic003G023400--Sobic001G094000 Sobic003G163100 Sobic003G163100 Sobic003G023400--Sobic003G163100 Sobic003G315332--Sobic004G169501 Sobic007G142050 Sobic007G142050 Sobic003G315332--Sobic007G142050 Sobic002G076400 Sobic002G076400 Sobic003G315332--Sobic002G076400 Sobic003G315332--Sobic008G068800 Sobic006G129700 Sobic006G129700 Sobic003G315332--Sobic006G129700 Sobic001G543900 Sobic001G543900 Sobic003G315332--Sobic001G543900 Sobic010G263800 Sobic010G263800 Sobic003G315332--Sobic010G263800 Sobic003G204000 Sobic003G204000 Sobic003G315332--Sobic003G204000 Sobic007G089600 Sobic007G089600 Sobic003G315332--Sobic007G089600 Sobic003G346000 Sobic003G346000 Sobic002G049000--Sobic003G346000 Sobic002G297800 Sobic002G297800 Sobic002G049000--Sobic002G297800 Sobic002G049000--Sobic002G090400 Sobic002G049000--Sobic008G068800 Sobic002G049000--Sobic007G011400 Sobic002G061400 Sobic002G061400 Sobic002G049000--Sobic002G061400 Sobic002G049000--Sobic001G094000 Sobic008G034600 Sobic008G034600 Sobic002G049000--Sobic008G034600 Sobic001G394400 Sobic001G394400 Sobic002G049000--Sobic001G394400 Sobic005G001100--Sobic003G023400 Sobic010G050700 Sobic010G050700 Sobic005G001100--Sobic010G050700 Sobic009G030300 Sobic009G030300 Sobic005G001100--Sobic009G030300 Sobic003G380400 Sobic003G380400 Sobic005G001100--Sobic003G380400 Sobic003G277900 Sobic003G277900 Sobic005G001100--Sobic003G277900 Sobic002G294900 Sobic002G294900 Sobic005G001100--Sobic002G294900 Sobic002G233900 Sobic002G233900 Sobic005G001100--Sobic002G233900 Sobic002G157200 Sobic002G157200 Sobic005G001100--Sobic002G157200 Sobic005G001100--Sobic005G045100 Sobic008G063000--Sobic001G094000 Sobic008G063000--Sobic003G268300 Sobic006G246900 Sobic006G246900 Sobic008G063000--Sobic006G246900 Sobic008G063000--Sobic002G157000 Sobic003G200200 Sobic003G200200 Sobic008G063000--Sobic003G200200 Sobic008G173900 Sobic008G173900 Sobic008G063000--Sobic008G173900 Sobic002G006900 Sobic002G006900 Sobic008G063000--Sobic002G006900 Sobic002G144933 Sobic002G144933 Sobic008G063000--Sobic002G144933 Sobic004G145500 Sobic004G145500 Sobic008G063000--Sobic004G145500
Octagon: transcription factors


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