Gene annotation
Transcriptome id Sobic.005G132800.1
Synonym
Functional annotation GRF zinc finger family protein, expressed
UniProt A0A1Z5RIE6
Pfam -
Panther DB PTHR33248 PTHR33248:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g41640.1 : GRF zinc finger family protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G232201 - -
2 Sobic.008G144500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS12-09 - C2H2 zinc finger protein, expressed -
3 Sobic.010G182966 - K15639: CYP734A1, PHYB activation tagged suppressor 1
4 Sobic.002G012800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
5 Sobic.003G348700 hydrolase, alpha/beta fold family domain containing protein, expressed -
6 Sobic.005G215766 - -
7 Sobic.009G038501 - -
8 Sobic.006G146100 Os4bglu18 - monolignol beta-glucoside homologue, expressed K05350: beta-glucosidase
9 Sobic.006G208100 maintain optimal Na+/K+ (PubmedID : 24325391)@Up-reguralion under drought(PubMedID : 24916767)@OsHKT1@4 - Na+ transporter, expressed -
10 Sobic.005G212700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.009G097300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.23 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
12 Sobic.003G363200 ZOS1-17 - C2H2 zinc finger protein, expressed -
13 Sobic.003G000600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY1, expressed -
14 Sobic.010G201200 expressed protein -
15 Sobic.009G142200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@No apical meristem protein, putative, expressed -
16 Sobic.009G057400 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
17 Sobic.002G355200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BTBN16 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -
18 Sobic.001G027800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@OsMan05 - Endo-Beta-Mannanase, expressed K19355: mannan endo-1,4-beta-mannosidase
19 Sobic.009G236300 lectin-like receptor kinase, putative, expressed -
20 Sobic.003G146000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic005G132800 Sobic005G132800 Sobic004G232201 Sobic004G232201 Sobic005G132800--Sobic004G232201 Sobic008G144500 Sobic008G144500 Sobic005G132800--Sobic008G144500 Sobic010G182966 Sobic010G182966 Sobic005G132800--Sobic010G182966 Sobic002G012800 Sobic002G012800 Sobic005G132800--Sobic002G012800 Sobic003G348700 Sobic003G348700 Sobic005G132800--Sobic003G348700 Sobic005G215766 Sobic005G215766 Sobic005G132800--Sobic005G215766 Sobic009G038501 Sobic009G038501 Sobic005G132800--Sobic009G038501 Sobic006G146100 Sobic006G146100 Sobic005G132800--Sobic006G146100 Sobic006G208100 Sobic006G208100 Sobic005G132800--Sobic006G208100 Sobic004G232201--Sobic006G208100 Sobic009G076500 Sobic009G076500 Sobic004G232201--Sobic009G076500 Sobic004G232201--Sobic002G012800 Sobic004G232201--Sobic003G348700 Sobic004G232201--Sobic005G132800 Sobic009G057400 Sobic009G057400 Sobic004G232201--Sobic009G057400 Sobic002G188700 Sobic002G188700 Sobic004G232201--Sobic002G188700 Sobic003G363200 Sobic003G363200 Sobic004G232201--Sobic003G363200 Sobic008G058900 Sobic008G058900 Sobic004G232201--Sobic008G058900 Sobic008G144500--Sobic010G182966 Sobic008G144500--Sobic009G038501 Sobic002G355200 Sobic002G355200 Sobic008G144500--Sobic002G355200 Sobic009G236300 Sobic009G236300 Sobic008G144500--Sobic009G236300 Sobic003G000600 Sobic003G000600 Sobic008G144500--Sobic003G000600 Sobic009G142200 Sobic009G142200 Sobic008G144500--Sobic009G142200 Sobic006G086100 Sobic006G086100 Sobic008G144500--Sobic006G086100 Sobic008G144500--Sobic003G348700 Sobic008G144500--Sobic005G215766 Sobic010G182966--Sobic008G144500 Sobic010G182966--Sobic003G348700 Sobic010G182966--Sobic009G142200 Sobic003G189200 Sobic003G189200 Sobic010G182966--Sobic003G189200 Sobic010G182966--Sobic002G012800 Sobic010G182966--Sobic003G000600 Sobic003G232900 Sobic003G232900 Sobic010G182966--Sobic003G232900 Sobic010G182966--Sobic009G038501 Sobic010G182966--Sobic002G355200 Sobic002G012800--Sobic003G348700 Sobic002G012800--Sobic006G208100 Sobic010G201200 Sobic010G201200 Sobic002G012800--Sobic010G201200 Sobic001G027800 Sobic001G027800 Sobic002G012800--Sobic001G027800 Sobic001G210200 Sobic001G210200 Sobic002G012800--Sobic001G210200 Sobic003G348700--Sobic002G012800 Sobic003G146000 Sobic003G146000 Sobic003G348700--Sobic003G146000 Sobic003G348700--Sobic006G208100 Sobic003G348700--Sobic009G142200 Sobic003G348700--Sobic008G058900 Sobic002G135800 Sobic002G135800 Sobic003G348700--Sobic002G135800 Sobic003G348700--Sobic003G363200 Sobic003G348700--Sobic002G188700 Sobic003G348700--Sobic010G182966 Sobic003G397400 Sobic003G397400 Sobic005G215766--Sobic003G397400 Sobic009G097300 Sobic009G097300 Sobic005G215766--Sobic009G097300 Sobic006G272700 Sobic006G272700 Sobic005G215766--Sobic006G272700 Sobic005G215766--Sobic001G027800 Sobic010G253500 Sobic010G253500 Sobic005G215766--Sobic010G253500 Sobic003G137900 Sobic003G137900 Sobic005G215766--Sobic003G137900 Sobic001G235500 Sobic001G235500 Sobic005G215766--Sobic001G235500 Sobic001G210250 Sobic001G210250 Sobic005G215766--Sobic001G210250 Sobic005G215766--Sobic001G210200 Sobic009G038501--Sobic008G144500 Sobic004G236600 Sobic004G236600 Sobic009G038501--Sobic004G236600 Sobic004G236000 Sobic004G236000 Sobic009G038501--Sobic004G236000 Sobic003G360900 Sobic003G360900 Sobic009G038501--Sobic003G360900 Sobic001G251900 Sobic001G251900 Sobic009G038501--Sobic001G251900 Sobic005G152100 Sobic005G152100 Sobic009G038501--Sobic005G152100 Sobic001G212000 Sobic001G212000 Sobic009G038501--Sobic001G212000 Sobic007G178100 Sobic007G178100 Sobic009G038501--Sobic007G178100 Sobic009G236200 Sobic009G236200 Sobic009G038501--Sobic009G236200 Sobic006G146100--Sobic001G235500 Sobic001G092000 Sobic001G092000 Sobic006G146100--Sobic001G092000 Sobic006G146100--Sobic009G038501 Sobic001G217400 Sobic001G217400 Sobic006G146100--Sobic001G217400 Sobic006G146100--Sobic005G215766 Sobic003G059300 Sobic003G059300 Sobic006G146100--Sobic003G059300 Sobic006G146100--Sobic008G144500 Sobic009G197700 Sobic009G197700 Sobic006G146100--Sobic009G197700 Sobic006G146100--Sobic003G360900 Sobic006G208100--Sobic002G012800 Sobic006G208100--Sobic010G201200 Sobic006G208100--Sobic010G253500 Sobic006G208100--Sobic001G210200
Octagon: transcription factors


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