Gene annotation
Transcriptome id Sobic.001G540100.1,Sobic.001G540100.3,Sobic.001G540100.2
Synonym Sb01g050250, ATBCAT-5
Functional annotation aminotransferase domain containing protein, putative, expressed
UniProt A0A1B6QR59 , A0A1B6QR82 , A0A1Z5SC15
Pfam PF01063
Panther DB PTHR11825 PTHR11825:SF46
NCBI CDD KOG0975; Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily
KEGG Orthology K00826; E2.6.1.42, branched-chain amino acid aminotransferase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT5G65780 : branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)
RAP-DB (Rice) LOC_Os03g01600.1 : aminotransferase domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a003272 , Zm00025a053579
Brachypodium KQK24098 , KQK24099 , KQJ97722 , KQK24100 , KQK24101
Barley HORVU4Hr1G087100.18 , HORVU4Hr1G087100.10 , HORVU4Hr1G087100.11 , HORVU4Hr1G087100.12 , HORVU4Hr1G087100.13 , HORVU4Hr1G087100.14 , HORVU4Hr1G087100.15 , HORVU4Hr1G087100.16 , HORVU4Hr1G087100.17 , HORVU4Hr1G087100.8 , HORVU4Hr1G087100.9 , HORVU1Hr1G002790.1 , HORVU4Hr1G087100.2 , HORVU4Hr1G087100.3 , HORVU4Hr1G087100.1 , HORVU4Hr1G087100.6 , HORVU4Hr1G087100.7 , HORVU4Hr1G087100.4 , HORVU4Hr1G087100.5
Wheat TraesCS5A02G531200 , TraesCS5A02G531200 , TraesCS5A02G531200 , TraesCS4B02G363000 , TraesCS1D02G211700 , TraesCS4D02G356200
Populus PNT26319 , PNT26323 , PNT26322 , PNT26321 , PNT26320


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G114800 CDPK - calcium-dependent protein kinase 18(PubMedID : 31721651)@CAMK_CAMK_like.32 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
2 Sobic.004G173600 OsPDIL5-3 protein disulfide isomerase PDIL5-3, expressed K09580: PDIA1, protein disulfide-isomerase A1
3 Sobic.007G092600 ankyrin repeat-rich protein, putative, expressed K19044: E3 ubiquitin-protein ligase XBAT32/33
4 Sobic.001G057200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
5 Sobic.009G177400 leucine-rich repeat family protein, putative, expressed -
6 Sobic.010G274500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@catalase isozyme B, putative, expressed K03781: katE, CAT, catB, catalase
7 Sobic.008G156300 kinase, pfkB family, putative, expressed K00868: pdxK, pyridoxine kinase
8 Sobic.002G187300 calmodulin-binding protein, putative, expressed -
9 Sobic.010G084000 OsPOP13 - Putative Prolyl Oligopeptidase homologue, expressed -
10 Sobic.001G201500 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
11 Sobic.001G432300 imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed K01663: imidazole glycerol-phosphate synthase
12 Sobic.002G392700 FGGY family of carbohydrate kinases, putative, expressed K00854: xylB, xylulokinase
13 Sobic.006G177300 ATFUC1, putative, expressed K01206: alpha-L-fucosidase
14 Sobic.008G088830 - -
15 Sobic.001G328000 phenazine biosynthesis protein, putative, expressed -
16 Sobic.006G176600 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
17 Sobic.006G281500 prenylcysteine oxidase 1 precursor, putative, expressed K05906: PCYOX1, prenylcysteine oxidase / farnesylcysteine lyase
18 Sobic.010G002400 glutamine cyclotransferase precursor, putative, expressed -
19 Sobic.010G188400 copine-1, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
20 Sobic.004G163300 protein kinase domain containing protein, expressed K14510: serine/threonine-protein kinase CTR1


