Gene annotation
Transcriptome id Sobic.006G016200.1
Synonym Sb06g001560
Functional annotation expressed protein
UniProt C5YC75
Pfam -
Panther DB PTHR36070
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G22875 : -
RAP-DB (Rice) LOC_Os04g08330.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G016200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G218000 expressed protein K13528: mediator of RNA polymerase II transcription subunit 20
2 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
3 Sobic.002G373800 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
4 Sobic.009G016201 - K09481: SEC61B, protein transport protein SEC61 subunit beta
5 Sobic.005G011400 expressed protein -
6 Sobic.010G243200 ZOS6-08 - C2H2 zinc finger protein, expressed K14816: pre-60S factor REI1
7 Sobic.001G398600 anaphase-promoting complex subunit 11, putative, expressed K03358: anaphase-promoting complex subunit 11
8 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
9 Sobic.010G150575 - -
10 Sobic.002G263800 peptidase, T1 family, putative, expressed K02736: 20S proteasome subunit beta 7
11 Sobic.010G039800 expressed protein -
12 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
13 Sobic.004G265700 anaphase-promoting complex subunit 11, putative, expressed K03868: RBX1, RING-box protein 1
14 Sobic.006G141500 expressed protein -
15 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
16 Sobic.002G282400 expressed protein -
17 Sobic.004G107600 prefoldin subunit, putative, expressed K04798: pfdB, prefoldin beta subunit
18 Sobic.001G014500 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed K03016: RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3
19 Sobic.003G115800 miro, putative, expressed K07953: GTP-binding protein SAR1
20 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit


Gene co-expression network
sample Sobic006G016200 Sobic006G016200 Sobic002G218000 Sobic002G218000 Sobic006G016200--Sobic002G218000 Sobic005G111100 Sobic005G111100 Sobic006G016200--Sobic005G111100 Sobic002G373800 Sobic002G373800 Sobic006G016200--Sobic002G373800 Sobic009G016201 Sobic009G016201 Sobic006G016200--Sobic009G016201 Sobic005G011400 Sobic005G011400 Sobic006G016200--Sobic005G011400 Sobic010G243200 Sobic010G243200 Sobic006G016200--Sobic010G243200 Sobic001G398600 Sobic001G398600 Sobic006G016200--Sobic001G398600 Sobic009G036900 Sobic009G036900 Sobic006G016200--Sobic009G036900 Sobic010G150575 Sobic010G150575 Sobic006G016200--Sobic010G150575 Sobic009G180000 Sobic009G180000 Sobic002G218000--Sobic009G180000 Sobic006G141500 Sobic006G141500 Sobic002G218000--Sobic006G141500 Sobic003G249800 Sobic003G249800 Sobic002G218000--Sobic003G249800 Sobic010G204500 Sobic010G204500 Sobic002G218000--Sobic010G204500 Sobic002G218000--Sobic005G111100 Sobic001G066700 Sobic001G066700 Sobic002G218000--Sobic001G066700 Sobic010G106200 Sobic010G106200 Sobic002G218000--Sobic010G106200 Sobic002G218000--Sobic010G243200 Sobic002G330000 Sobic002G330000 Sobic002G218000--Sobic002G330000 Sobic001G128400 Sobic001G128400 Sobic005G111100--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic005G111100--Sobic003G129800 Sobic004G032000 Sobic004G032000 Sobic005G111100--Sobic004G032000 Sobic004G066800 Sobic004G066800 Sobic005G111100--Sobic004G066800 Sobic003G280700 Sobic003G280700 Sobic005G111100--Sobic003G280700 Sobic007G152400 Sobic007G152400 Sobic005G111100--Sobic007G152400 Sobic010G054200 Sobic010G054200 Sobic005G111100--Sobic010G054200 Sobic006G231700 Sobic006G231700 Sobic005G111100--Sobic006G231700 Sobic005G111100--Sobic002G218000 Sobic001G517600 Sobic001G517600 Sobic002G373800--Sobic001G517600 Sobic010G173100 Sobic010G173100 