Gene annotation
Transcriptome id Sobic.006G090800.2
Synonym Sb06g017590
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
DUF538 domain containing protein, putative, expressed
UniProt A0A1Z5RD10
Pfam PF04398
Panther DB PTHR31676 PTHR31676:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G02360 : Protein of unknown function, DUF538
RAP-DB (Rice) LOC_Os04g36600.1 : DUF538 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a011269
Brachypodium KQJ82840
Barley HORVU2Hr1G077110.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G327100 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
2 Sobic.002G204600 expressed protein -
3 Sobic.003G075000 expressed protein -
4 Sobic.009G249900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed K14506: jasmonic acid-amino synthetase
5 Sobic.004G083300 OsFBL7 - F-box domain and LRR containing protein, expressed K14515: EIN3-binding F-box protein
6 Sobic.006G212100 expressed protein -
7 Sobic.006G102400 transporter family protein, putative, expressed -
8 Sobic.002G289400 serine/threonine-protein kinase receptor precursor, putative, expressed -
9 Sobic.001G138300 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
10 Sobic.003G320600 membrane protein, putative, expressed -
11 Sobic.001G386200 Atypical Cys His rich thioredoxin 4 (Os)(PubMedID : 27208977)@thioredoxin, putative, expressed -
12 Sobic.001G024500 uncharacterized Cys-rich domain containing protein, putative, expressed -
13 Sobic.010G241300 -(PubMedID : 26465154)@OsCML29 - Calmodulin-related calcium sensor protein, expressed -
14 Sobic.002G066400 OsFBDUF18 - F-box and DUF domain containing protein, expressed -
15 Sobic.002G376700 EF hand family protein, putative -
16 Sobic.002G026100 expressed protein -
17 Sobic.001G463100 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.001G526600 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
19 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
20 Sobic.009G146800 potassium channel AKT2/3, putative, expressed -


Gene co-expression network
sample Sobic006G090800 Sobic006G090800 Sobic003G327100 Sobic003G327100 Sobic006G090800--Sobic003G327100 Sobic002G204600 Sobic002G204600 Sobic006G090800--Sobic002G204600 Sobic003G075000 Sobic003G075000 Sobic006G090800--Sobic003G075000 Sobic009G249900 Sobic009G249900 Sobic006G090800--Sobic009G249900 Sobic004G083300 Sobic004G083300 Sobic006G090800--Sobic004G083300 Sobic006G212100 Sobic006G212100 Sobic006G090800--Sobic006G212100 Sobic006G102400 Sobic006G102400 Sobic006G090800--Sobic006G102400 Sobic002G289400 Sobic002G289400 Sobic006G090800--Sobic002G289400 Sobic001G138300 Sobic001G138300 Sobic006G090800--Sobic001G138300 Sobic006G262900 Sobic006G262900 Sobic003G327100--Sobic006G262900 Sobic003G327100--Sobic001G138300 Sobic009G101400 Sobic009G101400 Sobic003G327100--Sobic009G101400 Sobic003G048500 Sobic003G048500 Sobic003G327100--Sobic003G048500 Sobic001G530500 Sobic001G530500 Sobic003G327100--Sobic001G530500 Sobic010G092300 Sobic010G092300 Sobic003G327100--Sobic010G092300 Sobic006G198500 Sobic006G198500 Sobic003G327100--Sobic006G198500 Sobic001G208300 Sobic001G208300 Sobic003G327100--Sobic001G208300 Sobic001G294200 Sobic001G294200 Sobic003G327100--Sobic001G294200 Sobic002G204600--Sobic006G102400 Sobic004G174400 Sobic004G174400 Sobic002G204600--Sobic004G174400 Sobic003G386600 Sobic003G386600 Sobic002G204600--Sobic003G386600 Sobic005G188600 Sobic005G188600 Sobic002G204600--Sobic005G188600 Sobic007G062500 Sobic007G062500 Sobic002G204600--Sobic007G062500 Sobic004G269000 Sobic004G269000 Sobic002G204600--Sobic004G269000 Sobic001G427300 Sobic001G427300 Sobic002G204600--Sobic001G427300 Sobic006G228500 Sobic006G228500 Sobic002G204600--Sobic006G228500 Sobic006G130800 Sobic006G130800 Sobic002G204600--Sobic006G130800 Sobic001G024500 Sobic001G024500 Sobic003G075000--Sobic001G024500 Sobic001G131400 