Gene annotation
Transcriptome id Sobic.005G081000.3,Sobic.005G081000.4,Sobic.005G081000.5
Synonym Sb05g006590
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1Z5RHA3
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF604
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G11460 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os11g14980.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a029579
Brachypodium PNT63770
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G317600 endoribonuclease, putative, expressed -
2 Sobic.007G043600 LSM domain containing protein, expressed K12621: U6 snRNA-associated Sm-like protein LSm2
3 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
4 Sobic.007G031100 RNA polymerase II complex component SRB7, putative, expressed K15152: MED21, mediator of RNA polymerase II transcription subunit 21
5 Sobic.001G178800 - -
6 Sobic.004G015300 expressed protein K16587: HAUS augmin-like complex subunit 4
7 Sobic.009G089366 - -
8 Sobic.001G176900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
9 Sobic.003G115400 RPA3 - Putative single-stranded DNA binding complex subunit 3, expressed K10740: replication factor A3
10 Sobic.006G127500 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
11 Sobic.007G165300 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
12 Sobic.008G090100 - -
13 Sobic.004G184000 SFT2, putative, expressed -
14 Sobic.004G129500 expressed protein -
15 Sobic.001G465500 radical SAM enzyme, putative, expressed -
16 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
17 Sobic.006G122200 glycosyl hydrolase family 5 protein, putative, expressed -
18 Sobic.009G188300 universal stress protein domain containing protein, putative, expressed -
19 Sobic.001G541000 MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
20 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta


Gene co-expression network
sample Sobic005G081000 Sobic005G081000 Sobic002G317600 Sobic002G317600 Sobic005G081000--Sobic002G317600 Sobic007G043600 Sobic007G043600 Sobic005G081000--Sobic007G043600 Sobic001G436300 Sobic001G436300 Sobic005G081000--Sobic001G436300 Sobic007G031100 Sobic007G031100 Sobic005G081000--Sobic007G031100 Sobic001G178800 Sobic001G178800 Sobic005G081000--Sobic001G178800 Sobic004G015300 Sobic004G015300 Sobic005G081000--Sobic004G015300 Sobic009G089366 Sobic009G089366 Sobic005G081000--Sobic009G089366 Sobic001G176900 Sobic001G176900 Sobic005G081000--Sobic001G176900 Sobic003G115400 Sobic003G115400 Sobic005G081000--Sobic003G115400 Sobic002G317600--Sobic001G436300 Sobic008G075200 Sobic008G075200 Sobic002G317600--Sobic008G075200 Sobic008G059900 Sobic008G059900 Sobic002G317600--Sobic008G059900 Sobic007G079600 Sobic007G079600 Sobic002G317600--Sobic007G079600 Sobic007G172600 Sobic007G172600 Sobic002G317600--Sobic007G172600 Sobic003G248300 Sobic003G248300 Sobic002G317600--Sobic003G248300 Sobic001G235700 Sobic001G235700 Sobic002G317600--Sobic001G235700 Sobic008G181400 Sobic008G181400 Sobic002G317600--Sobic008G181400 Sobic002G317600--Sobic001G176900 Sobic003G003000 Sobic003G003000 Sobic007G043600--Sobic003G003000 Sobic006G281200 Sobic006G281200 Sobic007G043600--Sobic006G281200 Sobic010G018000 Sobic010G018000 Sobic007G043600--Sobic010G018000 Sobic001G473400 Sobic001G473400 Sobic007G043600--Sobic001G473400 Sobic006G079900 Sobic006G079900 Sobic007G043600--Sobic006G079900 Sobic009G188300 Sobic009G188300 Sobic007G043600--Sobic009G188300 Sobic009G124400 Sobic009G124400 Sobic007G043600--Sobic009G124400 Sobic004G137900 Sobic004G137900 Sobic007G043600--Sobic004G137900 Sobic006G276200 Sobic006G276200 Sobic007G043600--Sobic006G276200 Sobic006G127500 Sobic006G127500 Sobic001G436300--Sobic006G127500 