Gene annotation
Transcriptome id Sobic.003G115400.1
Synonym Sb03g009730
Functional annotation RPA3 - Putative single-stranded DNA binding complex subunit 3, expressed
UniProt A0A1B6Q2M7
Pfam PF08661
Panther DB PTHR31614 PTHR31614:SF8
NCBI CDD -
KEGG Orthology K10740; replication factor A3
Gene Ontology GO:0006310; DNA recombination GO:0006281DNA repair GO:0006260DNA replication GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G18590 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os01g14980.1 : RPA3 - Putative single-stranded DNA binding complex subunit 3, expressed
MaizeGDB (Corn) Zm00025a035340 , Zm00025a023944
Brachypodium KQK03634
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G115400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G541000 MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
2 Sobic.001G036300 aminopeptidase, putative, expressed K01254: leukotriene-A4 hydrolase
3 Sobic.001G300000 - -
4 Sobic.009G097900 - -
5 Sobic.007G184100 expressed protein -
6 Sobic.005G098900 - -
7 Sobic.003G134700 exonuclease, putative, expressed -
8 Sobic.001G025900 expressed protein -
9 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
10 Sobic.003G393100 chromosome segregation protein, putative, expressed K06674: structural maintenance of chromosome 2
11 Sobic.003G177000 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
12 Sobic.009G129400 kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
13 Sobic.005G104300 - -
14 Sobic.002G152900 OsTOP6B - Topoisomerase 6 subunit B, expressed -
15 Sobic.007G173000 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
16 Sobic.004G307900 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
17 Sobic.009G093800 - -
18 Sobic.001G368100 expressed protein K18158: nuclear control of ATPase protein 2
19 Sobic.003G212600 ubiquitin-conjugating enzyme, putative, expressed K13960: UBE2T, ubiquitin-conjugating enzyme E2 T
20 Sobic.005G140100 - -


Gene co-expression network
sample Sobic003G115400 Sobic003G115400 Sobic001G541000 Sobic001G541000 Sobic003G115400--Sobic001G541000 Sobic001G036300 Sobic001G036300 Sobic003G115400--Sobic001G036300 Sobic001G300000 Sobic001G300000 Sobic003G115400--Sobic001G300000 Sobic009G097900 Sobic009G097900 Sobic003G115400--Sobic009G097900 Sobic007G184100 Sobic007G184100 Sobic003G115400--Sobic007G184100 Sobic005G098900 Sobic005G098900 Sobic003G115400--Sobic005G098900 Sobic003G134700 Sobic003G134700 Sobic003G115400--Sobic003G134700 Sobic001G025900 Sobic001G025900 Sobic003G115400--Sobic001G025900 Sobic003G274400 Sobic003G274400 Sobic003G115400--Sobic003G274400 Sobic001G541000--Sobic001G036300 Sobic003G177000 Sobic003G177000 Sobic001G541000--Sobic003G177000 Sobic001G541000--Sobic001G300000 Sobic009G101000 Sobic009G101000 Sobic001G541000--Sobic009G101000 Sobic001G541000--Sobic007G184100 Sobic006G280100 Sobic006G280100 Sobic001G541000--Sobic006G280100 Sobic003G431600 Sobic003G431600 Sobic001G541000--Sobic003G431600 Sobic003G135500 Sobic003G135500 Sobic001G541000--Sobic003G135500 Sobic010G153300 Sobic010G153300 Sobic001G541000--Sobic010G153300 Sobic001G036300--Sobic001G541000 Sobic009G256700 Sobic009G256700 Sobic001G036300--Sobic009G256700 Sobic001G036300--Sobic001G300000 Sobic001G036300--Sobic003G177000 Sobic001G144600 Sobic001G144600 Sobic001G036300--Sobic001G144600 Sobic002G152900 Sobic002G152900 Sobic001G036300--Sobic002G152900 Sobic002G425200 Sobic002G425200 Sobic001G036300--Sobic002G425200 Sobic001G036300--Sobic003G115400 Sobic010G161525 Sobic010G161525 Sobic001G036300--Sobic010G161525 