Sobic001G131400 Sobic003G075000--Sobic001G131400 Sobic006G100600 Sobic006G100600 Sobic003G075000--Sobic006G100600 Sobic007G194700 Sobic007G194700 Sobic003G075000--Sobic007G194700 Sobic002G345850 Sobic002G345850 Sobic003G075000--Sobic002G345850 Sobic005G107300 Sobic005G107300 Sobic003G075000--Sobic005G107300 Sobic001G087900 Sobic001G087900 Sobic003G075000--Sobic001G087900 Sobic001G072800 Sobic001G072800 Sobic003G075000--Sobic001G072800 Sobic002G066400 Sobic002G066400 Sobic003G075000--Sobic002G066400 Sobic002G401100 Sobic002G401100 Sobic009G249900--Sobic002G401100 Sobic009G249900--Sobic002G204600 Sobic003G345400 Sobic003G345400 Sobic009G249900--Sobic003G345400 Sobic001G048100 Sobic001G048100 Sobic009G249900--Sobic001G048100 Sobic009G249900--Sobic003G048500 Sobic007G171400 Sobic007G171400 Sobic009G249900--Sobic007G171400 Sobic002G054300 Sobic002G054300 Sobic009G249900--Sobic002G054300 Sobic007G150100 Sobic007G150100 Sobic009G249900--Sobic007G150100 Sobic010G184100 Sobic010G184100 Sobic009G249900--Sobic010G184100 Sobic010G135000 Sobic010G135000 Sobic004G083300--Sobic010G135000 Sobic002G134001 Sobic002G134001 Sobic004G083300--Sobic002G134001 Sobic004G327300 Sobic004G327300 Sobic004G083300--Sobic004G327300 Sobic009G131100 Sobic009G131100 Sobic004G083300--Sobic009G131100 Sobic004G083300--Sobic006G212100 Sobic009G174900 Sobic009G174900 Sobic004G083300--Sobic009G174900 Sobic001G463100 Sobic001G463100 Sobic004G083300--Sobic001G463100 Sobic006G180200 Sobic006G180200 Sobic004G083300--Sobic006G180200 Sobic001G415500 Sobic001G415500 Sobic004G083300--Sobic001G415500 Sobic001G054200 Sobic001G054200 Sobic006G212100--Sobic001G054200 Sobic009G198500 Sobic009G198500 Sobic006G212100--Sobic009G198500 Sobic001G314500 Sobic001G314500 Sobic006G212100--Sobic001G314500 Sobic006G263900 Sobic006G263900 Sobic006G212100--Sobic006G263900 Sobic002G400000 Sobic002G400000 Sobic006G212100--Sobic002G400000 Sobic007G168600 Sobic007G168600 Sobic006G212100--Sobic007G168600 Sobic006G212100--Sobic009G174900 Sobic010G083700 Sobic010G083700 Sobic006G212100--Sobic010G083700 Sobic001G005900 Sobic001G005900 Sobic006G212100--Sobic001G005900 Sobic010G164200 Sobic010G164200 Sobic006G102400--Sobic010G164200 Sobic008G183200 Sobic008G183200 Sobic006G102400--Sobic008G183200 Sobic004G122200 Sobic004G122200 Sobic006G102400--Sobic004G122200 Sobic010G241300 Sobic010G241300 Sobic006G102400--Sobic010G241300 Sobic001G217700 Sobic001G217700 Sobic006G102400--Sobic001G217700 Sobic006G051300 Sobic006G051300 Sobic006G102400--Sobic006G051300 Sobic006G249050 Sobic006G249050 Sobic006G102400--Sobic006G249050 Sobic003G052300 Sobic003G052300 Sobic006G102400--Sobic003G052300 Sobic003G397200 Sobic003G397200 Sobic006G102400--Sobic003G397200 Sobic001G233400 Sobic001G233400 Sobic002G289400--Sobic001G233400 Sobic004G023200 Sobic004G023200 Sobic002G289400--Sobic004G023200 Sobic001G069000 Sobic001G069000 Sobic002G289400--Sobic001G069000 Sobic006G103400 Sobic006G103400 Sobic002G289400--Sobic006G103400 Sobic008G104801 Sobic008G104801 Sobic002G289400--Sobic008G104801 Sobic002G301700 Sobic002G301700 Sobic002G289400--Sobic002G301700 Sobic001G495300 Sobic001G495300 Sobic002G289400--Sobic001G495300 Sobic002G033800 Sobic002G033800 Sobic002G289400--Sobic002G033800 Sobic002G289400--Sobic010G241300 Sobic004G079100 Sobic004G079100 Sobic001G138300--Sobic004G079100 Sobic003G350600 Sobic003G350600 Sobic001G138300--Sobic003G350600 Sobic001G430800 Sobic001G430800 Sobic001G138300--Sobic001G430800 Sobic004G231400 Sobic004G231400 Sobic001G138300--Sobic004G231400 Sobic001G138300--Sobic001G054200 Sobic001G138300--Sobic006G212100 Sobic001G441600 Sobic001G441600 Sobic001G138300--Sobic001G441600 Sobic001G138300--Sobic006G263900 Sobic002G129000 Sobic002G129000 Sobic001G138300--Sobic002G129000
Octagon: transcription factors


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