Sobic001G436300--Sobic001G235700 Sobic001G115500 Sobic001G115500 Sobic001G436300--Sobic001G115500 Sobic003G274400 Sobic003G274400 Sobic001G436300--Sobic003G274400 Sobic001G008500 Sobic001G008500 Sobic001G436300--Sobic001G008500 Sobic006G245700 Sobic006G245700 Sobic001G436300--Sobic006G245700 Sobic004G343600 Sobic004G343600 Sobic001G436300--Sobic004G343600 Sobic001G436300--Sobic002G317600 Sobic001G097400 Sobic001G097400 Sobic001G436300--Sobic001G097400 Sobic007G010200 Sobic007G010200 Sobic007G031100--Sobic007G010200 Sobic001G432100 Sobic001G432100 Sobic007G031100--Sobic001G432100 Sobic002G280900 Sobic002G280900 Sobic007G031100--Sobic002G280900 Sobic003G410200 Sobic003G410200 Sobic007G031100--Sobic003G410200 Sobic003G085500 Sobic003G085500 Sobic007G031100--Sobic003G085500 Sobic001G188700 Sobic001G188700 Sobic007G031100--Sobic001G188700 Sobic002G422400 Sobic002G422400 Sobic007G031100--Sobic002G422400 Sobic007G031100--Sobic006G245700 Sobic009G232500 Sobic009G232500 Sobic007G031100--Sobic009G232500 Sobic001G267000 Sobic001G267000 Sobic001G178800--Sobic001G267000 Sobic009G097900 Sobic009G097900 Sobic001G178800--Sobic009G097900 Sobic001G538100 Sobic001G538100 Sobic001G178800--Sobic001G538100 Sobic003G134700 Sobic003G134700 Sobic001G178800--Sobic003G134700 Sobic001G192250 Sobic001G192250 Sobic001G178800--Sobic001G192250 Sobic009G074250 Sobic009G074250 Sobic001G178800--Sobic009G074250 Sobic005G115400 Sobic005G115400 Sobic001G178800--Sobic005G115400 Sobic001G178800--Sobic005G081000 Sobic001G178800--Sobic007G043600 Sobic001G296800 Sobic001G296800 Sobic004G015300--Sobic001G296800 Sobic006G122200 Sobic006G122200 Sobic004G015300--Sobic006G122200 Sobic009G212100 Sobic009G212100 Sobic004G015300--Sobic009G212100 Sobic004G315700 Sobic004G315700 Sobic004G015300--Sobic004G315700 Sobic005G047000 Sobic005G047000 Sobic004G015300--Sobic005G047000 Sobic001G487200 Sobic001G487200 Sobic004G015300--Sobic001G487200 Sobic004G015300--Sobic006G245700 Sobic007G084200 Sobic007G084200 Sobic004G015300--Sobic007G084200 Sobic004G015300--Sobic001G115500 Sobic004G184000 Sobic004G184000 Sobic009G089366--Sobic004G184000 Sobic001G451901 Sobic001G451901 Sobic009G089366--Sobic001G451901 Sobic003G028100 Sobic003G028100 Sobic009G089366--Sobic003G028100 Sobic003G388700 Sobic003G388700 Sobic009G089366--Sobic003G388700 Sobic006G153200 Sobic006G153200 Sobic009G089366--Sobic006G153200 Sobic001G110300 Sobic001G110300 Sobic009G089366--Sobic001G110300 Sobic006G223500 Sobic006G223500 Sobic009G089366--Sobic006G223500 Sobic010G194200 Sobic010G194200 Sobic009G089366--Sobic010G194200 Sobic009G089366--Sobic001G176900 Sobic010G134100 Sobic010G134100 Sobic001G176900--Sobic010G134100 Sobic004G356300 Sobic004G356300 Sobic001G176900--Sobic004G356300 Sobic001G413100 Sobic001G413100 Sobic001G176900--Sobic001G413100 Sobic001G167500 Sobic001G167500 Sobic001G176900--Sobic001G167500 Sobic002G367800 Sobic002G367800 Sobic001G176900--Sobic002G367800 Sobic001G176900--Sobic003G388700 Sobic001G176900--Sobic004G184000 Sobic004G007700 Sobic004G007700 Sobic001G176900--Sobic004G007700 Sobic003G075200 Sobic003G075200 Sobic001G176900--Sobic003G075200 Sobic001G541000 Sobic001G541000 Sobic003G115400--Sobic001G541000 Sobic001G036300 Sobic001G036300 Sobic003G115400--Sobic001G036300 Sobic001G300000 Sobic001G300000 Sobic003G115400--Sobic001G300000 Sobic003G115400--Sobic009G097900 Sobic007G184100 Sobic007G184100 Sobic003G115400--Sobic007G184100 Sobic005G098900 Sobic005G098900 Sobic003G115400--Sobic005G098900 Sobic003G115400--Sobic003G134700 Sobic001G025900 Sobic001G025900 Sobic003G115400--Sobic001G025900 Sobic003G115400--Sobic003G274400
Octagon: transcription factors


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