Sobic001G300000--Sobic003G177000 Sobic001G300000--Sobic001G541000 Sobic007G209600 Sobic007G209600 Sobic001G300000--Sobic007G209600 Sobic007G159200 Sobic007G159200 Sobic001G300000--Sobic007G159200 Sobic001G300000--Sobic007G184100 Sobic008G080500 Sobic008G080500 Sobic001G300000--Sobic008G080500 Sobic001G300000--Sobic006G280100 Sobic001G300000--Sobic003G135500 Sobic001G211500 Sobic001G211500 Sobic001G300000--Sobic001G211500 Sobic009G093800 Sobic009G093800 Sobic009G097900--Sobic009G093800 Sobic009G097900--Sobic003G134700 Sobic003G112001 Sobic003G112001 Sobic009G097900--Sobic003G112001 Sobic009G074250 Sobic009G074250 Sobic009G097900--Sobic009G074250 Sobic001G318100 Sobic001G318100 Sobic009G097900--Sobic001G318100 Sobic001G178800 Sobic001G178800 Sobic009G097900--Sobic001G178800 Sobic001G192250 Sobic001G192250 Sobic009G097900--Sobic001G192250 Sobic005G108225 Sobic005G108225 Sobic009G097900--Sobic005G108225 Sobic009G097900--Sobic003G115400 Sobic007G184100--Sobic001G025900 Sobic003G393100 Sobic003G393100 Sobic007G184100--Sobic003G393100 Sobic004G307900 Sobic004G307900 Sobic007G184100--Sobic004G307900 Sobic007G184100--Sobic001G300000 Sobic001G377700 Sobic001G377700 Sobic007G184100--Sobic001G377700 Sobic001G013400 Sobic001G013400 Sobic007G184100--Sobic001G013400 Sobic005G104300 Sobic005G104300 Sobic007G184100--Sobic005G104300 Sobic007G007800 Sobic007G007800 Sobic007G184100--Sobic007G007800 Sobic002G317700 Sobic002G317700 Sobic007G184100--Sobic002G317700 Sobic010G165900 Sobic010G165900 Sobic005G098900--Sobic010G165900 Sobic005G098900--Sobic005G108225 Sobic008G090100 Sobic008G090100 Sobic005G098900--Sobic008G090100 Sobic003G401800 Sobic003G401800 Sobic005G098900--Sobic003G401800 Sobic010G165700 Sobic010G165700 Sobic005G098900--Sobic010G165700 Sobic010G156200 Sobic010G156200 Sobic005G098900--Sobic010G156200 Sobic005G098900--Sobic001G025900 Sobic010G248500 Sobic010G248500 Sobic005G098900--Sobic010G248500 Sobic004G328300 Sobic004G328300 Sobic005G098900--Sobic004G328300 Sobic003G134700--Sobic003G112001 Sobic003G134700--Sobic009G097900 Sobic003G134700--Sobic009G093800 Sobic003G134700--Sobic009G074250 Sobic010G102366 Sobic010G102366 Sobic003G134700--Sobic010G102366 Sobic008G178450 Sobic008G178450 Sobic003G134700--Sobic008G178450 Sobic003G134700--Sobic001G178800 Sobic003G134700--Sobic003G115400 Sobic003G128550 Sobic003G128550 Sobic003G134700--Sobic003G128550 Sobic001G025900--Sobic001G013400 Sobic002G113400 Sobic002G113400 Sobic001G025900--Sobic002G113400 Sobic002G290000 Sobic002G290000 Sobic001G025900--Sobic002G290000 Sobic002G271400 Sobic002G271400 Sobic001G025900--Sobic002G271400 Sobic005G110535 Sobic005G110535 Sobic001G025900--Sobic005G110535 Sobic004G321400 Sobic004G321400 Sobic001G025900--Sobic004G321400 Sobic004G053900 Sobic004G053900 Sobic001G025900--Sobic004G053900 Sobic001G025900--Sobic004G328300 Sobic006G236800 Sobic006G236800 Sobic001G025900--Sobic006G236800 Sobic002G219900 Sobic002G219900 Sobic003G274400--Sobic002G219900 Sobic006G245700 Sobic006G245700 Sobic003G274400--Sobic006G245700 Sobic001G436300 Sobic001G436300 Sobic003G274400--Sobic001G436300 Sobic007G125700 Sobic007G125700 Sobic003G274400--Sobic007G125700 Sobic009G031500 Sobic009G031500 Sobic003G274400--Sobic009G031500 Sobic004G129600 Sobic004G129600 Sobic003G274400--Sobic004G129600 Sobic002G430900 Sobic002G430900 Sobic003G274400--Sobic002G430900 Sobic002G017900 Sobic002G017900 Sobic003G274400--Sobic002G017900 Sobic003G274400--Sobic006G280100
Octagon: transcription factors


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