Sobic002G373800--Sobic010G173100 Sobic002G406500 Sobic002G406500 Sobic002G373800--Sobic002G406500 Sobic002G263800 Sobic002G263800 Sobic002G373800--Sobic002G263800 Sobic002G373800--Sobic003G280700 Sobic001G436200 Sobic001G436200 Sobic002G373800--Sobic001G436200 Sobic002G373800--Sobic005G111100 Sobic001G011200 Sobic001G011200 Sobic002G373800--Sobic001G011200 Sobic002G374900 Sobic002G374900 Sobic002G373800--Sobic002G374900 Sobic009G016201--Sobic002G263800 Sobic007G095400 Sobic007G095400 Sobic009G016201--Sobic007G095400 Sobic008G132800 Sobic008G132800 Sobic009G016201--Sobic008G132800 Sobic004G172700 Sobic004G172700 Sobic009G016201--Sobic004G172700 Sobic009G016201--Sobic003G249800 Sobic001G037000 Sobic001G037000 Sobic009G016201--Sobic001G037000 Sobic008G161000 Sobic008G161000 Sobic009G016201--Sobic008G161000 Sobic010G237000 Sobic010G237000 Sobic009G016201--Sobic010G237000 Sobic010G029400 Sobic010G029400 Sobic009G016201--Sobic010G029400 Sobic005G011400--Sobic006G016200 Sobic001G067601 Sobic001G067601 Sobic005G011400--Sobic001G067601 Sobic009G054000 Sobic009G054000 Sobic005G011400--Sobic009G054000 Sobic004G265700 Sobic004G265700 Sobic005G011400--Sobic004G265700 Sobic002G211900 Sobic002G211900 Sobic005G011400--Sobic002G211900 Sobic010G153100 Sobic010G153100 Sobic005G011400--Sobic010G153100 Sobic010G217900 Sobic010G217900 Sobic005G011400--Sobic010G217900 Sobic010G225300 Sobic010G225300 Sobic005G011400--Sobic010G225300 Sobic003G357300 Sobic003G357300 Sobic005G011400--Sobic003G357300 Sobic010G243200--Sobic006G141500 Sobic002G282400 Sobic002G282400 Sobic010G243200--Sobic002G282400 Sobic010G243200--Sobic002G218000 Sobic003G350300 Sobic003G350300 Sobic010G243200--Sobic003G350300 Sobic003G321700 Sobic003G321700 Sobic010G243200--Sobic003G321700 Sobic001G177800 Sobic001G177800 Sobic010G243200--Sobic001G177800 Sobic003G181500 Sobic003G181500 Sobic010G243200--Sobic003G181500 Sobic001G288800 Sobic001G288800 Sobic010G243200--Sobic001G288800 Sobic002G187500 Sobic002G187500 Sobic010G243200--Sobic002G187500 Sobic001G398600--Sobic005G111100 Sobic001G532100 Sobic001G532100 Sobic001G398600--Sobic001G532100 Sobic007G167700 Sobic007G167700 Sobic001G398600--Sobic007G167700 Sobic002G044000 Sobic002G044000 Sobic001G398600--Sobic002G044000 Sobic009G212300 Sobic009G212300 Sobic001G398600--Sobic009G212300 Sobic001G398600--Sobic006G016200 Sobic001G398600--Sobic007G152400 Sobic001G126200 Sobic001G126200 Sobic001G398600--Sobic001G126200 Sobic004G012800 Sobic004G012800 Sobic001G398600--Sobic004G012800 Sobic002G068300 Sobic002G068300 Sobic009G036900--Sobic002G068300 Sobic009G034400 Sobic009G034400 Sobic009G036900--Sobic009G034400 Sobic006G256500 Sobic006G256500 Sobic009G036900--Sobic006G256500 Sobic003G024800 Sobic003G024800 Sobic009G036900--Sobic003G024800 Sobic010G228600 Sobic010G228600 Sobic009G036900--Sobic010G228600 Sobic010G039800 Sobic010G039800 Sobic009G036900--Sobic010G039800 Sobic001G529000 Sobic001G529000 Sobic009G036900--Sobic001G529000 Sobic010G071200 Sobic010G071200 Sobic009G036900--Sobic010G071200 Sobic001G424500 Sobic001G424500 Sobic009G036900--Sobic001G424500 Sobic010G150575--Sobic001G011200 Sobic010G150575--Sobic003G321700 Sobic001G016400 Sobic001G016400 Sobic010G150575--Sobic001G016400 Sobic001G091801 Sobic001G091801 Sobic010G150575--Sobic001G091801 Sobic004G198400 Sobic004G198400 Sobic010G150575--Sobic004G198400 Sobic010G150575--Sobic002G374900 Sobic009G166500 Sobic009G166500 Sobic010G150575--Sobic009G166500 Sobic001G018800 Sobic001G018800 Sobic010G150575--Sobic001G018800 Sobic004G145801 Sobic004G145801 Sobic010G150575--Sobic004G145801
Octagon: transcription factors


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