Gene annotation
Transcriptome id Sobic.005G229166.1
Synonym -
Functional annotation -
UniProt A0A1Z5RK36
Pfam PF01694
Panther DB PTHR22936 PTHR22936:SF38
NCBI CDD KOG2289; Rhomboid family proteins
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0004252serine-type endopeptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT2G29050 : RHOMBOID-like 1
RAP-DB (Rice) LOC_Os11g47840.1 : OsRhmbd18 - Putative Rhomboid homologue, expressed
MaizeGDB (Corn) Zm00025a047723 , Zm00025a014398 , Zm00025a033644 , Zm00025a029084
Brachypodium KQJ91129 , KQJ99262 , KQJ87057
Barley HORVU5Hr1G080690.2 , HORVU4Hr1G086150.8 , HORVU4Hr1G086150.9 , HORVU4Hr1G086150.3 , HORVU7Hr1G056630.1 , HORVU4Hr1G086150.7 , HORVU7Hr1G056630.3 , HORVU4Hr1G086150.5 , HORVU4Hr1G086150.4 , HORVU7Hr1G056630.2 , HORVU4Hr1G086150.6
Wheat TraesCS4D02G350300 , TraesCS4B02G356600 , TraesCS5A02G526000 , TraesCS5D02G320400 , TraesCS5B02G314900 , TraesCS5B02G314900 , TraesCS5A02G314000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G057200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
2 Sobic.010G274500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@catalase isozyme B, putative, expressed K03781: katE, CAT, catB, catalase
3 Sobic.005G091600 aquaporin protein, putative, expressed K09875: aquaporin SIP
4 Sobic.008G156300 kinase, pfkB family, putative, expressed K00868: pdxK, pyridoxine kinase
5 Sobic.002G092300 WD domain, G-beta repeat domain containing protein, expressed -
6 Sobic.004G057800 URED, putative, expressed K03190: ureD, urease accessory protein
7 Sobic.010G080200 emp24/gp25L/p24 family protein, putative, expressed -
8 Sobic.010G067700 expressed protein -
9 Sobic.008G147700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein K14169: CTU2, cytoplasmic tRNA 2-thiolation protein 2
10 Sobic.003G004700 SOUL heme-binding protein, putative, expressed -
11 Sobic.003G078800 PB1 domain containing protein, expressed -
12 Sobic.010G084000 OsPOP13 - Putative Prolyl Oligopeptidase homologue, expressed -
13 Sobic.001G540100 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
14 Sobic.001G120300 phytanoyl-CoA dioxygenase, putative, expressed K00477: phytanoyl-CoA hydroxylase
15 Sobic.002G114800 CDPK - calcium-dependent protein kinase 18(PubMedID : 31721651)@CAMK_CAMK_like.32 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
16 Sobic.001G090000 expressed protein -
17 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
18 Sobic.006G242300 - -
19 Sobic.003G083900 metallo-beta-lactamase family protein, putative, expressed -
20 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W


Gene co-expression network
sample Sobic005G229166 Sobic005G229166 Sobic001G057200 Sobic001G057200 Sobic005G229166--Sobic001G057200 Sobic010G274500 Sobic010G274500 Sobic005G229166--Sobic010G274500 Sobic005G091600 Sobic005G091600 Sobic005G229166--Sobic005G091600 Sobic008G156300 Sobic008G156300 Sobic005G229166--Sobic008G156300 Sobic002G092300 Sobic002G092300 Sobic005G229166--Sobic002G092300 Sobic004G057800 Sobic004G057800 Sobic005G229166--Sobic004G057800 Sobic010G080200 Sobic010G080200 Sobic005G229166--Sobic010G080200 Sobic010G067700 Sobic010G067700 Sobic005G229166--Sobic010G067700 Sobic008G147700 Sobic008G147700 Sobic005G229166--Sobic008G147700 Sobic010G146600 Sobic010G146600 Sobic001G057200--Sobic010G146600 Sobic002G317300 Sobic002G317300 Sobic001G057200--Sobic002G317300 Sobic001G057200--Sobic002G092300 Sobic010G249300 Sobic010G249300 Sobic001G057200--Sobic010G249300 Sobic003G372000 Sobic003G372000 Sobic001G057200--Sobic003G372000 Sobic006G047100 Sobic006G047100 Sobic001G057200--Sobic006G047100 Sobic005G044800 Sobic005G044800 Sobic001G057200--Sobic005G044800 Sobic002G143000 Sobic002G143000 Sobic001G057200--Sobic002G143000 Sobic006G264500 Sobic006G264500 Sobic001G057200--Sobic006G264500 Sobic010G188400 Sobic010G188400 Sobic010G274500--Sobic010G188400 Sobic002G376300 Sobic002G376300 Sobic010G274500--Sobic002G376300 Sobic009G177400 Sobic009G177400 Sobic010G274500--Sobic009G177400 Sobic010G274500--Sobic008G156300 Sobic002G392700 Sobic002G392700 Sobic010G274500--Sobic002G392700 