Gene co-expression network
sample Sobic001G540100 Sobic001G540100 Sobic002G114800 Sobic002G114800 Sobic001G540100--Sobic002G114800 Sobic004G173600 Sobic004G173600 Sobic001G540100--Sobic004G173600 Sobic007G092600 Sobic007G092600 Sobic001G540100--Sobic007G092600 Sobic001G057200 Sobic001G057200 Sobic001G540100--Sobic001G057200 Sobic009G177400 Sobic009G177400 Sobic001G540100--Sobic009G177400 Sobic010G274500 Sobic010G274500 Sobic001G540100--Sobic010G274500 Sobic008G156300 Sobic008G156300 Sobic001G540100--Sobic008G156300 Sobic002G187300 Sobic002G187300 Sobic001G540100--Sobic002G187300 Sobic010G084000 Sobic010G084000 Sobic001G540100--Sobic010G084000 Sobic001G049200 Sobic001G049200 Sobic002G114800--Sobic001G049200 Sobic002G114800--Sobic009G177400 Sobic001G328000 Sobic001G328000 Sobic002G114800--Sobic001G328000 Sobic004G163300 Sobic004G163300 Sobic002G114800--Sobic004G163300 Sobic002G114800--Sobic004G173600 Sobic009G102300 Sobic009G102300 Sobic002G114800--Sobic009G102300 Sobic002G306700 Sobic002G306700 Sobic002G114800--Sobic002G306700 Sobic005G134600 Sobic005G134600 Sobic002G114800--Sobic005G134600 Sobic002G114800--Sobic001G540100 Sobic004G173600--Sobic002G114800 Sobic010G193900 Sobic010G193900 Sobic004G173600--Sobic010G193900 Sobic004G173600--Sobic001G049200 Sobic010G002400 Sobic010G002400 Sobic004G173600--Sobic010G002400 Sobic004G173600--Sobic002G187300 Sobic003G280300 Sobic003G280300 Sobic004G173600--Sobic003G280300 Sobic006G176600 Sobic006G176600 Sobic004G173600--Sobic006G176600 Sobic004G173600--Sobic001G540100 Sobic004G132300 Sobic004G132300 Sobic004G173600--Sobic004G132300 Sobic007G092600--Sobic001G540100 Sobic004G127700 Sobic004G127700 Sobic007G092600--Sobic004G127700 Sobic002G009300 Sobic002G009300 Sobic007G092600--Sobic002G009300 Sobic002G308500 Sobic002G308500 Sobic007G092600--Sobic002G308500 Sobic007G092600--Sobic001G328000 Sobic002G408800 Sobic002G408800 Sobic007G092600--Sobic002G408800 Sobic010G106900 Sobic010G106900 Sobic007G092600--Sobic010G106900 Sobic003G029600 Sobic003G029600 Sobic007G092600--Sobic003G029600 Sobic007G092600--Sobic010G002400 Sobic010G146600 Sobic010G146600 Sobic001G057200--Sobic010G146600 Sobic002G317300 Sobic002G317300 Sobic001G057200--Sobic002G317300 Sobic002G092300 Sobic002G092300 Sobic001G057200--Sobic002G092300 Sobic010G249300 Sobic010G249300 Sobic001G057200--Sobic010G249300 Sobic003G372000 Sobic003G372000 Sobic001G057200--Sobic003G372000 Sobic006G047100 Sobic006G047100 Sobic001G057200--Sobic006G047100 Sobic005G044800 Sobic005G044800 Sobic001G057200--Sobic005G044800 Sobic002G143000 Sobic002G143000 Sobic001G057200--Sobic002G143000 Sobic006G264500 Sobic006G264500 Sobic001G057200--Sobic006G264500 Sobic009G177400--Sobic002G114800 Sobic008G144401 Sobic008G144401 Sobic009G177400--Sobic008G144401 Sobic002G258100 Sobic002G258100 Sobic009G177400--Sobic002G258100 Sobic008G107500 Sobic008G107500 Sobic009G177400--Sobic008G107500 Sobic003G354400 Sobic003G354400 Sobic009G177400--Sobic003G354400 Sobic009G177400--Sobic010G274500 Sobic002G175500 Sobic002G175500 Sobic009G177400--Sobic002G175500 Sobic009G177400--Sobic004G163300 Sobic007G098400 Sobic007G098400 Sobic009G177400--Sobic007G098400 Sobic010G188400 Sobic010G188400 Sobic010G274500--Sobic010G188400 Sobic002G376300 Sobic002G376300 Sobic010G274500--Sobic002G376300 Sobic010G274500--Sobic009G177400 Sobic010G274500--Sobic008G156300 Sobic002G392700 Sobic002G392700 Sobic010G274500--Sobic002G392700 Sobic005G229166 Sobic005G229166 Sobic010G274500--Sobic005G229166 Sobic001G120300 Sobic001G120300 Sobic010G274500--Sobic001G120300 Sobic002G189400 Sobic002G189400 Sobic010G274500--Sobic002G189400 Sobic003G145900 Sobic003G145900 Sobic010G274500--Sobic003G145900 Sobic007G120800 Sobic007G120800 Sobic008G156300--Sobic007G120800 Sobic006G203100 Sobic006G203100 Sobic008G156300--Sobic006G203100 Sobic001G432300 Sobic001G432300 Sobic008G156300--Sobic001G432300 Sobic008G156300--Sobic010G274500 Sobic008G156300--Sobic005G229166 Sobic010G050200 Sobic010G050200 Sobic008G156300--Sobic010G050200 Sobic008G156300--Sobic002G114800 Sobic008G156300--Sobic002G306700 Sobic008G156300--Sobic001G540100 Sobic003G047100 Sobic003G047100 Sobic002G187300--Sobic003G047100 Sobic006G002700 Sobic006G002700 Sobic002G187300--Sobic006G002700 Sobic009G088100 Sobic009G088100 Sobic002G187300--Sobic009G088100 Sobic004G348900 Sobic004G348900 Sobic002G187300--Sobic004G348900 Sobic001G109300 Sobic001G109300 Sobic002G187300--Sobic001G109300 Sobic006G252200 Sobic006G252200 Sobic002G187300--Sobic006G252200 Sobic010G080200 Sobic010G080200 Sobic002G187300--Sobic010G080200 Sobic004G130900 Sobic004G130900 Sobic002G187300--Sobic004G130900 Sobic002G187300--Sobic004G173600 Sobic010G084000--Sobic001G120300 Sobic010G256800 Sobic010G256800 Sobic010G084000--Sobic010G256800 Sobic003G370200 Sobic003G370200 Sobic010G084000--Sobic003G370200 Sobic010G021000 Sobic010G021000 Sobic010G084000--Sobic010G021000 Sobic010G019800 Sobic010G019800 Sobic010G084000--Sobic010G019800 Sobic002G301500 Sobic002G301500 Sobic010G084000--Sobic002G301500 Sobic008G133400 Sobic008G133400 Sobic010G084000--Sobic008G133400 Sobic010G084000--Sobic010G106900 Sobic010G084000--Sobic001G057200
Octagon: transcription factors


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