Sobic010G274500--Sobic005G229166 Sobic001G120300 Sobic001G120300 Sobic010G274500--Sobic001G120300 Sobic002G189400 Sobic002G189400 Sobic010G274500--Sobic002G189400 Sobic003G145900 Sobic003G145900 Sobic010G274500--Sobic003G145900 Sobic001G123000 Sobic001G123000 Sobic005G091600--Sobic001G123000 Sobic008G128600 Sobic008G128600 Sobic005G091600--Sobic008G128600 Sobic009G054700 Sobic009G054700 Sobic005G091600--Sobic009G054700 Sobic010G168600 Sobic010G168600 Sobic005G091600--Sobic010G168600 Sobic001G078500 Sobic001G078500 Sobic005G091600--Sobic001G078500 Sobic008G090600 Sobic008G090600 Sobic005G091600--Sobic008G090600 Sobic005G091600--Sobic008G147700 Sobic003G344900 Sobic003G344900 Sobic005G091600--Sobic003G344900 Sobic009G028800 Sobic009G028800 Sobic005G091600--Sobic009G028800 Sobic007G120800 Sobic007G120800 Sobic008G156300--Sobic007G120800 Sobic006G203100 Sobic006G203100 Sobic008G156300--Sobic006G203100 Sobic001G432300 Sobic001G432300 Sobic008G156300--Sobic001G432300 Sobic008G156300--Sobic010G274500 Sobic008G156300--Sobic005G229166 Sobic010G050200 Sobic010G050200 Sobic008G156300--Sobic010G050200 Sobic002G114800 Sobic002G114800 Sobic008G156300--Sobic002G114800 Sobic002G306700 Sobic002G306700 Sobic008G156300--Sobic002G306700 Sobic001G540100 Sobic001G540100 Sobic008G156300--Sobic001G540100 Sobic010G279700 Sobic010G279700 Sobic002G092300--Sobic010G279700 Sobic004G250300 Sobic004G250300 Sobic002G092300--Sobic004G250300 Sobic004G021200 Sobic004G021200 Sobic002G092300--Sobic004G021200 Sobic007G115200 Sobic007G115200 Sobic002G092300--Sobic007G115200 Sobic008G092300 Sobic008G092300 Sobic002G092300--Sobic008G092300 Sobic001G281600 Sobic001G281600 Sobic002G092300--Sobic001G281600 Sobic001G000200 Sobic001G000200 Sobic002G092300--Sobic001G000200 Sobic003G250500 Sobic003G250500 Sobic002G092300--Sobic003G250500 Sobic001G016000 Sobic001G016000 Sobic002G092300--Sobic001G016000 Sobic001G390500 Sobic001G390500 Sobic004G057800--Sobic001G390500 Sobic009G033900 Sobic009G033900 Sobic004G057800--Sobic009G033900 Sobic001G136900 Sobic001G136900 Sobic004G057800--Sobic001G136900 Sobic001G309100 Sobic001G309100 Sobic004G057800--Sobic001G309100 Sobic001G038100 Sobic001G038100 Sobic004G057800--Sobic001G038100 Sobic003G311000 Sobic003G311000 Sobic004G057800--Sobic003G311000 Sobic007G205000 Sobic007G205000 Sobic004G057800--Sobic007G205000 Sobic001G370300 Sobic001G370300 Sobic004G057800--Sobic001G370300 Sobic006G183000 Sobic006G183000 Sobic004G057800--Sobic006G183000 Sobic001G051200 Sobic001G051200 Sobic010G080200--Sobic001G051200 Sobic009G238800 Sobic009G238800 Sobic010G080200--Sobic009G238800 Sobic002G281300 Sobic002G281300 Sobic010G080200--Sobic002G281300 Sobic006G217700 Sobic006G217700 Sobic010G080200--Sobic006G217700 Sobic005G155700 Sobic005G155700 Sobic010G080200--Sobic005G155700 Sobic001G033500 Sobic001G033500 Sobic010G080200--Sobic001G033500 Sobic001G057800 Sobic001G057800 Sobic010G080200--Sobic001G057800 Sobic002G202400 Sobic002G202400 Sobic010G080200--Sobic002G202400 Sobic010G205300 Sobic010G205300 Sobic010G080200--Sobic010G205300 Sobic010G067700--Sobic008G128600 Sobic010G067700--Sobic009G054700 Sobic010G067700--Sobic001G136900 Sobic010G071200 Sobic010G071200 Sobic010G067700--Sobic010G071200 Sobic002G256300 Sobic002G256300 Sobic010G067700--Sobic002G256300 Sobic001G512900 Sobic001G512900 Sobic010G067700--Sobic001G512900 Sobic010G067700--Sobic010G168600 Sobic001G083600 Sobic001G083600 Sobic010G067700--Sobic001G083600 Sobic003G146900 Sobic003G146900 Sobic010G067700--Sobic003G146900 Sobic003G354400 Sobic003G354400 Sobic008G147700--Sobic003G354400 Sobic003G436300 Sobic003G436300 Sobic008G147700--Sobic003G436300 Sobic008G147700--Sobic010G188400 Sobic008G147700--Sobic001G120300 Sobic005G203800 Sobic005G203800 Sobic008G147700--Sobic005G203800 Sobic006G083600 Sobic006G083600 Sobic008G147700--Sobic006G083600 Sobic008G147700--Sobic005G091600 Sobic010G130200 Sobic010G130200 Sobic008G147700--Sobic010G130200 Sobic006G176600 Sobic006G176600 Sobic008G147700--Sobic006G176600
Octagon: transcription factors


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